msl2a (LOC107722612,LOC107688489,LOC107584967,LOC107709889,LOC107680240,LOC107550607,LOC107709890)


Basic Information

Item Value
gene id msl2a
gene name LOC107722612,LOC107688489,LOC107584967,LOC107709889,LOC107680240,LOC107550607,LOC107709890
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11685777 ~ 11690923 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222120.1
GGTCCGATGTTAAAGTCgcaatcatttatcattttagtttGCACATCTGATTCATATCGAACTCAAATGCAAAATGACAAGGCAGTGGGTCCTGAGAAGCAGGAAAAAGCACTGAAAAGCACTGGCCTATAGATGCCTCTGCTCGCAGCAGCGTGTGGTTAATACAGTCAGACACTAGGGGGCAGTAATCACCGGATGCTGCGTGTAATTCCAGGCGCTCTTTTACGCTTGTTTGGTATTGTTCCTCTCAGGATGCAAAAGTTAACAGAGGAATAATAAGCAACGAAACTGGCTCTTAGCATAGgctaatgtatgtaaatattttgtagcGTAGCCGACGCTACGTAAACATATCACTCAAACGGGACTTTGTCACGCTACTCGAGGAGGGAAAAGCGCTCTTATTCAGCAACGCGAAGAAAAGTGCAGATAGTATTAGCTAGCAAGCGAACTAGCAACCAGGCGGATTGTGATTTGTTCAGATAAACTTTAAAAACGCTCGCTGTGGTGGACTGCTTCAAGAAACTATCTGTTGTGTGACACggcttttgttctgtttttccattttgtgtttgtggACCGTTTAAGCACAGAGCTCGCCCCGCAGACAGCAACGCTGCAGCTCGAGGCCTGCCGTGCCTCTCACTAAAATGCCGTTTATTGTCCAGTCCTTCGTTTTTATCACGAAAGCTCTTTCCGCTGAGGCGTCTGGGATCTGACAGCGGAAAGCAGACTCTAGTCTGCGCTGTGCATCTCTTACGCCGGCGCATTATCACCGGACCGACCGTCTGGAGGGTCTTCTCGATATCCAGCAAAGCTTTGACATGTTAACAAGTCGACGACTCGAAGCCGCTCATCTGCTTGCGAGTCATGTCAAATTACACTCTTTGTTTGAGGCGTTGGGTGAAGCCTGGTTGATTGTGTTCTCACAGTTCTCGTGTATCGGGGGTCTGAGCGAGCCTCGCTGTCAGTAGTCGGATCAGCCCGCTTCTCTCGTCCCGGCGTTGACTGATCCCGCCGAGATGAACCCGGTGAACGCCACCGCGCTGTACGTGTCGGCGTGCCGCTCTCTTCTGCAGTGCGACCCGAAGGACCCGGGGACGTACGGAGGGCTGTTTAACGTCCTGCCTTTCTTCAGAGACTCCCTCTCCTGCTTGGTCTGTGGGAATTTGCTTCAGGATCCAGTTGCTCCCAAAAATTCCTCCTGCCAGCACTATGTTTGTAAGGGGTGTAAAGGCAAGAAAATGGTATTGAAGCCATCGTGCAGCTGGTGTAAAGACTATGAGCAATTTGAGGAGAATAAACAGCTCCAGATTCTGATCGAATGCTACAGGAATCTCTGCGAGTGTGTCTTGGTGTGTGTCACAACAGAGCAGTGTGCCTCGGGCGTCAAGGGTTACCCTGAGGTCATGAAGATGCTGGAGGAAGTGTTGGGGCTGAGTCAGGAACAAGAAGACCACAGTCCTGTCAAAGACACTTTGGATGTTCCTAATCTCAAAACGGAGACAGACCCTTCGCAAAACTCTACCGACGTCAACTTGACTGATTCGGACAAACCCTCTGAGCAGATCCAAGCTAAACTAGAGCCCCCTGAGCCTGTCGCTGCCGACGGATTTCAGAAATCTGACTCAGAAAGACACATGGGTACTAACAAGGTGAAGTGCAAAGTTAGTCAAGAGACGAGCGTAGACTCGTTGCAACTCAGTGCAGAGAGCATGAGCATCCAGGAGGACCTCAAACCTGACTTTACGAGCAAGGAGTTGATGTGGGGACAGACTAAATCGACACCCGAGCAGTGTCAGGACTCATTACGGTTCCAAACCAGCGGCGCCCTTGCACCGGGACACCCACCCCGACCTCAGACGGGCCTGACGGGCCTCGCCACAGCCCACAGAAAGGTGCGCCTGAGCCTAAAGCGCTCTCGCTCTGAAAGCGACAGCGAGATGCTCCAACCTCTGCCCATCACCAGCCTCATCCAGGGGCCATCGGTAGCGGCCACAGCTCCACCGAAAGCAGCGTTTGAACCCAAAGCGCCCTCCCCGCCTGCTGTCGTGCTCACTAACGGGGGCGTTTTGAAGGTTAATAAGGCCGTGCTGGATTCAACTAAAAACATCCAGATAAACACCGACCCGGGTAATAAGAAAGTTCAGGCCAAGTCTAAAGTGGCAGTCCCGAAAGCGAAGGCCAAGGCGAAGGACAGGCTGCTGTCAGCTAGCGTTTTAGCGGGACAACCAGGACAGCCCCCTAAAGTCGCCTACAAAAAGACGCAAGAGAAAAAAGGATGCAAGTGCGGACGAGCCACTCAGAATCCAAGTGTTCTTACCTGCAGGGGTCAAAGATGCCCCTGCTACTCCAACCGTAAGGCCTGTTTGGACTGCATCTGCAGGGGCTGCCAGAACTCATACATGGCCAACGGGGAGAAGAAGCTGGAGGCTTTCGCCGTGCCCGAAAAAGCCCTGGAGCAAACCAGACTCACTCTCGGAATCAACCTCACCAGTATTTCCGTCAGAAACGCTGGCACGAACGCTGCGGGGGTTCTCAGTCTGTCCGCAGGTTCCCCGATGGCTTCTTTCCTCACGTCCAGCGCAGACGAGGACCAGAGTTTCGAAGACGCTCTCGAGATGCATTTCGACTGTTAGCTGTCCTGCtactgatctctctctctctctctctctctgtctctctctctttcaaccGTGGTTTATGTCGAACAGAAATTGTTTGCCAAAACTCTTGTCTGTAGTTTTCATGTCCGACCTCTACCATCACACACGCACTGCTGTAATGGAAAGTTACTGTGAAGCTGAGCGTTATggcatatttagtttttacttttgaaGGAACCGTTCGCTTTTTGCGCGGCTGTTTTACTCGCAGTGAACTTAGGATCTGATCAAcgactgttgttttttttttttttttttttttttttcttgaaacgtTCGATGACCCAAACcttaaaatgaatttgtgtGATAAGTTTCTtgggtcacacacacatagctcATCATAAGCTGTCCCAAAGCGGTGATTAATGTGTTTACATCCTGTGGTgaaattttgttttcaaaattattttttaaatatatatgaatatattgcTTCTAAACATTCATCGGAGGTAAAGTTATATACAGCTGTCTGTAATGCCTGTTAAACGTCAGATAAAATAACAACTTACTAACGGTGGAAAATGTAGCACTTAGTCCCAATAGTGTTGATAGGTTTAGACACCTGTcctggttatttttatttcattttttttttaatagatggTTCCTTATTTTTCTGAATGGGAAGTAGTGCCGTGTcactttttaattcatattccAGCTTTGAACAAAAGACGTTTCGTAAGAATGATGAAGCACAAATATGTCACAAAAGCTATATTCCTCGGACTTCGAGAGACGCCGATGCGTTATATCCTCACTATCGTTCATTGTTCGTTCGGACTGAGCTGATTGTTTTATCATTACAGTATCTGCAAAGATTTCTCAAACAAGTGAATGTAAGTGTGTTCGGTGCGATGCCTGAGAATGTATTCGAGGCAgtgatgtttttaaagcaatataagAATGAAAATGTTAGATCTTATAACCCCCACGCAAAGTCATCATATTTGTTTTGATGCAAACTGTAAAGGAGTATTTGGAGATGTTATGTTGAGCCCCTTTTAGCACTCGTTCATGCCTCTTTACTCTGATCCTGATTagttgtgtttgtcttgaggTTGTGATGTGATTACTGTTCTAGGgaccaaaactagaaatacgtGTTGAGAAAGGTCAGTGAACACGTGTTTACTGTTACGCTGCGCCGTTTCTTGTCTTATGTAATGAAGCGGGGTAGACAGTGCTTCATCCGTATCCTTAAATATGCTTGAAAACTCTATCAGTAGGGCTTTGACCAAATATCGAAAAGTTCTTCTAGTTCAGTCTCGGATCTTAGTGGGATATCGTGTTGTATTTTCAAATCGTATAGTTTGGTAGCGTTGTTTTATTCCTCCCTTTGCTTTTCAATGGTCATTACTTGAACTCAGATTTTAGTTTCtcgattattttttgtttttttgaattaCTGGAGAACCTCTTATTATTGCTGGTTTATTCACTGCCacattgaaataatgaaaattgcAGAAAgcgacaaaaataaattatagttttttatttcttgtttttcaaaA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MSL2-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222120.1 True 4189 mRNA 0.46 2 11685777 11690923

