palm1b (LOC107729325,LOC107688502,LOC107584893,LOC107674018,LOC107732516)


Basic Information

Item Value
gene id palm1b
gene name LOC107729325,LOC107688502,LOC107584893,LOC107674018,LOC107732516
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12176228 ~ 12189936 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223854.1
GAATGTGTCGTGTGCTTTGGGTTTGTGTTGACATCGTTTATACAGCCCCTCGAGTGTCCGGAGGGAGGCGTATCCAAGCGTCTCCTCTCACACTCACTCGGAGGAGGAGATGCCAGACATTGCCCTTAACACGCTCGCGGAATCACTGTCGCGCGGGAAACAAAGGCTCGGCTGCCGTGGAGTCAACAGTCGCGCGCTCCATCCTAAAGCCATGTGAGAGATCCGCTGCTGCAAAGGGACGCCAGAACGCACTGACCGTCGGGTTGAGCGCCGCTCCCCGGAAAACAGAGAGCACACGTCCCCGCCAAGAACCGTTTTTGCAACCCGAGAAAATAACCGAATTTATGCCCATCAGTAGATAGTAGTAACCCAGTCGTATTGATCGCCTGTATCGTTTACGCCTCCGAGCgggggtttgtttttttttcctgagcgGGCGCGAGAGAAACATTTGCTATCAAAAGGGAACGGTCTGACCACTGAGATGTCGGAAGCTTTGTCACAGGAAGAGAGACTTCGAGCCATTGCtgagaagagaaagagggaggctgagattgaaaacaaaagaagacaaCTTGAGGATGACCGCAGACAACTCCAGCACCTCAAGTCAAAGGCATTGAGAGAGCGGTGGCTGTTGGACGGAGCGCCATCCAGTGGAGAAGACGAGGCACAGAAACAATTACAAGAGGATGAAGCCAAGACCAAACTACTGGAGCAGACCATCCTCAGACTAGAACAGGAGATTGATGAGCTTGAGACTGGAGTGCCTTTGAATAAAGGAGAAAATGCACCTGATGGTCCAGCGAAGGCAGTTGAGAACGGCATACAGCAGCCCAGCCCGAACGCAGATCAAAATAGCAAGAAACAGATCACAGGCATCGAGGCCAAACTGCAGTGCACCAACCCCGACGTAGCCATTGAGAATGCCAGCGCAGAGCATCCCGTCACCATGGTGTTCATGGGCTACAAGAATGTAGAGGACGAGGCCGAGACCAAGAAGACGCTGGGCATAGAGGAGACAGTGAAAGCTGAATTTGTGGTCATTGAGGACGGCGAGAGCAAAGCTGGGAACGAAGGGGCCAAAGAGGACCAGGCCCCACCTAACGGCAGCACCTCCAGTCCCGACAAAGCTCAGGATGAAGCCAAGAAGGAGGAATCGAAAGAAGAAGGCAATTCGAAAGAAAAGCAGCCGTGCAAGTGCTGCACAGTCATGTGAGTGAGCAACCGCTCACCCTGAAGTTAAGACTCTGACAGAAAACTGACCCCCTGACCATAACACAACAATGAATAAGTATACCCCGTATACTTATAATTAACTTTTGTTGTCTagtatgtatttctttttttatttctattaatatttttctatatttctgtcttgacatttatatatctatatatacatatattttcattatgtaaTCTTATGAAGTCCAGTATTTTGCTTGTTGAAGAACAGAAAAATGAGGACCACGACAGATTCCGCTTTagacaaaaacacagttaaaagaacaattttgtGGCCCTCAtccttattttgttttaagaaaaataagatgAACGTCTCGATATATATGAACTAGCTATTTATCTCCcatatgcatttgtgtttttaagataTTACTTTATAACTGAGAAGAAATTACTATATTGATATTACAATGTtatgcttttaatatatattttgagccttttgttttgttttttgtttttgccaaatCATCTCAGACCACTGTGAACACTGGTACATGGAGTGTCGTCTTTGTCCACAATCATACATTCTGCATTACACCACATAGTAGGCCGATATGTTTGTAAATATGATGCAATTATTTATGACTGTTCATGCTATGGTAGAATACATGTAATcacgttttattaaaataaataattactgtattaCTGCTGTAATTACCCCAGATCCCAATTATAACCACAGCAGATATCGGTTTTAACAGTACATCACTTTTTAACCAAATAACccattttaaaaccttttcaatctttttttttttttttttttacttgaatgaTAACATTGTTAGATTCAATTGtaatcaatattacatttttgaaaatttagTAACATTGCAATGCCTCATATTACACGTAGCCCATATTATCAAAAAGCATTCTTGCAGTAtgcaaaatatatctttatatcatttgaataaaaaaaagaattgtgtgAAATTGAGGGGCTTTGATGTTGATGGGGTTGCTGTTAGTTGGTATGCCCTCAATTAAGCTAGAGTTCAACATCCGTGATTCAGTGTTCAGGCAGTTGATTCACGATGAAGAATCATCCGTTTGCGTTAATTCTAAGTAAACAGTCTGgggtcaaaaaaacatttttcacattctAAGACCATGGTTTTGTAAATGTAGTTTTGCTGTCTTTCtgatatttcaatttaatgaattatttcattttgtgtaaGAAAATATGTGTTGTGGCTATCAAATAATGTCATGAGTTATAGGTGCTTTATTGGTATGGCCAATGCCTGTTATGGTCCAAGTGTTTAAATCAGGAACaatgacaataaacaaaaaaatgtttgtttacagttA
