ftr66 (ftr66,LOC107668987,LOC107591451,LOC107706375,LOC107659402,LOC107557692)


Basic Information

Item Value
gene id ftr66
gene name ftr66,LOC107668987,LOC107591451,LOC107706375,LOC107659402,LOC107557692
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17480704 ~ 17485854 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223790.1
AATGTAGTCATCCATAACATGATACAACATTGTTACAAATCCATTATTAAATCCTTTAACTATGCTTTATACACAATTTTTGTGACAGAAAGTCAAATCGCTGGgtagagtatatatatactatatggtTTATCTTAAACTGCAGTATTTTTAATCAGTGAAACAGATAGGCTCATTTACCTATCTGTCATCTAAATACGAAGAAGTGAAGGGTGTGGCTCAGAAACATCCGTGTAAAACTAGGTCCCActtttcattatcatttaacAAGTTTTGCTACAACAGAGAACAAAATGGAATGGCTCCTGGATTCAGAAGAGTTTTGCTGTTCGATTTGCCTGGATTTGCTGAAAGATCCAGTGGCCATTCCATGTGGGCACAGCTACTGCATGGAATGCATTAATGATTACTGGAAGAAAAATGATCATTTGGGggttttcagctgtcctcagtgCGGACAGACATTTAGCCCTAGGCCTGTTTTGAACAGAAATACCATACTGGTAGATATGGTGGACAAGCTGAAGAAACTGGAACTTCTGGGCAACTCTCAAATTTACGACAACTGCATGCCAGGTGAAATGACCTGTGATTTCTGCACAAGTATCAAACAAAAAGCTGTGAAGAgttgtttggtttgtttggcGTCTTACTGTCAAAACCACCTGCAAGCACACTACAAGTCTCCTGCCTTGAAGAAACACAAGCTGATTGAAGCCTCCGTGAACCTGCAGGAGAAGATCTGTCCTCATCACGACAAATATTTGGAGATGTATTGTCGAACTGATCAACAATGCATATGTCTTTTGTGTGTGATGGATGACCATAAAGGTCACGACACAGTACCAGCACCTGTGGAAAGTACAAAGAAAcagAAAGAACTAGGCATGACTCGACAGAAATACAAGCTAAAAATTCATGCTAAAGAGAAGGACCTACTGGAGCTCAGACAGGCTGTAGAAGCCCTGAAAAGCTCTGCACAGACTGCTACGGAAAATGGTGAACAGATCTTTACTGAGTTGATTGAGTCTATTGAAAGGAGGAGGTGTAAATTCAGAGATCTGATCAGAGATCAAGAGAAAGCTGCGGATAGCATGTTGCAGACACTGGAGCAAGAAATCACAGAGCTCAAACAAAGAGATCATGAGCTTGAGATGCTTCTGAAGTCTGAAGATCATGTTCATGTTCTTCAGAACTGTCATTCCTTCTCTTCTGGCCTTCCTGACCCAGCCTTCACAATAGCTACGCTCTCAGATTTTGGCAAGGTGAACGATGCAGTGTCTGCTCTAAAGAAGAAGGTAGAAGATGTCTTTAAAGGGGAATGGCTCAGGATCTATCAAGCAGcGAGATCAATGAAGATCCTTCATTGCACAGTGCCCAAAATTAGACCAGAGTTCCTGCACCATTCCTGCCCCCTGCAACTAAATCCTTTAACAGCCCACAAGGATCTTAGTTTGTCCAAGGGGAACAAAGAAGTGGCCGTTCGGAGCCGAGTGCAGTCCTGTCCCGACCACCCGGAGCGCTTTGATTACTGGTGCCAGGTGCTGGGTACGGAGGGCCTGACAGGCTGCAGCTACTGGGAGGTGGAATGGAGTGGGATGGGTGTAAACATTGCAGTCGCATACAAAAACATTGCCAGGAAAGGGGAAAGCAGCGAAGCTCACTTCGGTCACAATGACAAATCCTGGAGTTTGTTCTGCTGCAGGAAAGGTTACGCTTTCTGGCACAACGGGATTGTCAGTAAGATCTCAGAGCCTGGCTCGTCAAAGATAGGCATATATCTGGATCACAGGGCCGGGACACTGGCGTTTTACAGCATTGATGGCTCAATGACCCTCCTGCACAGAGTTCACACCACATTCACACAGCCGCTCTACCCTGGCTTCGAGTTTTCATGCTATGACGCCTCAGTCAAGCTGTGTCAGTTGGAGTAGGGCTAGGCCCATTTGGCATTGCTTATTAGGAAAGACTGAagatatcaaatataaaatatagaaataaaaaatacagtaatatttgtataattatagTGGCTTTGCTTCCGTTGTTATTCTAGTATCACTGAAATAGcgttttttgttaatattttgaattagattttatttcattgtatcTGCTTCATAACtttagttatatttatgttttaataactttgttgtgtgtttttatcatttttgttgttttttctattcaaataaacattgtttCAGTTTAAGTACATCAagttaaagtaatttaaaataagaaatgtgtgTTGTATGTGCATAGGCCTatatcaacatttttatatcagtttatgtttataaatatgcaaagcCACAGTTACATTGAAAACctctaataatatattgtacttCTATCTCTGATAATTTGACACAGTAAATTgctgttatttctgtctgtggAATGTCCCTTGAGGATAATATTGTGTGAATGCCTTTTACGCTTTCATTCTCTGTgagctctaaaaaaaaaaaaaaaaaaaaaaaaaaaactaccaaaacaaaacaaaaacgctgTAACAatccaaataaaatacatttttaccattATATTTGCCTGAGACAACCTCGTTCTTCACGCCCTAGAGTCTATCCTTTGGTATTTGATGACATCTAGTTTGTAACAGTACACGTACGCAAATAAATAACTTTGACAGCAAAATTAAAGAAAGAGCGACCTCTGGTGGCTAAAAGTGTTAAAAGCAGGCCTTGAGTGGAAAGCAACGATAAAACTACTACTAAACGTAACGTCAGAACTCTAGCAGTATTTCTCTGaagttttgttgttgcttttccTCTGAATCTGCAGTGCAGTATCATATGAtcactgtttaaaaatgactgtaatacattaactaatttttttttttttttttgtgtgtgttaagagTGCCAAAATAAGTGGAATACAGAAAAAGGCACTGTTCTGGATGAAGGACTTTGTGAATGCAGTTTTTCCAAGTTCTTAGGAGAGGGCACCGATAAACTGAATCGATTATGTCTAGGACAGCCGTAAGAAACTAACTTTGAATCACAT

