ncstn (ncstn,LOC107552665,LOC107671788,LOC107696591,LOC107726318)


Basic Information

Item Value
gene id ncstn
gene name ncstn,LOC107552665,LOC107671788,LOC107696591,LOC107726318
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22672101 ~ 22688316 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223611.1
GCGTCACGCGCCGAACAAGAGAGATCCGGAACCGGAAGAAAACAAGCGCTGCTTCAGCTTCATCTGCTGATCTGTGAATGAGGAAGATGGACAATTTAATATCAATAAACTGCGTTAAACTTCTGATCACCGCTTTATTTTACACACGTGTGTGTTCCAGCTCCGTGGAGCAGAAGATCTACGTGGAGCTGAATGAAACGGTTCCGTGCGTCCGGCTGCTGAACGCCACGCATCAGATCGGCtgtcagtCCTCTATTTCAGGAGACACGGGGGTCCTGCATGTTCTGGAGACGGAGTCGGACCTGGACTGGATTCTCAGCTCGGGACCGCATCCTCCGTACATGGTGATCATGGAGACGGCCTTCTTCAACAGTTCagtgatgatgaggatgaagaaCTCGTCCAGAGTGTCTGGAGTCGCTGTGATTATCTCAAAAACAGGCCTTGCTGATCATTTCTCACCCCACACGACCTGCCCCAACCAgaacacaggtgtgtatTCTGAGACTTACGGCTCTGAACTGGCCAACTGTAACGGGACCAAGTGGAATCCTCTCGGGAACGGACTCTCCTACGAAGACTTCGCTTTCCCTGTGTTTGCTCTGAAAGATGAGAATCAGACTCAGGTCATCCGTaagtgttACGAGGATCATAATCTGCGTGTGAACGGAAGCGCTCCTCAGTATCCTCTGTGTGCCATGCAGCTCTTCTCACACATGCATGCTGTGACCGACACCGTGACCTGCATGAGACGCACGGACCTGCAGAACCGCTTCAGCATCAACCCAgAAGTCCTGTGTGACCCGTTGAGTGACTTTAACGTCTGGACGTCCACGGTGCCCCTCAACAACAGCGCCAAGGGCCACGCGGCCAATCAGAGCGTCGTCCTCGCGGCGACCCGGCTCGACGGCAGGTCGTTCTTCTGGGAGCAGGCTCCGGCGGCCGAAGGAACCGTGTCTGGGATCGTCACCCTGTTGGCCGCCATTCAAGCCCTCTCTCCTGTCACTCAAGAAGCTCCGCCCCCTCGCAATATCTTCTTCACCTTCTTCCAAGGGGAAGCCTTTGACTACATCGGCAGCTCAAAAATGGTGTATGAcatggaaaaaaatgattttgttattGACTTGAAAAATGTGCACTCCATGCTGGAAATTGGGCAGGTCGGCCTGCGCCGTGGGCGGAGCCTCTGGATGCACACGGACCCCATATCCAGGAAAAATGACTCTGTTAATGAAGAGgtgttGGCTCTGATGAATAGACTGCAGTCTGTCTCTGTGGATCTGAATGTACCGGTGGGTCACCCGTCAGTCAGTCAGTCGCTGCCTCCCTCGTCTCTCCAGCGGTTTCTTCGAGCCGGACCAATCCCGGGCCTCGTGCTGGCGGACCATGAAACATCCTTCAACAACAGATACTACGAGAGCATGTACGACGACGCTGAGAACCTGAACATGACGTATCCTCCGGAGCTGAGTCCAGACGAGCAGCTGACCTACGAGACGGACGAGGCCAAGtctctggcAGAAGTGGCCACACTCGTCGCTCGCTCGCTTTACTTACAGGCAGGAGGACAAGAGAACAACCTGATCAACATCACCGCTGACCCTAAGATTgtcgCTCAGTTGCTGTATGGTTTTCTAGTTCAGAAGAATAACAGCTGGTTTCGGTCACTTCTTCCTCCTGAAGTCACTAAGAAAGGAGACAACAGCATCTTGAgctCTGGTCCTCCTCAGTTCTACATCGGCCTCGGTCCTCGCATCCACGGCCCGGTTCACAGCGTCACGCGCTTCGTTCAGTACATTCTGGCTAATCTGACAGGAAGCGTCACCAACCTCACCGAGAAGCAGTGCCAGAACCCCGGCGAGATCAGCAGCGAGAACAAAGACTTGTATGCGTATTTCTGGGTGTCCGGTCCGGCGGCGGTGAACAGCAGCGGAGAGCCGTTCTGCGTCCAAGCGTCTGTGCGTCTCTCTAAAGCCGTGTCTCCTGCCTTCGAGCTGCTGGAGTACGGCTCCACAAACTACTCCACGTGGACCGAGTCTCGCTGGAAGAGCATCCGGGCGCGCATCTTCCTGGTGGCCAGCCGGGAGCTGGAGatGTTAACACTGGGAGTGGGCGTGGCCGTGCTGCTGCTGTCTCTATTGGTGACGTACTTCATCAGCTCGAAGGCGGAGCTTCTGTTTAGCTCCACCCGTGAAACGTCCACAACGACCTACTGaacaaaaccagagtccaggaTCTCCAGCCGCTCATTCATTTCCcttcagaacacaaacacacttcagtTCACGAGTAATTTATTCAAAGCTGTCAAGACTCTTGTTGGTTTTGCCGCACTGGTTTTATCTGGGCTGGTCTGAACCGGTCTGGACTCTCCTGGAAAgttgttcatattttattttgttttttttgtcatcttttttttataattccagatgtttgttttctgaTCATGACATGGACGGGCACAAAACTAAAAGCtgatttttagtgtttaatgacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcaattCTGAATGCAGTGAGAATGTGCAATAGCTTACTGGTTTAGCTAAACCTCATCTCGACGTGTATCTctgttttttctgttctgtcGTACCTGAGCAGAGTCGATTCGCTGATAATAAACTCCAAACACAGACTGTCCTCGATGAATCACCGAATCATGTTTCCACTGAAGACGAGGAGCTTTAAACAACCAAATTAACTGCGTTTGTTCGTTTCTTAACTCCAGTTGAATGAAAGCTGTTTGATTAATGATGACATTATTTTTCTCTGAGAAACTGATGCCTTGAGAACCTGAATAAACATGACTTTCTTTTA

