chrng (chrng,LOC107600056,LOC107749123,LOC107660019,LOC107692884,LOC107557864)


Basic Information

Item Value
gene id chrng
gene name chrng,LOC107600056,LOC107749123,LOC107660019,LOC107692884,LOC107557864
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21676444 ~ 21681888 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223826.1
ccagGTGCTGGACAGCCTTTCTTCACTAATGCTGCTCTGAGGATATTAAACATGTATCTAATCAACTCTACAAAAACCATCTGGTTATGGAAGCTTCTATCACTTTTATTCTCAGATGCGGTCTGTAATCTAGAAGGATCTCTACACAGAGATCTAATGGTGGGATACAACAAGAACATACGGCCTATGGAAAACCTTGGTGACATCATCGATGTGAAGATCAAGATGACCCTCACAAACCTCATTTCTCTGAAGGAGAAAGAAGAGACCCTCACCACTTGTGTTTGGATTGAGATGaaATGGCATGATTATCGACTCCGCTGGGCTAACAGGACAGGGTTTGAGGTCTATGAGAACATCACACGCATGCGTCTTCCCTCTAAAGCAATCTGGCTGCCCGACATCGGCCTGGAGAACAAtgTGGACGGGCGTTTTGAGGTGGCTCTCTACACCAACGCCCTGATAGATCCTGACGGTAGCGTGGTCTGGTTGCCTCCTGCCATCTACCAAAGCTCCTGTGCAATAAAAGTCAACTATTTCCCTTTTGACTGGCAGAACTGCAGCATGGTGTTCAGGTCAGAGACGTACAATGCCAATGAAATTAAACTGATGCTGTCAGACGAAGACAACATCACCATGGAGTGGATTGAGATTGATCCAGAAGCTTTTACTGAGAATGGGGAATGGATTATTAAGCACCGCCCTGCGAAGAAGGTCTTGAACAAGCGATACAGCCCAGATGATTTGGAGTACCAGGAGATCATCTTCTTCCTCATCATCCAGAGGAAACCGCTGTTCTACATCATCAATATCATCGTGCCCTGTGTCCTCTTCTCATCCCTTGTGCTGCTCGTCTACTTCCTGCCGGCCAAAGCTGGAGGGCAGAAATGTACAATGACCATTGCGAACCTACTTGGTCAGACTGTCTTCCTGTTCCTTATTGCCAAGAAAGTGCCAGAAACTTCCCAAGCTGTTCCTCTCATCGGAAAGTATCTGATGTTTGTGATGTCTGTGACAACAATAACTGTGATGAACTGTGTAGTGGTGTTGAACGTTTCTCTGCGAACTCCAAACACACATCCCATGAGTAACACCATCAGAAAGGTCTTGTTGAACATCCTTCCCCGTCTGCTGAGGATGACGATGCAGCGCTGGACACCTGAGCAGGAGGAAggggattttaaaatgtttgcccTGGGCAACGGCACGCCGCTTCGATGCAGGAGACGAAGCTCTTTGGGATTAATAGCTAAGGCAGATGAATACATGTTCAGAACAGCACGCTCAGAGCTGATGTTCAGTCGACTGAAGGAGAGAAAGGGGATGCTGAAGAACACACTAGAGAAAATACAAAACGGTCTGGGAGGGAACACAGCGCAGGATCTGGAATTCAGTTTGGCTTCAGCGTCACCAGAAGTGCAGCAGTGTGTGTCTTCCTGTAAACACATTGCAGAAAGCGCCAAGCACCAAAATGACTTTCAAAGCGAAAATGAAGAATGGTTTCTGGTTGCCAGGGTGATTGACAGGATGTGCTTTATCGTCATGGCGCTGTTGTTTATACTGGGCACAATCGCAATCTTCCTGATGGGACATTTTAACCAGGCACCAACCCAGCCATTTCCTGGAGACCCTAAAAAGTACCTGCCTGAAATCTCACCTGGAGACATCACAGGCTGAACCCAAGTTTAAAACCAAATGGCAGACTCAGAGAAACCTCCAGCAGACGTCTGGAGGACTTTGTTGAAGATGTTCTGGAGACTAAAAGCCATCAGATTGTTCTATACTATGGCAAAGGAGCTCTCAGCACTTCAGTTTAGTAGTGCTACAGGCCATCTAAAGTGATCAAAGATCTCCAGAGAAGAGAGTTGATTGGATATGAAGCCATTTGAGACTGGCTTCGTTGAGCTTTGATGAGATGTTGATGATTATGAAGGTCATGCTATCTGCTTGTCAATTCCTTTATCAGCTTTCATTTTGTGTGGTGATTTGTTAATGCTttgctcaaaataaaaaaaactaaccttC

