pnp5b (pnp5b,LOC107730396,LOC107574318,LOC107750205,LOC107549813,LOC107684565)


Basic Information

Item Value
gene id pnp5b
gene name pnp5b,LOC107730396,LOC107574318,LOC107750205,LOC107549813,LOC107684565
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22659064 ~ 22665912 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223664.1
ctctgacagagagagagaaagagagagagagagagagagagtgtttaaGCGGAACTTTAGTTCTATTCTTCACTCGTGGCGATGTTTCCAGACTCAAGCACAGGGTGGGCTCTGTCCAGGTACGGTTACGAGGAGTGTAAGGCCacagctgattggctgctggCTCAGGCCCCGGTGCGGCCCCTGCTGGGCGTCGTGTGCGGCTCGGGGCTCGGGGGACTGGCCGAGATGCTGAAAGATCAGACGGCGGTCAGGTACGGGGACGTCCCGGGCTTCCCGCAGAGCACCGTGGACGGTCACGCCGGGAGGCTGGTGTTCGGCACGCTCAAAGGAAAGCCGTGCGTCTGCATGCAGGGCAGGTTTCATCTCTACGAAGGACACCCCATTCAGAAGACCACGATGCCCATGCGTGTGTTTAAGCTGATGGGCGTGGAGACGGTGATCCTGACCAACGCCGCCGGAGGACTCAACCCGGACTTCACCGTCGGAGACATCATGGTCATCAAAGACCACATCAATATCCCGGGCTTCGCTGGAAACAACCCGCTGGTGGGAGAAAACGACAAGAGGTTCGGCGAGCGCTTCCCGTGTATGTCGGATGCGTACGACCGCGGTCTGCAGCGGCTGGTTCACTCGCTCGCGGCCGAGCTGGATTACTCCGGATTCATTCAGGAGGGAGTGTACAGCGCTTTAGGAGGACCGTCCTTCGAGACCGTGGCTGAATGCAGAATGCTGCGTTCTCTCGGAGCGGACGCCGTCGGCATGAGCACGGTTCACGAGGTGATTGTGGCGCGTCACTGCGGGATGAGGGTGCTGGCTCTGTCTCTGATCACCAATCAGGCGGTGATGGACTACGACAGCGAGAAGAAGGCCAATCACGAGGAGGTGCTCCAGACGGGGCAGCTGAGGGCGCAGCAGATGGAGAAGCTGGTGTCCGGCGTGGTCTCCCGCATGGAGCTGGCCGACAGACGACACTAAAACTAAACGACACGCGGCCGGCCGTTACATTCCACCGCCAACGTCTTTTAGGGAACACCTCCTCGTCAAACAGACCAGTCTCTGAGCGCTGCTCCTGCCGCCgcctttatatttattcaaacgtgctttatttaaaacgtaactaaattatacataaaatatgacCGGTCGTGaagaaaatttagttttttttattttttaattaagcaagTATTTTTGTAAAGAAGGACGTTACTGATTTCTGAGTTAAGTGATACTGTATTTATGTGAGCTATTTATGTAAAAGAGCTTCGTCGTGAAGAACGCTGGGATTTGTTACTGCGAGGTACTGAACCTATTTATGTAAAAGAGCTTAAACTATAACGTTTTAAGTTGCACTAAATGACGGAGTGTTTTATGTGTCAGTTTTAAGATCTcaattactgttttactgactTTTACCGGCACTTTTCCCAAAAACGTTTCTTTTATTGACCCGAACGTTAACGTTGCACTTCATCTTTGAGTCTTATAGTTGTTTCTAAATGATCTGCttcaatgcaataaaaaaaacgatGTTGTA
>XM_043223672.1
CTttcattctctcacacacacacacacacacactctgacagagagagagaaagagagagagagagagagagagtgtttaaGCGGAACTTTAGTTCTATTCTTCACTCGTGGCGATGTTTCCAGACTCAAGCACAGGGTACGGTTACGAGGAGTGTAAGGCCacagctgattggctgctggCTCAGGCCCCGGTGCGGCCCCTGCTGGGCGTCGTGTGCGGCTCGGGGCTCGGGGGACTGGCCGAGATGCTGAAAGATCAGACGGCGGTCAGGTACGGGGACGTCCCGGGCTTCCCGCAGAGCACCGTGGACGGTCACGCCGGGAGGCTGGTGTTCGGCACGCTCAAAGGAAAGCCGTGCGTCTGCATGCAGGGCAGGTTTCATCTCTACGAAGGACACCCCATTCAGAAGACCACGATGCCCATGCGTGTGTTTAAGCTGATGGGCGTGGAGACGGTGATCCTGACCAACGCCGCCGGAGGACTCAACCCGGACTTCACCGTCGGAGACATCATGGTCATCAAAGACCACATCAATATCCCGGGCTTCGCTGGAAACAACCCGCTGGTGGGAGAAAACGACAAGAGGTTCGGCGAGCGCTTCCCGTGTATGTCGGATGCGTACGACCGCGGTCTGCAGCGGCTGGTTCACTCGCTCGCGGCCGAGCTGGATTACTCCGGATTCATTCAGGAGGGAGTGTACAGCGCTTTAGGAGGACCGTCCTTCGAGACCGTGGCTGAATGCAGAATGCTGCGTTCTCTCGGAGCGGACGCCGTCGGCATGAGCACGGTTCACGAGGTGATTGTGGCGCGTCACTGCGGGATGAGGGTGCTGGCTCTGTCTCTGATCACCAATCAGGCGGTGATGGACTACGACAGCGAGAAGAAGGCCAATCACGAGGAGGTGCTCCAGACGGGGCAGCTGAGGGCGCAGCAGATGGAGAAGCTGGTGTCCGGCGTGGTCTCCCGCATGGAGCTGGCCGACAGACGACACTAAAACTAAACGACACGCGGCCGGCCGTTACATTCCACCGCCAACGTCTTTTAGGGAACACCTCCTCGTCAAACAGACCAGTCTCTGAGCGCTGCTCCTGCCGCCgcctttatatttattcaaacgtgctttatttaaaacgtaactaaattatacataaaatatgacCGGTCGTGaagaaaatttagttttttttattttttaattaagcaagTATTTTTGTAAAGAAGGACGTTACTGATTTCTGAGTTAAGTGATACTGTATTTATGTGAGCTATTTATGTAAAAGAGCTTCGTCGTGAAGAACGCTGGGATTTGTTACTGCGAGGTACTGAACCTATTTATGTAAAAGAGCTTAAACTATAACGTTTTAAGTTGCACTAAATGACGGAGTGTTTTATGTGTCAGTTTTAAGATCTcaattactgttttactgactTTTACCGGCACTTTTCCCAAAAACGTTTCTTTTATTGACCCGAACGTTAACGTTGCACTTCATCTTTGAGTCTTATAGTTGTTTCTAAATGATCTGCttcaatgcaataaaaaaaacgatGTTGTA
>XM_043223680.1
acacacacacacactctgacagagagagagaaagagagagagagagagagagagtgtttaaGCGGAACTTTAGTTCTATTCTTCACTCGTGGCGATGTTTCCAGACTCAAGCACAGGTGGACGGTCACGCCGGGAGGCTGGTGTTCGGCACGCTCAAAGGAAAGCCGTGCGTCTGCATGCAGGGCAGGTTTCATCTCTACGAAGGACACCCCATTCAGAAGATGTTTTTCGTGTTGTTTCGGGGCAGACCACGATGCCCATGCGTGTGTTTAAGCTGATGGGCGTGGAGACGGTGATCCTGACCAACGCCGCCGGAGGACTCAACCCGGACTTCACCGTCGGAGACATCATGGTCATCAAAGACCACATCAATATCCCGGGCTTCGCTGGAAACAACCCGCTGGTGGGAGAAAACGACAAGAGGTTCGGCGAGCGCTTCCCGTGTATGTCGGATGCGTACGACCGCGGTCTGCAGCGGCTGGTTCACTCGCTCGCGGCCGAGCTGGATTACTCCGGATTCATTCAGGAGGGAGTGTACAGCGCTTTAGGAGGACCGTCCTTCGAGACCGTGGCTGAATGCAGAATGCTGCGTTCTCTCGGAGCGGACGCCGTCGGCATGAGCACGGTTCACGAGGTGATTGTGGCGCGTCACTGCGGGATGAGGGTGCTGGCTCTGTCTCTGATCACCAATCAGGCGGTGATGGACTACGACAGCGAGAAGAAGGCCAATCACGAGGAGGTGCTCCAGACGGGGCAGCTGAGGGCGCAGCAGATGGAGAAGCTGGTGTCCGGCGTGGTCTCCCGCATGGAGCTGGCCGACAGACGACACTAAAACTAAACGACACGCGGCCGGCCGTTACATTCCACCGCCAACGTCTTTTAGGGAACACCTCCTCGTCAAACAGACCAGTCTCTGAGCGCTGCTCCTGCCGCCgcctttatatttattcaaacgtgctttatttaaaacgtaactaaattatacataaaatatgacCGGTCGTGaagaaaatttagttttttttattttttaattaagcaagTATTTTTGTAAAGAAGGACGTTACTGATTTCTGAGTTAAGTGATACTGTATTTATGTGAGCTATTTATGTAAAAGAGCTTCGTCGTGAAGAACGCTGGGATTTGTTACTGCGAGGTACTGAACCTATTTATGTAAAAGAGCTTAAACTATAACGTTTTAAGTTGCACTAAATGACGGAGTGTTTTATGTGTCAGTTTTAAGATCTcaattactgttttactgactTTTACCGGCACTTTTCCCAAAAACGTTTCTTTTATTGACCCGAACGTTAACGTTGCACTTCATCTTTGAGTCTTATAGTTGTTTCTAAATGATCTGCttcaatgcaataaaaaaaacgatGTTGTA

