pdcd10b (LOC107684411,LOC107557361,LOC105906142,LOC107706406,LOC108411198,LOC100709687)


Basic Information

Item Value
gene id pdcd10b
gene name LOC107684411,LOC107557361,LOC105906142,LOC107706406,LOC108411198,LOC100709687
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17040002 ~ 17044773 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223951.1
AGACGGAAGTCGTCAGCTTTCTCGCAGCTCGCGCAGAAAACTTCCGACTTCCGaagttgaaaacaaacaaagctacATTTTGCTAGCTAAGCGTCAAAGAAACCTTTATTACTTACCCCTCAGCTGCGGGACGTGCAGGCGAAGACGAGAGCAGTGTGCTTGAGAGAACTGAGTAAACTGTGTGGCTCGGCTGCCCATTTTTACCCGTGGTTGGCCTCCATTGAGGATGACAATGGAAGAGATGAAGAATGAAGCAGATACAAATTCAATAGTCTCTATGACATTATATGCAGTCATGTACCCAGTCTTCAATGAGTTGGAGGGGATAAACCTGTCAGCAGCACAGACGTTGCGGGCAGCATTTATCAAAGCAGAGAAAGAGAACCCGGGCCTCACTCAGGATATCATCATGAAGATACTGGAGAAGAAGAATGTGGAGATCAACTTCACGGAATCACTACTGCGCATGGCTGCAGATGACGTGGAAGAGTACATGATTGAACGACAAGAGCAGGAGTTCCAGGACCTAAACGAGAAAGCGCGAGCCCTCAAACATATCCTGAGTAAAATACCAGACGAGATCAACGACAGAGTGCGTTTCCTACAGACCATAAAAGACATCGCCAGTGCTATAAAAGAGCTGCTGGACACAGTCAACAATGTGTTTAAGAAATATCAGTATCAGAATCGCAGGgcaCTTGAACACCAAAAGAAGGAGTTTGTGAAGTACTCCAAAAGCTTCAGCGATACGCTGAAAACATACTTCAAAGACGGAAAGGCAATAAACGTCTTTATCAGTGCCAACAGGCTTATCCACCAAACCAACTTGATACTACAGACCTTCAAAACCGTGGCCTAGGAGACGGAACTGTGATGTGTGCAGGAGTGTGGAGCCAGTTATGTGTAATATACAAAGATATTTGTCTTTTCaaagtataatttataaacTTTGCCTCATTCGAAGGAACTTGAAATGAGGAGCTCAAGACATGTTAATTTTCTCTTAGCTGAATAATCATAACTTTTCACCCTTACTGACAGCttcattacttttttctttcactgtTGTTCCGATCAAACGAAAGCCAAAAGATTTTGCGCCTTAAAGTGTCATGCAACAGTCCATATACAAAGTGTAAATATTGGTATTCTTTCTTTATCATTGAGACATAAAGAATGAGaataaatgatgtatttaaCAGATATTTGGTTATAAATGTTCAATAAATAGTTTCCAAATGTTTAATA

Function

NR:

description
PREDICTED: programmed cell death protein 10-B-like

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001525 angiogenesis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component

KEGG:

id description
K18269 PDCD10; programmed cell death protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223951.1 True 1248 mRNA 0.41 8 17040002 17044773

Neighbor

gene id symbol gene type direction distance location
ptx3b LOC107591444,LOC107738195,LOC107684438,LOC107659376,LOC107559106 coding upstream 10200 17025183 ~ 17029802 (+)
klhl6 klhl6,LOC107591321,LOC107706408,LOC107684416,LOC107558769,LOC107738218 coding upstream 25650 17009566 ~ 17014352 (+)
pak2a pak2a,LOC107738196,LOC107684413,LOC107659428,LOC107706409,LOC107557297,LOC107591323 coding upstream 30775 16997089 ~ 17009227 (+)
ing5b ing5b,LOC107738258,LOC107706410,LOC107591443,LOC107557337,LOC107659430 coding upstream 43387 16994689 ~ 16996615 (+)
LOC122356618 LOC107738189,LOC107684434,LOC107591326,LOC107559148,LOC107706401,LOC107659373 coding upstream 192447 16843721 ~ 16847555 (+)
nrd1a nrdc,nrd1a,LOC107738192,LOC107684410,LOC107706405,LOC107659423,LOC105906141 coding downstream 49411 17094184 ~ 17105967 (+)
fam163aa si:dkey-193b15.8,LOC107591327,LOC107684409,LOC107738190,LOC107706402,LOC107557375,LOC107659374 coding downstream 64793 17109566 ~ 17123064 (+)
rabgap1l2 rabgap1l2,LOC107706404,LOC107659372,LOC107684408,LOC107559133,LOC107591424,LOC107738216 coding downstream 80008 17124781 ~ 17128359 (+)
gadd45bb gadd45bb,LOC107738256,LOC107591447,LOC107706329,LOC107559165,LOC107659370,LOC107684432,LOC105906135 coding downstream 100600 17145373 ~ 17147065 (+)
slc1a8b slc1a8b,LOC107591333,LOC107706395,LOC107557414,LOC107738183,LOC107659353,LOC108444332,LOC105889468 coding downstream 167103 17211876 ~ 17219198 (+)
G12782 NA non-coding upstream 61246 16950834 ~ 16978756 (+)
G12784 NA non-coding upstream 72900 16958408 ~ 16967102 (+)
G12776 NA non-coding upstream 82743 16936932 ~ 16957259 (+)
G12781 NA non-coding upstream 84125 16946874 ~ 16955877 (+)
G12773 NA non-coding upstream 88289 16929508 ~ 16951713 (+)
G12818 NA non-coding downstream 78366 17123139 ~ 17123367 (+)
G12823 map1sb,LOC107738188,LOC107659421,LOC107591330,LOC107684407,LOC107706295 non-coding downstream 88304 17133077 ~ 17134888 (+)
G12972 NA non-coding downstream 116403 17161176 ~ 17162972 (+)
G12975 NA non-coding downstream 137411 17182184 ~ 17270444 (+)
G12982 diras1b,LOC107659419,LOC107591332,LOC107557388,LOC107684404,LOC107738254,LOC108236225,LOC103373792 non-coding downstream 142344 17187117 ~ 17190607 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other upstream 99 17032139 ~ 17039903 (+)
LOC122361622 NA other upstream 263651 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 583470 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 771205 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 1164238 15860179 ~ 15875764 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 317472 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 522068 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 562479 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 734566 17779339 ~ 17782364 (+)
G13137 NA other downstream 739406 17784179 ~ 17816764 (+)

Expression


Co-expression Network