atr (atr,LOC107677746,LOC107700496)


Basic Information

Item Value
gene id atr
gene name atr,LOC107677746,LOC107700496
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8630412 ~ 8651546 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222148.1
TCGAGAGTGCGAAAATACTTTTGAAAGTGATGCGCGTGTGGAACCGGAGGATGGGCTTTCTTTGCGTCTGCATGTTTGTCTAAAAGTTTTTTAGGTCACCTTGgcctaaacattttttatgtatatagtaAACGCGTATTTACCTAGCAAAAATGGAGCAAGGACTAGAGATGTCAGCAATGATTCCTGCATTGCAAGAACTAGCCAGTGCTAGTTCGGCTGAGTACAACCAGGCTGTACAGAAACCTCGTCAGATACTGTGTCAGTTCATTGACAGGATACTGACAGATGTTGACGTCGTTGCCCTGGAGTTGTGTAAGAAGACCAGTTCTGAGCCAGCGTGTGTGATGCTGCTGGATTTTGTGCAGCACATTATTAAATCCTCTTCATTAATGTTCATAAACCCAGCGTGTCTTTCAGATCACTTCAAAAACGCAGAGAACAGCTGCTCTGATTTCAGTAAATGGATCATCAACCGCCTCTTGCGAATTGCTGCCTGCCCAGAATGTGAAGATCTTCACGGGAAGATCTCGTCAGTCATCTGTTCCTTGTTTCATCTATTCAGAGCCAAGGGTCCGGTCCTATTTGGCCTTTTTTCCACGGAGCTAATATGTTTAATGCAAGATCTAGTACATATCAATCTCACAGACAGGCCTTCAACGCAGTGGCCAGTGGTGGTGGAACGCTTCTCCATCAGGTCTGGAGATTCTGCCGTTTACCTGACCCACACCGTTCTTAATCTGTCCTCACACGCCTCAGCTCAGGCATTGTTAATAGCTTCATTAACAGTGATGACGGATATTTTGCAAGGCCTTTTCTTCCCAAGAGAAGTGGCCATCATATGGGACTCTACTTGCCTTATAATGTTTCATGGGAGTCCTAGACTTAAAGCAGCGTCCATGGTGCTTTTAACTAGCATTGTGACTCTGGGAGGCTTCCCTGAAGGCCATTCACAGCCATTTTTCTCTGCTTATTTGCATCTCCTCGACTCCTTGCCCGCTTTTGAGGAGTCAGAGCTCAGAGCCTTTGGCAAGGAATTCCAGAAGCTTTCTCAATGGGTTTTCCATCCCGAGGAGGGCACTCACGACAGGTTTGAGAGGGTCCATGTAAACATGCTTATGGAGAGGCTTGAGAAACTGGTGGTTGGTGGCACACTAGAGCAGCTGAAAGTAACAGAGGTGAAAGCTACACTTTGTGAAGTCTTCTGCTTTGTCCTTGAGTTTGTTCCTCTCGGATACGAGTGTGCAGTGCAGATCCGCAAGGAGAGAGTCGCAGCCATTTGCAAAGCTCTGATTAAGACCATTGGAAACCAGGAGCAGCAGGAGCAAAGTGTGGAAGGCTACTTGTACGCCGCTCTCAAGACAGAAGCCATCGCTGCAGTGCAGGATTTGCAGGCTGGTGTTTCTGACCCTGCTGATCCTAGTATGTATGAAGACGATGTCCCAACCAAACGCCCAAATATCTCTCTTCCAACCCAGCTAAGGAGCGGGGAAAAGTCTCAGCCGATGCAGGTGGACATGAAGAGCAGAAGTGAGGTGTGGGCAGCAGTAGACGGCAGACTGGATGAGCTGCTGACCCAGATGAGGGAGCACAGAGCGAGCCAGTGCGTGAGCGCCGTGCAGGGACTGGCGGTCATCTCCCATCTGGCTGCACTTTGCTCAAAACACGGAGTACAGAGTGGCAGAGGAGAGAAGACATCAGTGACCTCAGATGCAGTTCAGCTCATTTGGTTAAAGCCTCGGATTTTGGCTCAGGTAGTTGAGAGCTGCCGCACCGTGATGGCAAACACCTCTAATGATGAAGATCTAAAGCCTTTGGTGGAGGGTACCATCCAGATCCTTGATGCTGTCCTTTACCTTAAcaCCAATAGTCAGAGTGACACAGGTTTTTACAGGAATATTTGTGCTCTGCTCTCGATCCCATGGGTGCTTGAGCATTCTTCACAAGCAGTTTATCAGACGGCCTCATTTCCTGCAAGCCTGATTGCACTCGCCCAGAAACTTGCTCCTGTCTATTCTGTGCAAACCAGAGCacgctgtgtgtttctgcttGCCCTGCTGTCGAAGAGTGTTTGCAGTGACTGGCGGTCATCGGTTTACCGCTGGACCCTGCAAAGTAATAGCGAAGACGAGCGGGCCAGTGCTGTCAAAGGCTTCCCCCTTCTGCTACATCACCTAGGAGTTAAATCCTACAGCCTCATCCACGAGTGTCTCCTGAGCAGACTACAAGACAGCTCATCACAAGTGAAGATGGAGCTGGCGGGTATTACGGGGCATCTAGCCTGCTGTTTGTCTGAGAGCTCACAACTGCAGGTCCCTCAGGAGATGATGCCGTCCCATCAGCAGCTCTGTGCTGGTCTCAGCATTTCAGACTCCCACCCCAGACAGACCTCCTCCATCGGAGCCTCCATCCTCACCCCATTCCTTCTGCTGCTTAAGCCTCTAGAGGACAAGAAGGTCAAGCAAGCTTTCATCAGGAATATACGGCACTTGTTCAAGCATGTGGATCTGGGTAACAGTGACCCTGACACAAAATCTCTGGTTAGCGCATTAGTCAACCTCATTGAAGACCCTGACCAGGACGTCCGCATAAAGTTCGGCCAAAATATCAAGAATCTTCTGGAGTTTTGGAATGGAAATGGCTTCCTGAAGGAGCTTCTCGTGTCCAGGCTAAAAGAAGCTTATACGAATGCTAAGACCTCAAGAAacaatgaactcaaaaacacaCTCATATTAACCACTGGAGAAATTGGAAGAGCTGCTGAAGGGAACCTGGTGTCTTTTGCTCTGCTTCGTCTTCTTCACTGCCTGCTGTCCAAGTCTAATCCTATTTCGGTAGCAGCCTACACAGAGATCCAGGCTTTGGCCACCTGTAGAGACCTCAAATTGCAGTCCTTCTTCAATCAGTACAGGAACCCAATATGCCAGTTCTTGGTGGAGTCTTTGCATTCGCGACATGTCACGGCTCTGCGCTGCACACCAGATCAGAGCAGCGAGGCTCTCCAGGAGGAAGCAGCCCATCAGAGGGAGCTGGCACTGGACATCCTGTCTCATGTGGCACATGTCTTTGATTTCCCTGACCTTAATCGTTTTCTCAATCGGACACTACAGGTCCTTCTTCCTTTTTTGGCGGCCAAGGCCAGTCCTACAGCTTCTGCCCTGATCCGCACTATCGCCAAGCAATTGAATGTCAACCGCAGAGAAATGCTCATCAAtaacttcaaatatatattctctCATCTTGTGTGTTCCTGTACCAAGGAGGAGCTGGAAAGAGCCTTCCACTACCTTAAGAACGAGACAGAAATTGAATTGGGTAGTCTGTTGAGACAAGATTTCCAAGGTCTTCATAATGAGCTGCTCTTGCGTCTAGGAGAACACTACCAGCAGGTTTTTAATGGGCTTGCTATTTTAGCTTCTTTCGCCTCCAGTGACGACCCCTACCAAGGCCCAAGAGAAATCACCACCCCAGGATGCATGGCAGATTACCTGCAGCCCAAGCTCCTGGGCATCCTGGCTTTCTTCAACATGCAGCTGCTGAGCTCTAGTGCtggagaaaaggagaaaaagaaaatgGCTCTAAACAGTTTAATGGCTTTGATGAATCTAATGGGTCCAAAGCACATCAGCTCCGTCCGAGTGAAGATGATGACCACACTCAGAACTGGCCTGAGGTACAAGGATGACTTCCCAGAGCTCTGCTGCAGGACGTGGGACTGTTTTGTGCGCTGTCTTGACCCGTCCTATCTGGGTCCGCTTCTGAGTCATGTAATTGTCGCTCTATTACCTCTCATCTCCATCCAGCCCAAAGAGACGGCGGTGATCATGCACTACCTCATAGTGGAGAACAGGGTGGAAGTGCAAGACTTTCTACACGAAATCTACTTCCTCCCTGACCACCCAGAactcaaaaacattcacaagGTCCTTCAAGACTACCGTAAGCAAACCTCAAAGAGCAGTGACATGCAGGCAGCGCTGCAGCTCTCCATGCGTGCCATCCAGCATGAGAATGTGGACGTACGCATCCATGCGCTCACCAGCCTGAAGGAGATGATATACAAGAACCAGGATGCTCTGTTAAAGCTTGTCTTGGACAGTGAGATGGTGGAGCCAGTGATCTCTCAGTTAGTGACGGTGTTGCTCCGGGGCTGCCAGGACGTCAATCCTGAAGCCAGGCTTTTATGTGGGGAATGCCTGGGGGAGTTGGGAGCCATTGATCCTGGTCGACTTGACTTGTCACCCGCTGACACTCAGGGAACTGGCTCGACATTTGTGagtgGGATTGATGATTCAAACTTTGCCTATGAACTACTGACAGAGCTGACCAGAGCTTTTCTGGCCTATGCGGATGATGTGAGAGCTCAAGATGCTGCTGCTTACGCCATGCAGGAGCTGTTGTCATTATTTGAATGCCGGGAGGGCAGGACTGATTCGCCAGGTCGTCGTCTATGGAGAAGATTCCCAGAACAGGTTCAGGAAATCCTGGAGCCGCATCTCAATACCAGGTATAAGAGCTCTCAGAAGGTGGTGAACTGGTCTAAGCTGAAAAAGCCAATATATCTCACCAGCCGTGGAAGCAAATTCTCTGACTGGTCTGCAACGTGGGCAGGATATCTCATCAGTAAAGTTAGACATGAACTTGCCGGCAAAGTGTTCAACTGCTGTAGCTTCATCATAAAGCACGATTACAAAGTGACCATTTATCTGCTGCCCCATATTTTGGTCTATGTGCTGATCGGATGCACTCAGGAGGAGCAGCGAGAGGTGAATGAAGAGATGATGGCAGTCCTAAAGGAGGGCGACCCTCGGTTAGTCCGCCTGCAGGAGAACGCCTCCAGTCTGAGTCAGCTCAGCACACAAACCGTCTTCTCCATGCTGGACCATCTCACTCAGTGGTCCCGCCACAAGCTGCAGAGCCTGAGTACCAACAAGAGGACAGGCAAACATGCCAGAGAACAGCCACAGACCACAGGCCCAGAGAGCAGCGAGTATCAAAGTGTAGTGGCCTTTCTAAACAGCATTCCTCAGGATGTGCTGGCCAAGGCATCCTTCCGCTCCAGAGCCTACACACGCGCTGTCATGCACTTTGAGTCTTTTATTCGTGAGAAGAAGCAGAACATTCAGGACCATCTTTCATTCCTCCAGAGCATGTATGCAGCCATGCACGAGCCAGATGGCGTGAGGGGCGTGAATGCTCTGAGGAAAGAGGAGCCGTCATTGAGAGAGCAGATCCTGGAGCATGAGAGCATCGGATTACTGCGTGAATCCACTGCCTGCTACGACAGAGCCATCCAACTCGAGCCAGACCAGATCGTCCATTATCACGGTGTTATGAACTCTATGTTGGGTCTTGGTCAACTCTCTACAGTAATAACCCAGGTCAATGGAGTTCTGGCAAGCAGGCCACGATGGAAATCCGATCTGAATGCTTACCGGGTCGAAGCAGCATGGAAGCTGTCAAAGTGGGACTTAGTTGAGGATTATCTTGCCTCTGattgtaAGTCCAGCACATGGGGTGTCAGACTTGGCCAAATGTTGCTGGCTGCCAAGAAGCAAGATTCCGAGGCATTCTACGAAAAACTTAAGATAGCCAGGAAAGAACAAGTTGTCCCTTTGTCAGCAGCCAGTTTTGAGTGTGGCACATATCAGAGAGGATACGAGTACATTGTCAGGCTGCACATGCTGTGTGAGTTGGAGCATGCCTTCACTGAGCTGCAGAAagaaatcacagaaaaaaagccGGAACCCAAACTCAACTCGGACGCCCGTCAACTTATGACCCAAAACTCGTTCAGAGCCAAGGAACCCATCCTGGCCCTGCGGAGAGCTCTTCTCAATCTCAGCAAGGGTTCTTCGTGTGAGGAGCAGGTCGGTGAGTGCTGGCTTCAGAGTGCTCGGGTGGCCAGAAGAGCTGGTCATCACCAAACAGCTTTCAACGCCCTGCTCAATGCTGAGAATTCCCACCTCTCTGAGCTCTTCATTGAAAAAGCCAAATGGCTCTGCTCTAAGggTGATGTGCATCAGGCTCTGATAGTCCTGCAGAAAGGTGTGCAGCAGTGTTTTCCTGATGACCAGCCGCTCACGGACCCTAAGAGAATCCAGATAAAAGGAAATGCCATGCTGCTGGTGGGAAGATACATGGAAGATACGGCCAACTTTGAGAGCAATGCTATAATGAAGACTTATAAGGATGTCACGCATCTGTTACCAGAATGGGAGGATGGAAATTTCTACCTGGCTAAATACTATGACAAGGTGATGCCCATGGTCACTGACAACAAACTGGAAAGACAGGGCAACCTCATTCGTTATATCGTCACATATTTTGGAAAAGCCCTGCAGTTTGGCAACCAGTACATCTATCAAGCCATGCCGAGAATGCTAACCTTATGGCTAGATTTCGGAGCCAAAGTTTATGAGTTTGAAAAAgCTGGCCGCTCTGACCGAGCCCAGATGCGTGCTGAACTCACAAAGATCAATTCTGTCATCAGCGAACACACCAGCAACCTCTCGCCCTACCAGTTCCTCACGGCCTTTTCGCAGCTCATCTCCCGAATCTGCCACTCCAGCAGCGAGGTCTTTTCTGTGCTGATGGAAATTGTGGCCAAGGTTTTCTTAGCTTACCCTCAACAAGCTATGTGGATGATGACGGCTGTGTCAAAGtccTCCTATCCGACTCGAATGAACAGATGTAAGGAGATTCTGAAGAAGGCTGTCAGTTTGAATGAGTCATTTGGGAAATTTATAGGAGATGCCAACAGACTGACTGACAAGCTGGTGGAGCTCGGCAATAAACCAGTGGATGGGAACAGCAGCACCCTCAGCATGAGTGTACACTTCAAAACGCTGAAGAAACTGGTGGAAGAGCCCACCTTCAGTCAGATCCTCATCCCCCTGCAGTCTGTCCTTATACCCACCCTGCCTTCCACTGGAGGAGCCAACCCCAAACATGACGCTTTTCCGGGACACTGGGTCTACCTCGCTGGCTTCGACGACACAGTGGAGATCTTGGCGTCCTTGCAGAAGCCAAAAAAGATCTCGCTAAAAGGCTCTGATGGAAAATTCTACACCATGATGTGCAAACCTAAAGATGACCTGAGGAAAGATTGCCGCCTGATGGAGTTCAACTGTCTCATTAATAAGTCTTTGAGGAAAGATGCAGAGTCTAGACGGAGGGATTTGCACATTCGGACATATGCGGTCATCCCACTGAATGAAGAGTGTGGCATAATAGAGTGGGTCAATAACACGGCGGGTTTACGCCACATCCTCACGAAGCTGTATAAAGAGAAAGgGATCTATGTCAGTGGGACAGAGCTGCGAAAGCTGATTTTGCCAAAAACAGCATCTTTTCAGGAGAAGCTGAAGCTGCACAAAGATGTGCTCTGTGCCAGACACCCACCGGTTTTTCACGAGTGGTTCTTAAGGACATTTCCTGATCCTACCTCTTGGTACAACAGCAGGTCTGCTTACTGTCGCTCTACTGCCGTCATGTCTATGGTGGGCTACATTCTTGGTCTTGGCGATCGCCACGGAGAGAACATTTTGTTTGACTCCCTGACTGGAGAGTGTGTCCACGTGGACTTCAACTGCCTCTTCAACAAGGGAGAGACATTTGATGTCCCTGAGGTGGTTCCCTTCCGGCTCACTCAGAACAtggtgcaggcgatggggccaATGGGCTCAGAGGGTCTGTTCAGACAGGCCTGTGAAGTCACACTTAGACTCATGAGGGACCAGAGAGAGCCGCTCATGAGtgttttaaaaacattcctGCACGATCCCTTGGTAGAGTGGAGTAAACCTGTCAAGGGTTCCTCTAAGACACAAGTCAATGAATCTGGAGAGATCCTCAATGAGAAGGCTAAGACTCATGTTCTGGACATAGAGCAGCGTCTTCAGGGAGTGATCAAGAACAGAAATAAAGTGATGGGCCTGCCTCTGTCCATTGAGGGCCATGTACACTACCTCATTCAGGAAGCCACCGATGATAACCTCCTGTGCCTCATGTACCTCGGATGGGGTCCTTATCTGTGATCGACATTTGCACTTGAGTCGGAAAacataatatttctgtttatgtcTTGAATCCAAAAATGGTTATGTttgtcagtgttatttttagtgttcTTCAAAGGCTTAATTAAATTTTGTCCACATTTCAAAAATCTTCA

