si:ch211-106k21.5 (si:ch211-106k21.5,LOC107688547,LOC107729472,LOC107714834,LOC107674086,LOC107602518)


Basic Information

Item Value
gene id si:ch211-106k21.5
gene name si:ch211-106k21.5,LOC107688547,LOC107729472,LOC107714834,LOC107674086,LOC107602518
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12287425 ~ 12292955 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224103.1
GacacaccagcacacacacacacacacacacacacacacacacacacactgtacagtAGAGAGCGATGGGACCGCTGCTCTAAGCGCTTTGTGTCGCGGAGATCTGAATGAATGACAGCTCCACCAACAGCTCACAATAATGACACGTGAAGGACTGTTTTTGTTACAGGTCTTTTTATGCTGGTTTTGTATTCTCCAAATGCTGCATGTGACTGAAGGACGCGCTAAGGAATGTGACTGTCCATCTGCAAGCATTTTGTCTCACTTTCCATCTAAGGTACCCAGTGGCACGTGCTGCTTGAACTACTCAGGGTCCACATTCAACCAAGTTCCCTGGGCGACTTTTTTGTCGCATTCACGACTGCAGGTATTGGACCTGAGTAACTGTAATATCAGTCACATTGATCACAGTGAGGTCGGTGATGCTGGCAGCTCACTGAGGGCGCTGTAtcttggccagaacagactgaCAGCTCTGCCAGCTGACTTCCTAGCTAAAGCTTATAGTTTGGAAGTGCTTGATCTGGAACTGAATCATCTGAAACATCTGCCCGAGCAGTTTCTGAAGAGCTCAGACAAATTGCGAACGTTGATCCTTGGATGGAACCAGCTGAGCGCTCTGCCTCATTCGACCCTTAAGAGTTCGCTAGAGCATCTTGAGCTCATCGGAAACCCCTGGGCCTGCACATGCTCGCTGTTGGAGGGCCTTCAAGGTGGTCCACACATTAACTCCAGCAGCTTTCAGGACCTCGTAGGTAACTTGACCTGTGCCTCTCCTCAGAATCTCGCAGGACGGACTGTCTGGTCTTTAGAGACAAGTGATGTGTGCCATTTGGCCAACCTGACCGCCCTCTTCATCCTGCTTCCCCTGTTCCTCCTCCTCAGTTTGGTGCTCTGCTGGTGCTGtgggaggaagaagaagaggaaagaCAGCTCATCGTTCAGCCCGACTCGCAAAAGATCCAAAAACCCCCATTGCAACGGACGGTGGCCACATGCCAAGCTGCCGACTAGGGAGTCAGCAGTGTCTGTAGACAGTGGAAAGGAGGTCGTACTGAAGAACCAGCTGATGCTTCAGCCCTCGTCCAACTTGTTGGGCAGCACTCGGGATATTTATGAGGAGGTGGAGATCAAACTGGGCTCTGTGGACTCACTGGCCCCTCCGCCTTCCACTTGCTCCACGGAAGGGACCGCGGGAAAGCAGGACCTGGACACGGTGAGTGTGAGCGAAGTGATGAAGGACTCAGCCGATCGGGAGAAGGCGTACATGACCCAGTCCACCGAATACTACAGCCTTGTTCCCGGGATTGAAATCGAGGACTCTGATCACGGAGAGTATGAGAGTGTGGACCTCTCGTGACAGTGTGGAAATTGGCGCAGTCGATACTCAGAGATGCAAGCAAGTACACTGGAGTCATGGGAAGTCTGAAGCTGAGGttacatttgttattttcttgGTGATATTTCGTGGACGAATCCAGTCGGTTCAATAAGAATCCGCAGAGGGGTTTGGCGCGACTGCGATACCGACTGCTCCTGCTGATCACAACTCTCCTCTCTGACCAGcagaaagctgcttggtttgaaagttGAAGAAAAAATAGCGCACAAAATTGAGCTGAAACGTTGCTAATGTGGCTGCACCTTCAGTAAGGATGTTTCCACCTTTTGTTGCAAATGCACAGTGAACGTTGCTGTTAAAGGAAGTCACTGCGCCGTGCGAAGCCATTACTTTTGCATGCAATGTAAATGAATTACTGTCCTGATAAAGTGTCAAATGGAGCTGTTTGCAGACTCAGTCTGTTGCCAAGATAAGCTATCATATAGCTGTCGCCTGGATATTTTCATTATGTTGAGATTTTTATATCTTCGTCCTCTACTGTCATTTAGATGGgaagttttattattgtaatattactttgtgtttcacgttcagttacagtgtttagagtcaatgtaaaatgtatttggcGTCACACACAACCATGTATATTATCGTAAAGAGGAAAAGTAAACAAGAGCAAGAGAACATTAAACAGAACCACAGTTCAGCCTCTGGTCTTTATCTCCAGTAATCAAATCTGCTCAAATTTGATGTATGATGGACTAACATTTCTCTCCTACGCTGAATTTTGGAGGGTTACTGTTTATGTAACTTTGTAAATGTTGATAACAGTGATTATTTAGTCAATATTATCTAGCCTGTTTCTACAGATGGCCTCTGTTGATGTAATCATTAGTTTGGctttgttaataattaatgcatttttagcaaGTTAAAAACTTgtataatcaaataaacagaaatagcTATACTAGTCAAATGAAGTGGCTTTTAGATAAGATCAGACTGACTTGGCAGGTAAAGTTTAACGTAAGCAGATTTCAGTGAAAGGCAGGAGAGGTTGTGTACACCATTCAGAAAACGTAACGCTTAACTTTTAACCTATAAAATGACTTTAACTGTCTTTTGGTTATTTGAcataatgctgaaattaaataaaatataagtattagaTGATACATTGTgatgttaaatgaaaatgaaaaatattgattcataaaataaaataaaataggtttAAGCTAAAgtataactaaaactataactgaaacaaaatgtaaaaatgaaagaaaattcaaaataataataaatactataacaatATCTAAATAATGTACATGCACTGTCCATGTCTATCTGTGACAAAACAAATCTTCAAGATCAGAAACAAAACGGTCAGAAAAAGAATGATGGTCAAACAACACTGAACAAAACTGATCTAGGGTGCAAACGGGTTACACTGGACTTACTGTATGAATTTATTGTGATCTATTTACTTTGTGACATCAAACAATCctcaaaatgagaaattaaatttcaatgttgtcttcaaataaatgctttttacacataa

