LOC122328301 (LOC107696585,LOC107552683,LOC107724989,LOC107549819,LOC107671817,LOC100151059,LOC108427150)


Basic Information

Item Value
gene id LOC122328301
gene name LOC107696585,LOC107552683,LOC107724989,LOC107549819,LOC107671817,LOC100151059,LOC108427150
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22833068 ~ 22870972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223952.1
AGacggagacagagacagagacagtgtgttctgtctctctcacacacacacacacacacacacgcgcgcgtgCGCGCGCGCTCTCTGGAACAGCATCTCTGATCGAGCGCGCGAGGaggagtgagcgtgtgtgtgtgcgcgcgcgtgtcgGCGTATTTGATGCCGGGGAGGTAAACACACACTCGGGCTCGAGGACACGTATGGACGCGTTCGTGTGACTTATGGACAGACGCGAGGAGGAGACGGCGAGCAGGAGACCGAGGAGGACGCAGCCGTCACACTCCAGACCTGGGTGTGTAGAGTGAAGTGGAGGGAGGCTCATGGCTTCATTATGGGGCCTGGGCCGGCTTCAGTGGCTGGTTCTGGTCCTGGCCCTGACGGCCGTCCAGTGCTCAGGCTGCCCTCCTCGCTGTGACTGCGCGGCGCAGCTCCGTTCCGTGTCCTGCCAGCGCAAGCGTCTCTCCGGCGTCCCGGAGGGCATCCCGACAGAGACCAGGCTGCTGGATCTGAGCCGGAACCGCCTGCGCTGGGTGGCCCCGGGAGATCTGGCTCCGTACCCGCGACTAGAGGAGCTGGATCTGAGCGAGAACCTGATCAGCACGCTGGAGCCCAACGCCTTCGCCAGCCTGCAGGCTCTACGGACGCTGAGACTCAGAGCCAACCAGCTCAAGCTCGTGCCCATGGGAGCCTTCGCACGGCTGGCCAACCTCACCACACTGGACCTGAGCGAGAACAAGATCGTCATCCTGCTCGACTACACCTTCCAAGATCTGCGCAGTCTTAAGAACCTGGAGGTGGGGGACAATGACCTGGTCTACATCTCTCACAAGGCTTTCTCAGGATTGATCGGTCTGGAAGATCTGACCATTGAGAGGTGCAACCTGACGTCCATATCGGGCCAGACTCTGTCTTACCTGCGTAACCTGGTCACCCTTCGCCTGCGACACCTCAGCATCTCAGCCCTTGAGGACCAGAACTTCCGCAAGCTGTCTGCGCTGAGAGGCCTGGAGGTGGACAGCTGGCCGTACCTGGAGTACATCTCACCGCTGAGCTTCCAGGGTCTTAATCTGTCCTGGCTCTTTATCACCAACACCAACATCAGTTCGGTGCCGTCAGCCTCCTTCAGGAACCTGGCCTACCTGACGGCCCTGAACCTTTCCTACAATCCCATCTCTACTCTCGAGTCCTGGGCCTTTCGAGACCTCATCAGACTGAAGGAGCTGCACATGGTCAGCACTAACCTGCTCACCGTGGAGCCTCACGCACTGGGAGGTCTGCGTCAGATTCGAGTCTTGAACCTGTCCAACAACGATCTGGTGACGCTGGAGGAGAGCTCCTTCCACTCGGTCAACAGCCTGGAGACGCTTCGAGTGGACGGGAACCCACTGTCCTGCGACTGTCGTCTGCTGTGGATCCTGCAGCGCAGACGCACCCTGAACTTCGACGGGAAGATGCCGGTGTGCTCCGGACCGCCGGAGGTGCAGGGATACCTGTTGAGCATGTTCACCGATTCCGCATTGTTCGACTACTTCACCTGCCAGAAGCCCAAGATCCGTAATCGGAAGCTGCAGCAGGTGACGGCTCACGAAGGCCAGCCGGTGTCGTTCCTGTGCCGAGCCGAAGGCGAGCCGACTCCGGCCATCATCTGGATCTCCCCGCAGAGACGGAGGATCACTTCCAAGAGCAACGGCAGGATCACAGTTCTCCCCGGCGGGACGCTGGAGATCCGATACGCGCAGGTGACGGACAGCGGCACGTACATCTGCATCGCCAGCAACGCGGGCGGAAACGACACCTCCGCCACGCTGACCGTCAAGGGCCAGCCGTCGGATTCGGCTCTCTTCGCCAACCGCTCGCTGTACGCGGTGGACTTCAACGACAGGCTCAACAGCACGCGCGTTTTCCTCAAGTTCACGCTGGATTTGACCACCATCCTGGTGTCCACGGCCATGGGCTGCATCACTTTCCTGGGCGTGGTGCTCTTCTGCTTCCTGCTGCTGTTCGTGTGGAGCCGCGGACGAGGACAGCGCAAGAACAACTTCACGGTGGAGTACTCCTTCAGGAAGACCGAGGGACCCACCACCACCGGCGGATCCGGAGGAACCCGCAAGTTCAACATGAAGATGATATGAAACAACGCAGCCAGGGGCCCCCTGGGAGAAGCATAAACGCCCAACGCTAACACACACGGTGCTGAATCGCAGAAATCATACATCGTGCACGCAGAAACCTGACCACCTTGCAGTGTTATTCATGTACAATTAAAATAGGATTCTATATTTATGAAAtggttttggtttttatattatgttttcattttgttttttatttttgctgcaggctttttgttttactttacttttttatattagtaataaaGAGAAagtctga