Function

symbol description
atr Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within several processes, including determination of left/right symmetry; intrinsic apoptotic signaling pathway in response to DNA damage; and regulation of heart looping. Predicted to be active in nucleus. Is expressed in hindbrain neural rod; midbrain neural rod; optic vesicle; somite; and tail bud. Human ortholog(s) of this gene implicated in Seckel syndrome 1 and pancreatic cancer. Orthologous to human ATR (ATR serine/threonine kinase).

NR:

description
serine/threonine-protein kinase ATR

GO: NA

KEGG:

id description
K06640 ATR; serine/threonine-protein kinase ATR

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222148.1 True 8176 mRNA 0.49 47 8630412 8651546

Neighbor

gene id symbol gene type direction distance location
atp1b3a atp1b3a,LOC107700561,LOC107563307,LOC107710617,LOC107732952,LOC107677716,LOC107553263 coding upstream 30817 8590241 ~ 8599595 (+)
clcn2a clcn2,clcn2a,LOC107732945,LOC107710554,LOC107677884 coding upstream 143508 8439879 ~ 8486904 (+)
cc2d1b LOC107563292,LOC107710553,LOC107700553,LOC107677533 coding upstream 227198 8386877 ~ 8403214 (+)
elovl1a elovl1a,LOC107553254,LOC107732201,LOC107700551,LOC107710545,LOC108438881,LOC103047025 coding upstream 247969 8373238 ~ 8382443 (+)
glula LOC107563291,LOC107710552,LOC107700548,LOC107732203,LOC107553252 coding upstream 311945 8315131 ~ 8318467 (+)
amer3 LOC107710619,LOC107700565,LOC107677756,LOC107732953,LOC107553265,LOC107569737 coding downstream 371 8651917 ~ 8662323 (+)
LOC122361595 LOC107710620 coding downstream 179274 8830820 ~ 8841734 (+)
LOC122359011 arhgef4,LOC107700563,LOC107710620,LOC107553266,LOC107732940 coding downstream 196781 8848327 ~ 8878100 (+)
vav3b vav3b,LOC107700567,LOC107732951,LOC107677852,LOC107553269 coding downstream 239227 8890773 ~ 8929310 (+)
col11a1b col11a1b,LOC107680048,LOC107594685,LOC107710593,LOC107564536,LOC107700498,LOC107745694 coding downstream 436148 9087694 ~ 9154434 (+)
G10284 LOC107710615 non-coding upstream 41338 8587377 ~ 8589074 (+)
G10271 NA non-coding upstream 68899 8560098 ~ 8561513 (+)
G10226 NA non-coding upstream 101705 8522402 ~ 8528707 (+)
G10219 pbx1a,pbx1b,LOC107677498,LOC108272157,LOC107564502 non-coding upstream 367582 8219265 ~ 8262830 (+)
G10200 NA non-coding upstream 540941 8083536 ~ 8089471 (+)
LOC122356731 NA non-coding downstream 111293 8762839 ~ 8765451 (+)
G10371 NA non-coding downstream 147045 8798591 ~ 8798996 (+)
G10374 NA non-coding downstream 228396 8879942 ~ 8880453 (+)
G10431 NA non-coding downstream 277958 8929504 ~ 8930073 (+)
G10433 NA non-coding downstream 288423 8939969 ~ 8941186 (+)
G10212 NA other upstream 522635 8106865 ~ 8107777 (+)
G10108 NA other upstream 1048027 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 1330311 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 1524620 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 1643293 6986298 ~ 6987119 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 511065 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 1095024 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 1260082 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 1506986 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 2011183 10662729 ~ 10665110 (+)

Expression


Co-expression Network