>XM_043223860.1
AATGTGTCGTGTGCTTTGGGTTTGTGTTGACATCGTTTATACAGCCCCTCGAGTGTCCGGAGGGAGGCGTATCCAAGCGTCTCCTCTCACACTCACTCGGAGGAGGAGATGCCAGACATTGCCCTTAACACGCTCGCGGAATCACTGTCGCGCGGGAAACAAAGGCTCGGCTGCCGTGGAGTCAACAGTCGCGCGCTCCATCCTAAAGCCATGTGAGAGATCCGCTGCTGCAAAGGGACGCCAGAACGCACTGACCGTCGGGTTGAGCGCCGCTCCCCGGAAAACAGAGAGCACACGTCCCCGCCAAGAACCGTTTTTGCAACCCGAGAAAATAACCGAATTTATGCCCATCAGTAGATAGTAGTAACCCAGTCGTATTGATCGCCTGTATCGTTTACGCCTCCGAGCgggggtttgtttttttttcctgagcgGGCGCGAGAGAAACATTTGCTATCAAAAGGGAACGGTCTGACCACTGAGATGTCGGAAGCTTTGTCACAGGAAGAGAGACTTCGAGCCATTGCtgagaagagaaagagggaggctgagattgaaaacaaaagaagacaaCTTGAGGATGACCGCAGACAACTCCAGCACCTCAAGTCAAAGGCATTGAGAGAGCGGTGGCTGTTGGACGGAGCGCCATCCAGTGGAGAAGACGAGGCACAGAAACAATTACAAGAGGATGAAGCCAAGACCAAACTACTGGAGCAGACCATCCTCAGACTAGAACAGGAGATTGATGAGCTTGAGACTGGAGTGCCTTTGAATAAAGGAGAAAATGCACCTGATGGTCCAGCGAAGGTTGAGAACGGCATACAGCAGCCCAGCCCGAACGCAGATCAAAATAGCAAGAAACAGATCACAGGCATCGAGGCCAAACTGCAGTGCACCAACCCCGACGTAGCCATTGAGAATGCCAGCGCAGAGCATCCCGTCACCATGGTGTTCATGGGCTACAAGAATGTAGAGGACGAGGCCGAGACCAAGAAGACGCTGGGCATAGAGGAGACAGTGAAAGCTGAATTTGTGGTCATTGAGGACGGCGAGAGCAAAGCTGGGAACGAAGGGGCCAAAGAGGACCAGGCCCCACCTAACGGCAGCACCTCCAGTCCCGACAAAGCTCAGGATGAAGCCAAGAAGGAGGAATCGAAAGAAGAAGGCAATTCGAAAGAAAAGCAGCCGTGCAAGTGCTGCACAGTCATGTGAGTGAGCAACCGCTCACCCTGAAGTTAAGACTCTGACAGAAAACTGACCCCCTGACCATAACACAACAATGAATAAGTATACCCCGTATACTTATAATTAACTTTTGTTGTCTagtatgtatttctttttttatttctattaatatttttctatatttctgtcttgacatttatatatctatatatacatatattttcattatgtaaTCTTATGAAGTCCAGTATTTTGCTTGTTGAAGAACAGAAAAATGAGGACCACGACAGATTCCGCTTTagacaaaaacacagttaaaagaacaattttgtGGCCCTCAtccttattttgttttaagaaaaataagatgAACGTCTCGATATATATGAACTAGCTATTTATCTCCcatatgcatttgtgtttttaagataTTACTTTATAACTGAGAAGAAATTACTATATTGATATTACAATGTtatgcttttaatatatattttgagccttttgttttgttttttgtttttgccaaatCATCTCAGACCACTGTGAACACTGGTACATGGAGTGTCGTCTTTGTCCACAATCATACATTCTGCATTACACCACATAGTAGGCCGATATGTTTGTAAATATGATGCAATTATTTATGACTGTTCATGCTATGGTAGAATACATGTAATcacgttttattaaaataaataattactgtattaCTGCTGTAATTACCCCAGATCCCAATTATAACCACAGCAGATATCGGTTTTAACAGTACATCACTTTTTAACCAAATAACccattttaaaaccttttcaatctttttttttttttttttttacttgaatgaTAACATTGTTAGATTCAATTGtaatcaatattacatttttgaaaatttagTAACATTGCAATGCCTCATATTACACGTAGCCCATATTATCAAAAAGCATTCTTGCAGTAtgcaaaatatatctttatatcatttgaataaaaaaaagaattgtgtgAAATTGAGGGGCTTTGATGTTGATGGGGTTGCTGTTAGTTGGTATGCCCTCAATTAAGCTAGAGTTCAACATCCGTGATTCAGTGTTCAGGCAGTTGATTCACGATGAAGAATCATCCGTTTGCGTTAATTCTAAGTAAACAGTCTGgggtcaaaaaaacatttttcacattctAAGACCATGGTTTTGTAAATGTAGTTTTGCTGTCTTTCtgatatttcaatttaatgaattatttcattttgtgtaaGAAAATATGTGTTGTGGCTATCAAATAATGTCATGAGTTATAGGTGCTTTATTGGTATGGCCAATGCCTGTTATGGTCCAAGTGTTTAAATCAGGAACaatgacaataaacaaaaaaatgtttgtttacagttA