Function

NR:

description
PREDICTED: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3

GO: NA

KEGG:

id description
K23533 LINGO, LRRN6; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223952.1 True 2391 mRNA 0.58 7 22833068 22870972

Neighbor

gene id symbol gene type direction distance location
sf3a2 sf3a2,LOC107726326,LOC107696543,LOC107671791,LOC107750226 coding upstream 48222 22780823 ~ 22784846 (+)
tpgs1 tpgs1 coding upstream 59312 22770549 ~ 22773756 (+)
si:dkeyp-68b7.5 LOC107726324,LOC107671818,LOC107696531,LOC107552690,LOC107549807,LOC107750223 coding upstream 75395 22752753 ~ 22757673 (+)
si:dkeyp-68b7.12 LOC107696752,LOC107552668 coding upstream 81538 22730674 ~ 22751530 (+)
nectin4b LOC107726329,LOC107696495,LOC107671794 coding upstream 115253 22696081 ~ 22717815 (+)
pias4b NA coding downstream 55341 22926313 ~ 22937828 (+)
map2k2b map2k2b,LOC107671813,LOC107726325,LOC107696522,LOC108427153 coding downstream 67815 22938787 ~ 22946858 (+)
tcf3a LOC107671808,LOC107696481,LOC107724980,LOC107552693 coding downstream 88014 22958986 ~ 22998516 (+)
mbd3a mbd3,LOC107713415,LOC107696467,LOC107552695,LOC108427158,LOC107724987 coding downstream 134925 23005897 ~ 23016480 (+)
LOC122325295 mex3d,LOC107552694,LOC107713414,LOC107724985,LOC107696452,LOC107596262 coding downstream 147385 23018357 ~ 23025395 (+)
LOC122328317 NA non-coding upstream 3523 22813266 ~ 22829545 (+)
LOC122357472 NA non-coding upstream 30595 22786721 ~ 22802473 (+)
G14578 NA non-coding upstream 47055 22742427 ~ 22786013 (+)
G14553 NA non-coding upstream 56065 22776240 ~ 22777003 (+)
G14549 NA non-coding upstream 182225 22643795 ~ 22650843 (+)
G14605 NA non-coding downstream 155808 23026780 ~ 23028239 (+)
G14607 NA non-coding downstream 158195 23029167 ~ 23029879 (+)
G14611 NA non-coding downstream 175661 23046633 ~ 23049972 (+)
G14772 NA non-coding downstream 287126 23158098 ~ 23179131 (+)
G14778 NA non-coding downstream 308473 23179445 ~ 23179755 (+)
fcer1gl LOC107671799 other upstream 137738 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 158793 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 347413 22461916 ~ 22485655 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 965669 21857212 ~ 21867399 (+)
LOC122324535 NA other downstream 132193 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 674134 23545106 ~ 23547974 (+)
LOC122323670 NA other downstream 1064949 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 1174713 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 1188440 24059412 ~ 24062202 (+)

Expression


Co-expression Network