Function

NR:

description
trophoblast glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224103.1 True 2918 mRNA 0.43 2 12287425 12292955

Neighbor

gene id symbol gene type direction distance location
best4 best4,LOC107729385,LOC107674419,LOC107714835,LOC107602543 coding downstream 1414 12282082 ~ 12286011 (-)
acadm acadm,LOC107688505,LOC107584839,LOC107674066,LOC107602542 coding downstream 16953 12267085 ~ 12270472 (-)
rabggtb rabggtb,LOC107584851,LOC107732517,LOC107576861 coding downstream 21303 12261916 ~ 12266122 (-)
cldn11a cldn11a,LOC107586547,LOC107732506,LOC107550596 coding downstream 192844 12092365 ~ 12094581 (-)
ghsra LOC107586567,LOC107722546,LOC107688542,LOC107732507,LOC107550603,LOC107680230 coding downstream 383467 11901080 ~ 11903958 (-)
LOC122328397 LOC107688509,LOC107729466,LOC107714866,LOC107674362,LOC107602512 coding upstream 393 12293348 ~ 12319104 (-)
ndc1 ndc1,LOC107674092,LOC107602511,LOC107584806,LOC107688508 coding upstream 26715 12319670 ~ 12327438 (-)
zgc:113691 zgc:113691,LOC107714832,LOC107729460,LOC107586526,LOC107674428,LOC107688550,LOC107688549 coding upstream 34837 12327792 ~ 12329094 (-)
yipf1 yipf1,LOC107688551,LOC107586505,LOC107729441,LOC107602540,LOC107714864,LOC107674435 coding upstream 36796 12329751 ~ 12334468 (-)
tmem59 tmem59,LOC107688510,LOC107584797,LOC107729271,LOC107674113,LOC107714860,LOC107602538 coding upstream 44719 12337674 ~ 12340777 (-)
G11551 LOC107657932,LOC107700454,LOC107585903,LOC105895027,LOC107549844,LOC107743876,LOC107710907,LOC107579213 non-coding downstream 6215 12279758 ~ 12281210 (-)
G11549 NA non-coding downstream 15035 12271743 ~ 12272390 (-)
G11429 NA non-coding downstream 250996 12035009 ~ 12036429 (-)
G11425 slc2a2,LOC107586013,LOC107722632,LOC107680265,LOC107550598 non-coding downstream 254345 11943133 ~ 12033080 (-)
G11565 NA non-coding upstream 46321 12339276 ~ 12359064 (-)
G11572 NA non-coding upstream 59524 12352479 ~ 12353826 (-)
G11561 NA non-coding upstream 68696 12361651 ~ 12366865 (-)
G11559 NA non-coding upstream 79617 12372572 ~ 12374335 (-)
G11568 NA non-coding upstream 81696 12374651 ~ 12439008 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 672487 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 709909 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 834222 11447089 ~ 11453203 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other downstream 842312 11440990 ~ 11445113 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 881725 11379243 ~ 11405700 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other upstream 496569 12789524 ~ 12838093 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other upstream 1022274 13315229 ~ 13470263 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other upstream 1260818 13553773 ~ 13564365 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 2286040 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 2827632 15120587 ~ 15127491 (-)

Expression


Co-expression Network