>XM_043223867.1
GATGTCGGAAGCTTTGTCACAGGAAGAGAGACTTCGAGCCATTGCtgagaagagaaagagggaggctgagattgaaaacaaaagaagacaaCTTGAGGATGACCGCAGACAACTCCAGCACCTCAAGAGGCCTGTCTGAATGAATCTTTCAGATGTCAACCTCGCAGAGCTCAGACGCCGCTGTCTGTGCAGTAGAAACTTCAAAGGCATTGAGAGAGCGGTGGCTGTTGGACGGAGCGCCATCCAGTGGAGAAGACGAGGCACAGAAACAATTACAAGAGGATGAAGCCAAGACCAAACTACTGGAGCAGACCATCCTCAGACTAGAACAGGAGATTGATGAGCTTGAGACTGGAGTGCCTTTGAATAAAGGAGAAAATGCACCTGATGGTCCAGCGAAGGCAGTTGAGAACGGCATACAGCAGCCCAGCCCGAACGCAGATCAAAATAGCAAGAAACAGATCACAGGCATCGAGGCCAAACTGCAGTGCACCAACCCCGACGTAGCCATTGAGAATGCCAGCGCAGAGCATCCCGTCACCATGGTGTTCATGGGCTACAAGAATGTAGAGGACGAGGCCGAGACCAAGAAGACGCTGGGCATAGAGGAGACAGTGAAAGCTGAATTTGTGGTCATTGAGGACGGCGAGAGCAAAGCTGGGAACGAAGGGGCCAAAGAGGACCAGGCCCCACCTAACGGCAGCACCTCCAGTCCCGACAAAGCTCAGGATGAAGCCAAGAAGGAGGAATCGAAAGAAGAAGGCAATTCGAAAGAAAAGCAGCCGTGCAAGTGCTGCACAGTCATGTGAGTGAGCAACCGCTCACCCTGAAGTTAAGACTCTGACAGAAAACTGACCCCCTGACCATAACACAACAATGAATAAGTATACCCCGTATACTTATAATTAACTTTTGTTGTCTagtatgtatttctttttttatttctattaatatttttctatatttctgtcttgacatttatatatctatatatacatatattttcattatgtaaTCTTATGAAGTCCAGTATTTTGCTTGTTGAAGAACAGAAAAATGAGGACCACGACAGATTCCGCTTTagacaaaaacacagttaaaagaacaattttgtGGCCCTCAtccttattttgttttaagaaaaataagatgAACGTCTCGATATATATGAACTAGCTATTTATCTCCcatatgcatttgtgtttttaagataTTACTTTATAACTGAGAAGAAATTACTATATTGATATTACAATGTtatgcttttaatatatattttgagccttttgttttgttttttgtttttgccaaatCATCTCAGACCACTGTGAACACTGGTACATGGAGTGTCGTCTTTGTCCACAATCATACATTCTGCATTACACCACATAGTAGGCCGATATGTTTGTAAATATGATGCAATTATTTATGACTGTTCATGCTATGGTAGAATACATGTAATcacgttttattaaaataaataattactgtattaCTGCTGTAATTACCCCAGATCCCAATTATAACCACAGCAGATATCGGTTTTAACAGTACATCACTTTTTAACCAAATAACccattttaaaaccttttcaatctttttttttttttttttttacttgaatgaTAACATTGTTAGATTCAATTGtaatcaatattacatttttgaaaatttagTAACATTGCAATGCCTCATATTACACGTAGCCCATATTATCAAAAAGCATTCTTGCAGTAtgcaaaatatatctttatatcatttgaataaaaaaaagaattgtgtgAAATTGAGGGGCTTTGATGTTGATGGGGTTGCTGTTAGTTGGTATGCCCTCAATTAAGCTAGAGTTCAACATCCGTGATTCAGTGTTCAGGCAGTTGATTCACGATGAAGAATCATCCGTTTGCGTTAATTCTAAGTAAACAGTCTGgggtcaaaaaaacatttttcacattctAAGACCATGGTTTTGTAAATGTAGTTTTGCTGTCTTTCtgatatttcaatttaatgaattatttcattttgtgtaaGAAAATATGTGTTGTGGCTATCAAATAATGTCATGAGTTATAGGTGCTTTATTGGTATGGCCAATGCCTGTTATGGTCCAAGTGTTTAAATCAGGAACaatgacaataaacaaaaaaatgtttgtttacagttA

Function

NR:

description
paralemmin-1 isoform X1

GO:

id name namespace
GO:0008360 regulation of cell shape biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223854.1 True 2577 mRNA 0.41 7 12176228 12189936
XM_043223860.1 False 2573 mRNA 0.41 7 12176229 12189936
XM_043223867.1 False 2167 mRNA 0.38 7 12182296 12189936

Neighbor

gene id symbol gene type direction distance location
plppr3a plppr3a,LOC107584910,LOC107729344,LOC107688501,LOC107732518,LOC107674011,LOC107602549 coding upstream 7311 12156094 ~ 12168917 (+)
grin3ba LOC107722525,LOC107586537,LOC107688545,LOC107674402,LOC107602513,LOC107732504 coding upstream 26059 12111956 ~ 12150169 (+)
slc7a14a LOC107584921,LOC107688500,LOC107722625,LOC107680258,LOC107550597,LOC107732514,LOC108442332 coding upstream 86302 12068261 ~ 12089926 (+)
eif5a2 eif5a2,LOC107584931,LOC107722594,LOC107688499,LOC107680233,LOC108442333,LOC103022137,LOC105908511 coding upstream 136753 12034994 ~ 12039475 (+)
slc2a2 slc2a2,LOC107550598,LOC107680265,LOC107722632,LOC107586013 coding upstream 143146 12025276 ~ 12033082 (+)
ptbp1a ptbp1a,LOC107602545,LOC107732511,LOC107674042,LOC107584874 coding downstream 1293 12191229 ~ 12201145 (+)
efna2a efna2a,LOC107688504,LOC107729478,LOC107584867,LOC107602547,LOC107732508,LOC107674409 coding downstream 14469 12204405 ~ 12256887 (+)
hectd3 hectd3,LOC107688506,LOC107674075 coding downstream 80951 12270887 ~ 12278067 (+)
rps8a rps8a,rps8,LOC107674081,LOC107688507,LOC107602544 coding downstream 88796 12278732 ~ 12281207 (+)
LOC122328992 NA coding downstream 89975 12279911 ~ 12280014 (+)
G11419 NA non-coding upstream 75102 12100875 ~ 12101126 (+)
G11207 LOC107688485,LOC107585026,LOC107550612,LOC107709892,LOC107722651 non-coding upstream 557365 11614241 ~ 11618863 (+)
LOC122328936 NA non-coding upstream 562662 11609251 ~ 11613566 (+)
G11191 NA non-coding upstream 719364 11456326 ~ 11456864 (+)
G11190 NA non-coding upstream 720820 11454258 ~ 11455408 (+)
G11505 NA non-coding downstream 147731 12337667 ~ 12339049 (+)
G11590 NA non-coding downstream 355417 12545353 ~ 12545592 (+)
G11593 NA non-coding downstream 424439 12614375 ~ 12614596 (+)
G11595 dsela,LOC107679326,LOC107584692,LOC107728919,LOC107714854,LOC107674195 non-coding downstream 426059 12615995 ~ 12621414 (+)
G11618 NA non-coding downstream 507150 12697086 ~ 12697294 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 238638 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 668524 11482104 ~ 11507704 (+)
rps28 NA other upstream 731657 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 835117 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 837759 11303678 ~ 11338469 (+)
LOC122358236 NA other downstream 433887 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 677993 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 1985428 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 2556171 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 2586386 14776322 ~ 14782977 (+)

Expression


Co-expression Network