rxrga (rxrga,LOC107693746,LOC107677771,LOC107718143,LOC107589872,LOC107722630)


Basic Information

Item Value
gene id rxrga
gene name rxrga,LOC107693746,LOC107677771,LOC107718143,LOC107589872,LOC107722630
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9658386 ~ 9672517 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224115.1
CCCCAAGTGTGCGCAGCGAATCCTCAGTCAGATCGCGGACAGCAGCGGGGAGATGCTGCCGTCCAGAAAGGCGACCCAAGACACTTTACGAGAAAATCGGACAGTTCTTTCACATTCGTCCAAACATGGATAATAACGACACGTATCTGCATCTTAGTTCTTCTTTGCAGGTAACACACGGCCACCTGAGCTCTCCTCCGTCCCAGCCTCCTCTCAGCTCCATGGTGTCCCACCATCACCCCTCCATCATCAACGGTCTAGGGTCGCCGTACTCAGTCATCACTTCCTCCTCTCTGGGCTCACCTTCAGCCTCCTTGCCCACCACATCCAACATGGGCTATGGAGCACTCAACAGTCCACAGATGAACTCCATGAACAGTGTTAGCAGCTCAGAAGACATTAAACCTCCTCCAGGACTGGCAGGACTGGGCAGTTACTCCTGCGGCAGCCCGGGGTCCCTCTCCAAACACATCTGTGCCATCTGTGGAGACCGATCCTCAGGGAAACATTATGGTGTTTACAGCTGTGAAGGATGCAAGGGCTTCTTCAAGAGAACTATCCGGAAAGACCTCACGTACACGTGCCGAGACAATAAAGACTGCCAGATTGACAAACGCCAGCGTAACCGCTGCCAGTACTGCCGCTATCAGAAGTGTCTGGCCATGGGCATGAAGAGAGAAGCGGTGCAGGAAGAGAGGCAGCGGGGTCGGGAAAAGAGTGACAACGAGGTGGAGTGTAGCAGCAGCTTTAATGAAGAAATGCCAGTGGAGAAGATTTTGGACGCTGAGCTCGCAGTGGAACCCAAGACTGAGGCTTACATGGAGTCCAGCACGGGCAACTCGACAAATGACCCAGTGACCAACATCTGCCAGGCAGCAGACAAGCAGCTCTTTACTCTTGTTGAGTGGGCTAAGAGAATCCCGCACTTCTCTGACCTTCCTCTGGATGACCAGGTCATCCTGCTGCGAGCGGgttgGAACGAGCTGCTCATCGCTTCGTTCTCCCACCGTTCTGTGACGGTTAAGGACGGGATCCTCCTGGCCACCGGCCTGCACGTCCACCGCAGCAGCGCTCACAGCGCAGGGGTCGGCTCTATATTTGACAGGGTATTAACAGAGCTGGTCTCTAAGATGAAGGACATGCAGATGGACAAGACAGAGCTGGGCTGTTTAAGAGCTATCGTCCTCTTTAACCCTGATGCAAAAGGATTGTCAAACCCATCAGAGGTCGAGGCATTACGGGAAAAAGTGTACGCTTCACTGGAGGGCTACACCAAACACAATTACCCCGATCAACCCGGCAGGTTTGCGAAGCTGCTCCTCCGTCTGCCCGCTCTGCGCTCCATAGGACTGAAGTGCCTGGAGCATCTGTTCTTCTTCAAACTCATAGGAGACACACCTATAGACACTTTCCTCATGGAGATGCTGGAAGCGCCGCATCAAATCACATGACACAAGTCTTACCGCGTGTAAATACCCCCCAGCGCACACTTAACCccattataacaaaaaaagttctTATTTTGTACCAAGcacaatgtgaaaaacaaacgaACACACAAACGATTTGTATCGGTATTTTCAAAGAAAGAGACACCGTTGACGTAAATTGTAAGAGTActgtaaacctttattttgtacatAGATCTGTGATAGATGCAGaaactaaatgtgaaaatatttaattcaaagcAAATCTGTATAAACAGTCACCAGCGATGAGTTTAGAATtctgtgaaaattaaaaaaaaaaaag

Function

symbol description
rxrga Enables nuclear receptor activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including mesoderm; neural rod; pharyngeal arch; retina; and tail bud. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human RXRG (retinoid X receptor gamma).

NR:

description
retinoid X receptor alpha

GO:

id name namespace
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08526 RXRG, NR2B3; retinoid X receptor gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224115.1 True 1755 mRNA 0.50 10 9658386 9672517

Neighbor

gene id symbol gene type direction distance location
olfml2bb olfml2bb,LOC107693709,LOC107722514,LOC107589916,LOC107677754,LOC107594675 coding upstream 28191 9624718 ~ 9630195 (+)
si:ch73-14h1.2 NA coding upstream 52191 9604188 ~ 9606195 (+)
agla agl,LOC107722579 coding upstream 58150 9578055 ~ 9600236 (+)
si:ch211-153l6.6 LOC107722596,LOC107693750,LOC107594655 coding upstream 87397 9563231 ~ 9570989 (+)
palmda palmd,LOC107722597,LOC107693751,LOC107677747,LOC107589899 coding upstream 96149 9554231 ~ 9562237 (+)
prg4a LOC107594674,LOC107722510,LOC107693698,LOC107589871,LOC107677759 coding downstream 3738 9676255 ~ 9681969 (+)
odr4 c2h1orf27,LOC107693744,LOC107722540,LOC107718140,LOC107589896 coding downstream 29721 9702238 ~ 9709851 (+)
pla2g4aa pla2g4aa,LOC107722605,LOC107693742,LOC107718137,LOC107677770,LOC107594671,LOC107589895 coding downstream 59012 9731529 ~ 9745108 (+)
ivns1abpb ivns1abpb,LOC107722586,LOC107693739,LOC107718136,LOC107589867,LOC107677749 coding downstream 85662 9758179 ~ 9766326 (+)
niban1b LOC107722650,LOC107693736,LOC107564706,LOC107718132,LOC107677773,LOC107589866 coding downstream 109248 9781765 ~ 9805690 (+)
G10604 NA non-coding upstream 54543 9602366 ~ 9603843 (+)
G10581 LOC107722512,LOC107693701,LOC107594678 non-coding upstream 80980 9577171 ~ 9577406 (+)
G10571 NA non-coding upstream 85593 9486177 ~ 9572793 (+)
G10557 NA non-coding upstream 203641 9454366 ~ 9454745 (+)
G10466 NA non-coding upstream 441722 9215505 ~ 9216664 (+)
G10674 kifap3b,LOC107693735,LOC107564707,LOC107722509,LOC107718166 non-coding downstream 153098 9825615 ~ 9826220 (+)
G10738 NA non-coding downstream 316626 9989143 ~ 10010746 (+)
G10749 NA non-coding downstream 320267 9992784 ~ 9993395 (+)
G10752 NA non-coding downstream 339420 10011937 ~ 10014366 (+)
G10753 NA non-coding downstream 342042 10014559 ~ 10015822 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 486471 9162611 ~ 9171915 (+)
G10212 NA other upstream 1550609 8106865 ~ 8107777 (+)
G10108 NA other upstream 2076001 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 2358285 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 2552594 7098303 ~ 7105792 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 74053 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 239111 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 486015 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 990212 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 1038613 10711130 ~ 10718194 (+)

Expression


Co-expression Network