Function

symbol description
ftr66 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223790.1 True 3039 mRNA 0.39 6 17480704 17485854

Neighbor

gene id symbol gene type direction distance location
myadmb si:dkeyp-66d1.7,LOC107706376,LOC107668989,LOC107591450,LOC107738251,LOC107659403,LOC107557715,LOC103040076 coding upstream 1764 17473538 ~ 17478940 (+)
phc3 LOC107738171,LOC107591347,LOC107557539,LOC107706383 coding upstream 137645 17333696 ~ 17343059 (+)
gpr160 LOC107738252,LOC107684395,LOC107591343,LOC107706324 coding upstream 200311 17276850 ~ 17280393 (+)
sec62 sec62,LOC107684396,LOC107738178,LOC107706392,LOC107659352 coding upstream 212625 17260811 ~ 17268079 (+)
samd7 samd7,LOC107591340,LOC107557490 coding upstream 220956 17253232 ~ 17259748 (+)
ltb4r2b LOC107668991,LOC107738160,LOC107706371,LOC107659397 coding downstream 15489 17501343 ~ 17506122 (+)
sdr39u1 sdr39u1,LOC107668982,LOC107738159,LOC107557702,LOC107659398,LOC107591428,LOC107706372,LOC107579374 coding downstream 22932 17508786 ~ 17511815 (+)
parp2 parp2,LOC107668981,LOC107738156,LOC107706370 coding downstream 32958 17518812 ~ 17524769 (+)
cbln13 NA coding downstream 50659 17536513 ~ 17537813 (+)
LOC122357951 LOC107591364,LOC107706362,LOC107558878,LOC107659385,LOC107738151,LOC107738210,LOC107591430 coding downstream 145510 17631364 ~ 17652724 (+)
G13076 NA non-coding upstream 210 17480223 ~ 17480494 (+)
G13075 NA non-coding upstream 602 17479724 ~ 17480102 (+)
G13007 insra,LOC107591352,LOC107558844,LOC107706379,LOC107738166,LOC107668948 non-coding upstream 93156 17386062 ~ 17387548 (+)
G12995 NA non-coding upstream 194874 17281260 ~ 17285830 (+)
G12977 LOC107706390 non-coding upstream 207542 17272654 ~ 17273162 (+)
G13049 LOC107738153,LOC107668935,LOC107591359 non-coding downstream 41323 17527177 ~ 17529390 (+)
LOC122357958 NA non-coding downstream 124296 17610150 ~ 17612100 (+)
G13112 cbln10,LOC107738246,LOC107591369,LOC107668921 non-coding downstream 190218 17676072 ~ 17678382 (+)
G13121 NA non-coding downstream 213735 17699589 ~ 17699825 (+)
G13101 LOC107591379,LOC107668986,LOC107704284,LOC107557939,LOC107738140,LOC103040079,LOC108438942 non-coding downstream 220142 17705996 ~ 17768737 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other upstream 111602 17362245 ~ 17369102 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other upstream 440801 17032139 ~ 17039903 (+)
LOC122361622 NA other upstream 704353 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 1024172 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 1211907 16267043 ~ 16268797 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 80987 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 121398 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 293485 17779339 ~ 17782364 (+)
G13137 NA other downstream 298325 17784179 ~ 17816764 (+)
nedd8l nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219 other downstream 384404 17870258 ~ 17871416 (+)

Expression


Co-expression Network