Function

symbol description
ncstn Predicted to act upstream of or within protein processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including caudal fin; central nervous system; gill; heart; and otic vesicle. Used to study vitiligo. Human ortholog(s) of this gene implicated in Alzheimer's disease; hidradenitis suppurativa; and schizophrenia. Orthologous to human NCSTN (nicastrin).

NR:

description
nicastrin

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06171 NCSTN; nicastrin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223611.1 True 2882 mRNA 0.51 17 22672101 22688316

Neighbor

gene id symbol gene type direction distance location
pnp5b pnp5b,LOC107730396,LOC107574318,LOC107750205,LOC107549813,LOC107684565 coding upstream 6189 22659064 ~ 22665912 (+)
foxl2b LOC107574316,LOC107730743,LOC107683772,LOC107750224,LOC107549802,LOC107684570 coding upstream 31507 22638886 ~ 22640594 (+)
LOC122323627 NA coding upstream 70647 22592599 ~ 22601454 (+)
LOC122357060 NA coding upstream 100101 22562512 ~ 22572000 (+)
epb41l3b epb41l3b,epb41l3,LOC107689342,LOC107729731,LOC107750217,LOC108427206 coding upstream 122234 22515405 ~ 22549867 (+)
nectin4b LOC107726329,LOC107696495,LOC107671794 coding downstream 7765 22696081 ~ 22717815 (+)
si:dkeyp-68b7.12 LOC107696752,LOC107552668 coding downstream 42358 22730674 ~ 22751530 (+)
si:dkeyp-68b7.5 LOC107726324,LOC107671818,LOC107696531,LOC107552690,LOC107549807,LOC107750223 coding downstream 64437 22752753 ~ 22757673 (+)
tpgs1 tpgs1 coding downstream 82233 22770549 ~ 22773756 (+)
sf3a2 sf3a2,LOC107726326,LOC107696543,LOC107671791,LOC107750226 coding downstream 92507 22780823 ~ 22784846 (+)
G14549 NA non-coding upstream 21258 22643795 ~ 22650843 (+)
G14541 NA non-coding upstream 85851 22522411 ~ 22586250 (+)
G14542 NA non-coding upstream 93878 22577023 ~ 22578223 (+)
G14540 NA non-coding upstream 158164 22512171 ~ 22513937 (+)
G14535 NA non-coding upstream 195899 22475781 ~ 22476202 (+)
G14578 NA non-coding downstream 54111 22742427 ~ 22786013 (+)
G14553 NA non-coding downstream 87924 22776240 ~ 22777003 (+)
LOC122357472 NA non-coding downstream 98405 22786721 ~ 22802473 (+)
LOC122328317 NA non-coding downstream 124950 22813266 ~ 22829545 (+)
G14589 NA non-coding downstream 159597 22847913 ~ 22879465 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 186446 22461916 ~ 22485655 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 804702 21857212 ~ 21867399 (+)
G14471 NA other upstream 810659 21860891 ~ 21861442 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other upstream 819094 21843575 ~ 21853007 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other upstream 955811 21714683 ~ 21716290 (+)
fcer1gl LOC107671799 other downstream 2883 22691199 ~ 22695330 (+)
LOC122324535 NA other downstream 314849 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 856790 23545106 ~ 23547974 (+)
LOC122323670 NA other downstream 1247605 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 1357369 24045685 ~ 24048465 (+)

Expression


Co-expression Network