si:rp71-39b20.4 (si:rp71-39b20.4,LOC107585115,LOC107722566,LOC107688468,LOC107589795,LOC103032005)


Basic Information

Item Value
gene id si:rp71-39b20.4
gene name si:rp71-39b20.4,LOC107585115,LOC107722566,LOC107688468,LOC107589795,LOC103032005
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11417942 ~ 11420734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222048.1
ATGGATCACCCAAGAAGGCAtctgaaaaaactgaaaaagagacGTTCGAGTCTTTTCGCAAGTGTCAAACTTAATGCCAGTTTTTCACAGAGTATAGAGGAAGAAGAGAGTGCCTTTCCATTTTCACAAGACAGCTCTGTGAAACCTTGGACGTCGATGGACAACCTCGATACTCCATCACCTCAGGCAAGTGACAAAAGACAtcaagaaaagaggaaaagcaGTGAGACCGAAGCAGCAAAAATGCCACACCGTCATTCAACAGTCATCAATGTTAATGTAGGTGGAAAACTCTTCACCATTCCCAAACATTTAGCTATCAGATACCCTAAAACCAGAATAGGCAGCTTAGCCCTGTGCAAAGATCCTGTCAAGCAGCTAACGCTCTGCGATGACTATTGTGTGCTCActaatgagtttttttttgacCGGGATCCTACTTTCTTCCACTACATCTTCCACTTCTACTGTAGCAATGTGTTATGGGTAATGGAGAGTCTTTGCCCCGTCAATTTTGAGGAGGAGATGAAGTTTTGGGGCCTGCATTTGAGGGACACCCCTCGCTGCTGTCGCATTCTCTACGAGGAGAAACTAGACGAGATAAGAGACCAGCTGAAAGTGAACAGAGAGCTTATGGCGGAAATCGAGCCCCAGCATAACGAGGAGGGTTTCAAAACAATGTGTTTTGGTGGCATTCGCAAGATGCTATGGGACCTGATGGAGAACCCATACTCCTCGATGTCTGCTAAGGCCTTCGCTGTGTTTTCCAGCCTCTTTGTGCTCATCTCCATTGTAGCAATGACTCTAAACACAGTGAGCGAGCTGAAATACTATAAAATCTATGGAAGAACCTACATGGAGTGTGTGGAGATCACTTCAATCCTCTTCTTCACCTTCGAGTACTTCCTTCGCTTGCTGACAACTTGCAACGTCAAGCATTTTCTGAAGAGTGCACTTAATTTTGTAGACTTAGTGGCTGTCATGCCTTACTTTATCCAGCTGGTATTTGAGGTTTTTGCTGACCAGGAAGATCTGAGCGTTCAGGATGATCTGAAAACGATGGCGAGGGTTAGCAAGGTTAGCAAAGTGCTCAAAGTCGTCAAACTCATGAGAATCTTTCGCATTTTGAAACTGGCGAGGCACTCGACGGGCATGCGGGCTTTTGGCTTCACTCTTCGCCAGTGTTTTGAACAGGTCTGCTGCCTGTTTCTGTTCATTATCATGGGGATCTTCACATTCTCTGCACTGATGCACTCAGTGGAGCAGGATGTTGCAGGAACACCGTTTAGCAGTATACCAGATGCCTGGTGGTGGGCAGCGGTGAGCATCTCTACGGTGGGGTACGGAGACGTGGTGCCCATTTCTTACTCTGGTCGGGTGGTGGCCTTCGGGTGCATATCTTTTGGTATTATTCTAAATGGAATGCCAATCTCCATCCTGTTTAACAAATTCTCTGACTATTACGCCAAGTTGAAGGCCCAGGAGTGCACTAACACCAAAGTCCAGCGGGGTTTGAACCTCAAGAAGAGACTGCAACGAAAATTAGAGAACTGCTTCGGGCCTCCAGCTGAGGACTCCGATGAGGACAATAGACATCACATTGGCCAGTGTCATCACTGAACGTCCTTGTCACCCCGACTGCCTCGCTGCC

Function

symbol description
si:rp71-39b20.4 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane.