Function

symbol description
pnp5b Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: purine nucleoside phosphorylase-like

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG:

id description
K03783 punA, PNP; purine-nucleoside phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223664.1 False 1540 mRNA 0.51 6 22659096 22665912
XM_043223672.1 True 1557 mRNA 0.51 6 22659064 22665912
XM_043223680.1 False 1394 mRNA 0.49 5 22659083 22665912

Neighbor

gene id symbol gene type direction distance location
foxl2b LOC107574316,LOC107730743,LOC107683772,LOC107750224,LOC107549802,LOC107684570 coding upstream 18470 22638886 ~ 22640594 (+)
LOC122323627 NA coding upstream 57610 22592599 ~ 22601454 (+)
LOC122357060 NA coding upstream 87064 22562512 ~ 22572000 (+)
epb41l3b epb41l3b,epb41l3,LOC107689342,LOC107729731,LOC107750217,LOC108427206 coding upstream 109197 22515405 ~ 22549867 (+)
LOC122324242 ephb1,LOC107549839,LOC107671589,LOC108430182,LOC106599529,LOC103359190 coding upstream 332892 22134354 ~ 22326172 (+)
ncstn ncstn,LOC107552665,LOC107671788,LOC107696591,LOC107726318 coding downstream 6189 22672101 ~ 22688316 (+)
nectin4b LOC107726329,LOC107696495,LOC107671794 coding downstream 30169 22696081 ~ 22717815 (+)
si:dkeyp-68b7.12 LOC107696752,LOC107552668 coding downstream 64762 22730674 ~ 22751530 (+)
si:dkeyp-68b7.5 LOC107726324,LOC107671818,LOC107696531,LOC107552690,LOC107549807,LOC107750223 coding downstream 86841 22752753 ~ 22757673 (+)
tpgs1 tpgs1 coding downstream 104637 22770549 ~ 22773756 (+)
G14549 NA non-coding upstream 8221 22643795 ~ 22650843 (+)
G14541 NA non-coding upstream 72814 22522411 ~ 22586250 (+)
G14542 NA non-coding upstream 80841 22577023 ~ 22578223 (+)
G14540 NA non-coding upstream 145127 22512171 ~ 22513937 (+)
G14535 NA non-coding upstream 182862 22475781 ~ 22476202 (+)
G14578 NA non-coding downstream 76515 22742427 ~ 22786013 (+)
G14553 NA non-coding downstream 110328 22776240 ~ 22777003 (+)
LOC122357472 NA non-coding downstream 120809 22786721 ~ 22802473 (+)
LOC122328317 NA non-coding downstream 147354 22813266 ~ 22829545 (+)
G14589 NA non-coding downstream 182001 22847913 ~ 22879465 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 173409 22461916 ~ 22485655 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 791665 21857212 ~ 21867399 (+)
G14471 NA other upstream 797622 21860891 ~ 21861442 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other upstream 806057 21843575 ~ 21853007 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other upstream 942774 21714683 ~ 21716290 (+)
fcer1gl LOC107671799 other downstream 25287 22691199 ~ 22695330 (+)
LOC122324535 NA other downstream 337253 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 879194 23545106 ~ 23547974 (+)
LOC122323670 NA other downstream 1270009 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 1379773 24045685 ~ 24048465 (+)

Expression


Co-expression Network