Function

symbol description
chrng Contributes to acetylcholine receptor activity. Acts upstream of or within cholinergic synaptic transmission. Part of acetylcholine-gated channel complex. Is expressed in musculature system. Human ortholog(s) of this gene implicated in multiple pterygium syndrome. Orthologous to human CHRNG (cholinergic receptor nicotinic gamma subunit).

NR:

description
acetylcholine receptor subunit gamma-like

GO:

id name namespace
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04818 CHRNG; nicotinic acetylcholine receptor gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223826.1 True 2025 mRNA 0.46 12 21676444 21681888

Neighbor

gene id symbol gene type direction distance location
prss56 prss8,LOC107557855,LOC107600103,LOC107749207,LOC107660469,LOC107579557,LOC107692867,LOC105418127,LOC107692866 coding upstream 2844 21652740 ~ 21673600 (+)
alg3 alg3,LOC107557882,LOC107749127,LOC107730451,LOC107660011,LOC107692886 coding upstream 38526 21632030 ~ 21637918 (+)
yeats2 yeats2,LOC107692872,LOC107721785,LOC107749094,LOC107600062,LOC107557852 coding upstream 144160 21504200 ~ 21532284 (+)
klhl24a klhl24,klhl24a,LOC107749171,LOC107600063,LOC107659963,LOC107721788 coding upstream 174834 21483779 ~ 21501610 (+)
LOC122354646 LOC107660261,LOC107749204,LOC107600105,LOC107692861,LOC107721704,LOC101885431,LOC107557850 coding upstream 195578 21477659 ~ 21480866 (+)
LOC122328123 LOC107730432,LOC107749146,LOC107600057,LOC107660295,LOC100536708 coding downstream 143 21682031 ~ 21687571 (+)
LOC122355713 LOC107578657,LOC107730436,LOC107692891,LOC107692896 coding downstream 20203 21702091 ~ 21704894 (+)
camsap2b camsap2b,LOC107749095,LOC107730450,LOC107692873,LOC107660032 coding downstream 72517 21754405 ~ 21793590 (+)
wdr47a wdr47,wdr47a,LOC107749106,LOC107730459,LOC108428282 coding downstream 112800 21794688 ~ 21809332 (+)
LOC122358999 NA coding downstream 133312 21815200 ~ 21819162 (+)
G14285 NA non-coding upstream 119046 21556844 ~ 21557398 (+)
G14212 LOC107557873,LOC107721701 non-coding upstream 305945 21365808 ~ 21370499 (+)
G14234 NA non-coding upstream 330343 21342371 ~ 21346101 (+)
G13983 kif5b,LOC108232928,LOC106522897,LOC106906931,LOC103138015,LOC106962517,LOC103479480,LOC101155960 non-coding upstream 507557 21166088 ~ 21168887 (+)
G13995 LOC107749107,LOC107659422,LOC107563825 non-coding upstream 522662 21152103 ~ 21153782 (+)
G14315 NA non-coding downstream 34883 21716771 ~ 21717992 (+)
G14316 NA non-coding downstream 38030 21719918 ~ 21720575 (+)
LOC122359002 NA non-coding downstream 129041 21810929 ~ 21812903 (+)
G14476 NA non-coding downstream 212720 21894608 ~ 21895131 (+)
G14477 NA non-coding downstream 213283 21895171 ~ 21895478 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other upstream 55347 21533245 ~ 21621097 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other upstream 193802 21481134 ~ 21482642 (+)
G14211 NA other upstream 314736 21307407 ~ 21361708 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other upstream 511622 21163942 ~ 21164822 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 1168053 20493174 ~ 20508391 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 32795 21714683 ~ 21716290 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other downstream 161687 21843575 ~ 21853007 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other downstream 175324 21857212 ~ 21867399 (+)
G14471 NA other downstream 179003 21860891 ~ 21861442 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other downstream 780028 22461916 ~ 22485655 (+)

Expression


Co-expression Network