crygn1 (crygn1,LOC107600194,LOC107713687,LOC107655847,LOC107558278,LOC107696799,LOC107729968)


Basic Information

Item Value
gene id crygn1
gene name crygn1,LOC107600194,LOC107713687,LOC107655847,LOC107558278,LOC107696799,LOC107729968
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 25216488 ~ 25219623 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222921.1
ATGTCTCAGTATTCAGGGAAGCATCACTGCATCTTCTCCCAGATAGTGTTCTACGAGGGGAAGTGCTTCACGGGCCAGAGGCTGGAGGTGTTTGGAGACTGCGAGAACTTCCAGGACCGCGGTTTCATGAACAGGGTGAACTCCATCCGGGTGGAGAGCGGGGCCTGGGTGTGCTTCGATCATCCCGATTTCAAGGGACAGCAGTACATGCTGGAAAAAGGAGAGTATCCCGATTTCCAACGCTGGAACGCTCACAACGATCACATGGGCTCCTGCAAGCCAATCAAAATGCACGGGGAGCACTACAGGATGGAGCTTTATGAGGGTCAGAACTTCACCGGTCAGTGCGTTGAACTGTGTGACGACTGTCCCTTCCTCCAGAGCACCGGATTCAGCAAGAACTGCCTCAACTCCATTAAAGTCTATGGAGACGGAGCTTGGGTCATGTACGAGGAGCCGAACTACCGTGGCCGCATGTACATCGTGGAAAGAGGAAACTACTGCTCATTCATGGAATGGCAAGCTGAGAATCCCAACATCCAGTCTATCCGCAGGGTGGTTAACTATTTCTAAACTGTTACATCCCAATACAGCCTCGCTCTCAAAGAAAAATCAATGTTTCAAAGCACACTTACCCCAAATAATCAATCAAACGAACCCGAACTTCCATTTATATTACTGAATCACACGGCTATGTGCCTTTTATCTTTACGGAATTTTAACGATGAATCggttatttgaaaagaaaacacaattaGCACAGGAATAttcttgtatgttttattttgtatttgtactgAGGCAATGAGTTGAAATAAAGGTGAACTG

Function

symbol description
crygn1 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Orthologous to human CRYGN (crystallin gamma N).

NR:

description
PREDICTED: gamma-crystallin N-A

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
K23483 CRYG; gamma-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222921.1 True 828 mRNA 0.47 4 25216488 25219623

Neighbor

gene id symbol gene type direction distance location
lrrc24 lrrc24,LOC107713676,LOC107655866,LOC107600207,LOC107757831,LOC107599237,LOC107663504 coding upstream 105712 25089791 ~ 25110776 (+)
eef1da eef1da,LOC107713671,LOC107757829,LOC107663523,LOC107599238,LOC107600209,LOC107655868 coding upstream 153978 25051270 ~ 25062510 (+)
trnal-uaa_14 NA coding upstream 165849 25050557 ~ 25050639 (+)
trnal-uaa_13 NA coding upstream 166802 25049604 ~ 25049686 (+)
trnal-uaa_12 NA coding upstream 167356 25049050 ~ 25049132 (+)
LOC122363040 abhd4,LOC107713680,LOC107663512,LOC107655861,LOC107729967 coding downstream 80577 25300200 ~ 25304723 (+)
LOC122322894 zcchc2,LOC107757820,LOC107662991,LOC107599249,LOC107713659 coding downstream 195896 25415519 ~ 25419928 (+)
LOC122358952 LOC107586591,LOC107722548 coding downstream 351518 25571141 ~ 25574135 (+)
LOC122358930 crtc1a,LOC107709901,LOC107680255,LOC107722627,LOC107585074 coding downstream 361177 25580800 ~ 25591012 (+)
G15225 NA non-coding upstream 5672 25105703 ~ 25210816 (+)
G15226 NA non-coding upstream 9558 25199691 ~ 25206930 (+)
G15233 LOC107600201 non-coding upstream 59253 25149255 ~ 25157235 (+)
G15240 NA non-coding upstream 71482 25123300 ~ 25145006 (+)
G15236 LOC107558270,LOC107558271,LOC107713634,LOC107655863,LOC107757833 non-coding upstream 101350 25111261 ~ 25115138 (+)
G15392 NA non-coding downstream 245827 25465450 ~ 25595289 (+)
G15224 abhd4,LOC107713680,LOC107663512,LOC107655861 other upstream 41200 25170736 ~ 25175288 (+)
zcchc2 zcchc2,LOC107713659,LOC107757820,LOC107599249 other upstream 461897 24687556 ~ 24754591 (+)
G15065 rorcb,LOC107600225,LOC107757806,LOC107698501,LOC107713654,LOC107662989 other upstream 716803 24493438 ~ 24499685 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other upstream 966497 24241872 ~ 24249991 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other upstream 1119591 24083838 ~ 24096897 (+)
LOC122362952 LOC107713688,LOC107600193,LOC107558294,LOC100331938,LOC107729982,LOC107655843,LOC107696796 other downstream 2521 25222144 ~ 25236609 (+)
LOC122327519 hecw1b,hecw1,LOC107600217,LOC107662981,LOC108280656,LOC107576258,LOC107656133 other downstream 174533 25394156 ~ 25406903 (+)
LOC122362387 LOC107722547,LOC107680242,LOC107550619,LOC107688474,LOC107709878 other downstream 272637 25492260 ~ 25516180 (+)
G15410 crsp7,LOC107722610,LOC107688472,LOC107585090,LOC107550620 other downstream 379838 25599461 ~ 25599926 (+)

Expression


Co-expression Network