tnr (tnr,LOC107658355,LOC107726886,LOC107558359)


Basic Information

Item Value
gene id tnr
gene name tnr,LOC107658355,LOC107726886,LOC107558359
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16325150 ~ 16443361 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223811.1
gagaccgAGTTAGAGCGAGAGCAAGGTGCACACGTTGCTCAGCCTCCTCATTGCAGCCGCGACAGGCAGCCAGAGAGGAGCTCCAATCTAACCGGTGGCAACAATAGACTACTGAAAACACAGCTTGACCAATCAATAGACCTTTGCCAGAAACATTGTGAGAGGGAGAAAGCTCCTCAAGGACCAGGGAGGAGCAGCTAAGGTGAAGAACCAAAGGCAATTACAGCACCGGCTTCCAAAACTAGaacactATTGGCAACTTTACAGAACATCAAAAGGCGCAGATTATCCTTCTGTGTGGTGAGACAGGAAGAGCATCAGCACTGGCACTTAAGTGCCAATCAGAGGTCTATTTGTGGAATTGATGATCTCGCTCTAGTGCCTGAGTTGTGATGTGGGGGTGCACAATGGCAATACAAGGCTCAATAGTGAGCCTGGCTTTACTGTTCTTTGGGATTCAAGCTGTTCCTAACCCCACCAGCAAACTAGTGAAGACCACAAGAGTGAGGCGACAGGTTCCCGAAGGCGGGGGTCCATCTAGCAACCAGACCCAGGCCATGATTTTCAATCATGTATATAACATCAATGTACCTCTAGAGTCACTCTGTTCAGTGGACCTAGACACGGTACCAGGGCCAGGGACAAACAAAATTACAGCTGCGAGTGACAAGATGCCGACAGAGTACACAGAAGAGACAGTGGACTCGGACAGTCAGGTGACCTTCACCCATCGCATCAATATCCCAAAGCAGGCCTGTGCCTGTCCCGCGGCTGCTGCTATGGAACAGCTGGCTAACCGTGTTGAGATGCTGGAGAGGGAGGTGTCCTTGCTTCGAGCGCAGTGCAGCTCCAGCTGCTGCGGAGAGAGCTCTGTTATGGGTCGCTTGGACTTCGTCCCTCAGTGTGGCCATGGTACTTTCAGTATGGAGGTTTGCGGGTGTGTTTGCGAAGAAGGATGGATTGGCAAGAACTGCTCTGAACCCCGCTGCCCAGATGACTGCTCCGGCCAGGGCATTTGCATCGAAGGCGAGTGTGTATGCGACCGTAACTTTGGCGGTGAGAACTGCTCAGAGCCTCGATGTCCAGGTGATTGCTCTGACAGGGGGTTGTGCATTGATggcgagtgtgtttgtgaggaaGCCTTTGCTGGAGAGGACTGCTCGCTGGGAAGATGTCTGAACGACTGCTCAGATCAAGGAACCTGCGTGAACGGAACCTGCCAGTGCCGACCCGGCTTCCTGGGGGAAGACTGCTCTCTCATCTTCTGTGCTAATAACTGCAGCCAGAAAGGGGTGTGTAAGGATGGTTTCTGTGCCTGTCAAGAGGGATATACAGGAGACGACTGCGCTTCAGTGTCACCTCCTATGAATCTGCGAGTTCGGGGGGTGTCAGAGAACACCATTGATCTGGAATGGGAGGGACCTGTAATCCTGACAGACTATCTCATCACTTTCGCCCCCACAACCCCTGGAGGAGTCCAACTGGAGATCAGAGTCCCAGGAAATGTTACCAACACCACCATCAAAGGGTTGGAGCCGGGTCTGGAGTACAACATCAATGTGTATGCGGTGATCGACAACATCATAAGTGCCCCAATGAACACCTTAGTCTCCACCTATCTCTCAAATCCAGACGGTTTACTCTTCAAATCCATCATGGAGACATCTGTGGAGGTTCAGTGGCAACCCTTAGACTACTTGTTTGATGGTTGGGAAATAAGCTTCATTCCCAAGGACAATGATGGAGGGATGACAGCACAACTACCCAGTACCATCACGTCATTCCACCAAACAGGGCTGCGACCTGGGGAAGAATACACCGTCAACCTGGTGGCCTTGAAGGACCAGGGAAGGAGTCAGCCTGTCACCGCAACCGTTGTCACACtGATCGATGGGCCAACACAGCTTATTGTACGAGACATCTCAGACACGGTTGCCTTTGTGGAATGGAGCTCACCCAAGGCTAAAGTGGATCAGATTATATTACGATATGGGCTGGTAGGGGTGGACGGACCAAAGACCACCTTTCGCCTCCAGCCTACTCTGAGCCAGTACTCACTCCAAGTCCTGAGGCCTGGATCCACGTATGAAGTATTAGTCAGTGGAGTCTGGAATGGAACTGAGAGTGGAGCCATTTCCACAGAGTTTACCACAGAAATTGATGCACCAAAGAACCTGAGAGTGCTGTCGAAAACTTCCACTAGCCTGGAGCTGGAATGGGACAATAGCGAGGCAGATGTGGAAGGCTACAGAGTGGTTTACAGCACACTGGCTGGAGATCAGTATGACAAAGTCATCGTCCCACTCAACGATGGTGCCACCACCAAAACGACTCTCACTGATTTACTGCCTGGCACAGAGTATGGCATAGGAATTTCAGCAGTTCTAGGTGCCAACCAAAGCACCCCAGCAACGATGAATGCCAGAACGGGTCTGGATGTCCCCTTGGATTTGACCGTCACAGCCTCCACTGACAACACCATCACCCTGTTGTGGGGCACAGTGCAGGGGCCTATTGATCACTATAGGGTGACCTACACTTCCTCAACTGGCGTTACAACTGAGCTGATGGTGCCCAAGGACGTCAACACCACCACACTGACAAGTCTAGAGCCGGGCACAGAGTACACCATTACAGTTGCAGCACAGAGAGGCCGACAGCAGAGCACTGCAGCTACTATTGATGCCTTCACAGGGTTCCGCCCTATTACACAGCTCTTCTTCTCCGATGTCACTTCTGATTCATTGACTGTGGCATGGAGTGCACCGGCTCCGCCTGCTGACGCATTCATCTTGAACTACAGTGCTCAGGACTCTAGCGATGATTCTGAGATTGCTCTAGACGGGTCCAAAACCAGAATCACACTCACTGGTCTCCTGCCCTCCAGGCGGTACACTGTTACCCTGGTTACCATGCACGGCAACGTGACCTCAAAGCCAGTTGTAGGCTCAGTCGCAACAGGAATGGACCCTCCCAGAGATATGAGTGTATTGTACGTCACAGAGGAATCTGTAACCATATCATGGATTCAACCACTTGCACCCTTTGATTACTATAAAATGTACTCCCAATCACCAAAAGGTAGGATGGACAATGTGGTGATTGACAATGATGTCACCAACTACACCCTAACCAACCTCCATCCAGCAACAGAGTACGAGATCAAACTGAACGCAGTGAGAGGGAGCCAAGAGAGCAAGGTCATCACCACTACTGTCTTTACAGCTATGGACATGCCTATGGAGCTCACTGCATTGAATGTTACACCTCAGGGGGCTCTGCTGCGTTGGAACCCCCCTGTTTCCAGTGTTGATAACTACGTGCTAACCCTCACCCGGAACCAAGTTACAGCAGACACCTTCTTAGTGGAGGGTAACAAGCAGGAGTACCAGCTGAGTCAGCTCATCCCCAGCACTACCTACTCAGTGGCTCTTTATGCCACTAAAGGTCCTCTCACCAGTGGAACAGTCATTGCCAACTTTGTCACACCCATGGATGCTCCCCAGAACCTGACAGCTAGTGAGATTAACCATCGAAGCGCCCTCATATCCTGGCAGCCGCCCATCGCAGACATCGATAACTACATGCTGACCTACAAAGCAGCCGACGGCAGTCGAAAGGAGCTGATCTTAGATGCCGAAGACACATGGATCCGTCTCGAGGGGCTGGCGGAGACCACCGAATATACTGTGAGACTGCAAGCCGCCAGAGGATTAGAGACCAGCGCCATCGTTTCTACGTCTTTCACAACAGGAAACCGATTGTTTCCCACGCCACAGAACTGTGCACAGCACCTCCTGAACGGAGAGACGCTGAGTGGAATCTACACCATCTACATCAACAGAGACCTCAGCCAAGGTGTGCAGGTTTACTGCGACATGACCACAGACGGAGGCGGCTGGATAGTGTTCCAGCGACGTCAGAACGGTTTGACTGATTTCTCCAGGAAGTGGAGTGACTACAAGATCGGTTTTGGCAACCTGGAGGATGAATTCTGGCTCGGCTTGGACAACATTCAGAAGATTGCAGCTCAAGGTCGTTATGAGCTCCGCATTGACATGAAAGATGGCCAGGAGTCTGTATATGCCAACTATGACAGGTTTTCCATTGGAGATTCCAAGAGCCTCTACAAACTGCGGATAGGAGAGTATAACGGCACTGCAGGTGACTCTCTAAGCTACCACCAGAGCAGACCTTTCTCTACCAAGGATAAGGACAATGATATTGCAGTCACCAACTGTGCACTGTCCTACAAAGGAGCCTGGTGGTACAAAAACTGTCATCGAGCCAACCTCAACGGCAAATACGGAGAATCCAGACATAGTCAGGGTATAAACTGGTATCACTGGAAAGGCCACGAGTTTTCCATCCCTTTTGTGGAGATGAAGATGAGACCTTTCAACTACCGCAGCATCAGTGGCAAGCGGAGGAGGTCCACCCATTAATCTACCGTCCTACTAgctgtttctatttttaaatagggCGAGGAAGACAGAAGGAGAGATGTAACTTATTTAAATCTTCGAATGACAAAATCCCTTTGACGAATGTctgatgtaaaatgtaaacCTTGAGGTTCGGTGGCTTTCTATATGTGTAATGCTATTTGTTCAGTTCCAGAAGATTGAAGAATAGGTAGGGTTTGGTATTTTAAGCACGTTTACAGTATGGGGCCTGTGGAAAGAACCTCATTATTAAGTAAAGAAAAGATCATTTCTCCCTTTGAGATAAAagattttagaagaaaatgaaTGCCCGTTAAAATGAGATGCttctatttttataaatgatgagaaatacctttaaaaaagtaactgaATGATTTTTGGTCAGTTTTGATTCATGTTCATGTGACCTGTTACAGTGTTATATTTTGCGTTTACTGCACCCTGAAgccaacaatattttttttttattccaattgCACTCATATTTAAACTTACATTAACAGTTGGCCATTGTACTGTTGAAGTGTCGCAGTCGATGAAGTTGCAAATGTAGGgttttctgggaaaaaaaatgagacaaaaaaacgtattattaaagttattattattattattgaaaccTCAGAAACCAAAGAATTATTCAGTATTTGAGGTAAAGTCTAACTGatctggaaaaaagaaaaatcacatgCGTTTTAGACATAAAATATGCcccatatataattttatttgtgctatattaggattttttttattgttttttaatttcacGATTTTGGACGAGGCTGATTAGTAATACTTTtacatcaggttttttttttttttttttttttcctttttttttgttataaaccTAAAGAGCACTGACGTGTACATATGAAAAACTCATATGGAGAATTTTTACGTAGTTATGTCTCGCACTCCATGCTTTTGAGTGTTTTGTTCCTGTAGACTTGAAAGAATAATGGTGTCCATCTGTGTCTTGGTAAATCCTCTAGATTAATTGTCATTCATAGGTGAGTCAGGAGAATTGCAGTCTGTGTTTTGCACTGCAGTAGTACATGCAGAGTGAAGACCATCTGAAGGGTTCTTTTCACAGatcttctgtttctttcatGCATAGTCATTGTAAAATGGAGTTGGACAGACGCCTGCTGACAAGCAGTCAAGCTTGAGCTTTCAAGACTTGACATACACACAATAGGTCACAAAAGTAATGCAACTCCTAGAGCAACTTAGAACATAGCCTTTCttcttttaccttttttgtaCCTGACAAGaatatattattagtttaacATGGCCTCGGTGTATTTTGTACAGTGATTGAAAGGTTTGTGAAGGAGGACGACCGTGTCATATTTTTCTAACCCTTCATCATGCGATGTAACTTTTACCTCAGCAAGataataattcagatttttcctcattaatatatttgtatgctCTACACATTTCTGTAGACAAATATTCTTCAGTTCTCCGGAGTTCTGCTTCTCACAACACCTGTTTCGCATAGTCGCAAATCTCCTAATGAGCCTCTTCTGAGAGACGGCACTATGATGCCTTCAAAGAGTTTCTATGCTTTTCCTTTACTTctattttttctttccattttgaggGGTAAGATTAGAGAGTGTAGCAACAGCTGGGATGGGAACTAGAAACCAAGTAAATTCTTAATCAGCTCAAGCTAATTGcatttaacactgaaaaatacTTACATTTTGCTTTCACCAGAAGGCATCATTTTCTCCAGTTACTGTTCTGTAGAGAACATGGGTGGAAATATGCGTTCCTTCTTCTGTTTTCTAACCGTTTCCGTCAGAAAACTAATTGTTTGTGGGTTCACAGTGAAGCAGCCCTTCTGTAGTTATTTCTGAAAGAGGAATAGAGACTTTAGTGTTGTGGTGACTGAttgaaacagagagagacagcagattTTCCTTCATTATTCATTGACTCGGCATATGGTGGGGGCACTTCAAGTCTCCTTCATTCTGACATGCCTCCCATCCACCAAACCACTTATGGTTCAACATTCACCACGGTAACACACTTAAAAACACGTTCCACACAACACTTGGAACTCTAACTGTGTGTTATGAAGGCAACTATGTCATTTTTCAACtctcatatacatttatttaatttcatgatGATACTGTAAAAATTCCCTACATTTTGTACCTAAGAGGATGTTGTAGAGCAGTAAAATGTTCAACTGCTTATCCTTAACCTCTATGGCTCTTGGAAAATGTGTTTAGCATGAACACTAATGAAGCAGGTTGTGTGCAAAAGAACGGTCTTTGAGACATTTGTCCCTAACTCGCTAACCACACTGTCAGATAACCTTGGATGTTATTGTAACAGATCAAATTAGCTCtagtttaacttaaaatgtgctgtatagttccttttttaatacattttctacacattaataaaatattcaaaataaaaaaa