Neighbor

gene id symbol gene type direction distance location
stag1a stag1a,stag1,LOC107722576,LOC107688487,LOC107586054,LOC107709887,LOC107680237 coding upstream 5855 11640359 ~ 11679922 (+)
gyg1a LOC107709894,LOC107722604,LOC107688484,LOC107550614,LOC107680244,LOC107585020 coding upstream 80144 11598887 ~ 11605633 (+)
agtr1a LOC107584999,LOC107722527,LOC107688540,LOC107680245,LOC107550594,LOC107709880 coding upstream 87127 11593151 ~ 11598650 (+)
LOC122354667 NA coding upstream 97873 11585825 ~ 11587904 (+)
rab3aa rab3aa,LOC107585037,LOC107722633,LOC107688479,LOC107709895,LOC107550615 coding upstream 100067 11581166 ~ 11585710 (+)
ppp2r3a ppp2r3a,LOC107722551,LOC107550604,LOC107732512,LOC107680219,LOC107584952 coding downstream 19261 11710184 ~ 11782407 (+)
fndc3ba fndc3ba,LOC107688494,LOC107584937,LOC107722494,LOC107732513,LOC107680249,LOC107550601 coding downstream 96769 11787692 ~ 11899378 (+)
tnika tnika,LOC107688496,LOC107722539,LOC107680235 coding downstream 255239 11946162 ~ 12024898 (+)
slc2a2 slc2a2,LOC107550598,LOC107680265,LOC107722632,LOC107586013 coding downstream 334353 12025276 ~ 12033082 (+)
eif5a2 eif5a2,LOC107584931,LOC107722594,LOC107688499,LOC107680233,LOC108442333,LOC103022137,LOC105908511 coding downstream 344071 12034994 ~ 12039475 (+)
G11207 LOC107688485,LOC107585026,LOC107550612,LOC107709892,LOC107722651 non-coding upstream 66914 11614241 ~ 11618863 (+)
LOC122328936 NA non-coding upstream 72211 11609251 ~ 11613566 (+)
G11191 NA non-coding upstream 228913 11456326 ~ 11456864 (+)
G11190 NA non-coding upstream 230369 11454258 ~ 11455408 (+)
G11189 NA non-coding upstream 231666 11453571 ~ 11454111 (+)
G11419 NA non-coding downstream 409952 12100875 ~ 12101126 (+)
G11505 NA non-coding downstream 646744 12337667 ~ 12339049 (+)
G11590 NA non-coding downstream 854430 12545353 ~ 12545592 (+)
G11593 NA non-coding downstream 923452 12614375 ~ 12614596 (+)
G11595 dsela,LOC107679326,LOC107584692,LOC107728919,LOC107714854,LOC107674195 non-coding downstream 925072 12615995 ~ 12621414 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 178073 11482104 ~ 11507704 (+)
rps28 NA other upstream 241206 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 344666 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 347308 11303678 ~ 11338469 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other upstream 421543 11229760 ~ 11264234 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other downstream 217150 11908073 ~ 11937590 (+)
LOC122358236 NA other downstream 932900 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 1177006 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 2484441 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 3055184 14746107 ~ 14753161 (+)

Expression


Co-expression Network