NR:

description
potassium voltage-gated channel subfamily V member 2-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222048.1 True 1651 mRNA 0.47 2 11417942 11420734

Neighbor

gene id symbol gene type direction distance location
insl3 LOC107586604,LOC107722567,LOC107688537,LOC107680263,LOC107589901,LOC107709882 coding downstream 3097 11414306 ~ 11414845 (-)
zgc:154006 LOC107722587,LOC107688535,LOC107585150,LOC107680250,LOC107718071,LOC107688536,LOC107722589 coding downstream 40063 11367570 ~ 11377879 (-)
plvapa LOC107688534,LOC107722517,LOC107586083 coding downstream 61542 11353433 ~ 11356400 (-)
ano8a LOC107718073,LOC107688459,LOC107589801,LOC107586092,LOC107722556,LOC107680225 coding downstream 67278 11341388 ~ 11350664 (-)
myh7 vmhc,LOC107688458,LOC107722552,LOC107589804,LOC107680223 coding downstream 105224 11301092 ~ 11312718 (-)
crtc1a NA coding upstream 37717 11458451 ~ 11467496 (-)
LOC122361755 NA coding upstream 54887 11475621 ~ 11476171 (-)
nck1a nck1a,LOC107688485,LOC107585026,LOC107722651,LOC107709892,LOC107550612,LOC107680266 coding upstream 195089 11615823 ~ 11624104 (-)
slc35g2a slc35g2a,LOC107709891,LOC107550608,LOC107680231,LOC107586575,LOC107688541,LOC107722521 coding upstream 207411 11628145 ~ 11631800 (-)
pccb pccb,LOC107688488,LOC107722577,LOC107709888,LOC107680238,LOC106574468 coding upstream 259179 11679913 ~ 11685059 (-)
G11246 NA non-coding downstream 117926 11293215 ~ 11300016 (-)
LOC122359499 LOC107689414,LOC107722600,LOC107585244,LOC107688455 non-coding downstream 247710 11167903 ~ 11170232 (-)
G11237 LOC107722600,LOC107585244,LOC107688455 non-coding downstream 250543 11165967 ~ 11167399 (-)
G11234 NA non-coding downstream 267438 11147248 ~ 11150504 (-)
LOC122359521 LOC107674200,LOC107602529,LOC107729365,LOC107584650,LOC107679329 non-coding downstream 297155 11116997 ~ 11120787 (-)
G11263 NA non-coding upstream 1936 11422670 ~ 11423431 (-)
LOC122328878 NA non-coding upstream 19268 11440002 ~ 11440899 (-)
G11280 NA non-coding upstream 33524 11454258 ~ 11455403 (-)
G11281 NA non-coding upstream 35592 11456326 ~ 11456854 (-)
G11292 pik3r2,LOC107688475,LOC107586063,LOC107722495,LOC107680216,LOC107709897,LOC107550618 non-coding upstream 91894 11512628 ~ 11513282 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 12242 11379243 ~ 11405700 (-)
trnau1apb LOC107688461,LOC107585172,LOC107722553,LOC107680226,LOC107589802,LOC107718075,LOC102202587 other downstream 78331 11335718 ~ 11339611 (-)
LOC122359462 NA other downstream 515317 10897549 ~ 10902625 (-)
LOC122359216 tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415 other downstream 556347 10767974 ~ 10861595 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other upstream 20256 11440990 ~ 11445113 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other upstream 26355 11447089 ~ 11453203 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other upstream 155657 11576391 ~ 11577516 (-)
hltf hltf,LOC107688483,LOC107722619 other upstream 171707 11592441 ~ 11614938 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other upstream 1368790 12789524 ~ 12838093 (-)

Expression


Co-expression Network