Function

symbol description
tnr Predicted to enable signaling receptor binding activity. Acts upstream of or within axon guidance. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in brain; diencephalon; head; optic tectum; and retinal outer plexiform layer. Orthologous to human TNR (tenascin R).

NR:

description
PREDICTED: tenascin-R

GO:

id name namespace
GO:0007411 axon guidance biological_process

KEGG:

id description
K06252 TN; tenascin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223811.1 True 6914 mRNA 0.45 25 16325150 16443361

Neighbor

gene id symbol gene type direction distance location
cop1 rfwd2,LOC107726924,LOC107678936,LOC107722073,LOC107658354 coding upstream 39592 16275070 ~ 16285558 (+)
astn1 astn1 coding upstream 100679 16031983 ~ 16224471 (+)
klhl20 klhl20,LOC106569069 coding upstream 468395 15849084 ~ 15856755 (+)
kif2c kif2c,LOC107599896,LOC107657458,LOC107720856,LOC107700992,LOC107558283 coding upstream 563396 15754575 ~ 15761754 (+)
kiss1ra LOC107657423,LOC107599909,LOC107722062,LOC107700977,LOC107559038 coding upstream 619579 15694208 ~ 15705571 (+)
mrps14 LOC107722064,LOC107563590,LOC107658361,LOC107678929,LOC107559053,LOC107726917 coding downstream 52580 16495941 ~ 16497221 (+)
LOC122355504 cacybp,LOC107722060,LOC107658360,LOC107678928,LOC107726916,LOC107559063,LOC107563589 coding downstream 54348 16497709 ~ 16499702 (+)
plk3 plk3,LOC107722069,LOC107563563,LOC107658359,LOC107726922,LOC107678927,LOC107557223 coding downstream 57691 16501052 ~ 16507898 (+)
ankrd45 ankrd45,LOC107563586,LOC107658305,LOC107722043 coding downstream 101975 16545336 ~ 16547012 (+)
rasal2 rasal2,LOC107678931 coding downstream 118023 16561384 ~ 16612466 (+)
G12530 pappa2,LOC107568983,LOC107722077,LOC107558342,LOC107658303,LOC107678935,LOC107726923 non-coding upstream 60230 16263774 ~ 16264920 (+)
LOC122359940 LOC107743936,LOC101883431 non-coding upstream 290242 16032757 ~ 16034908 (+)
G12491 NA non-coding upstream 446746 15878134 ~ 15878404 (+)
G12451 NA non-coding upstream 513757 15810893 ~ 15811393 (+)
LOC122356092 NA non-coding upstream 582352 15731819 ~ 15742798 (+)
G12607 NA non-coding downstream 247565 16690926 ~ 16693619 (+)
G12669 NA non-coding downstream 340539 16783900 ~ 16784544 (+)
G12729 LOC107678904 non-coding downstream 383669 16827030 ~ 16829326 (+)
LOC122356672 NA non-coding downstream 386747 16830108 ~ 16839463 (+)
G12730 NA non-coding downstream 387288 16830649 ~ 16831883 (+)
G12531 LOC107722077,LOC107568983 other upstream 56353 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 449386 15860179 ~ 15875764 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 1075901 15241797 ~ 15249249 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 1542173 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 1571989 14746107 ~ 14753161 (+)
LOC122323293 NA other downstream 6771 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 281253 16724614 ~ 16776351 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 588778 17032139 ~ 17039903 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 918884 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 1123480 17566841 ~ 17567916 (+)

Expression


Co-expression Network