col11a1b (col11a1b,LOC107680048,LOC107594685,LOC107710593,LOC107564536,LOC107700498,LOC107745694)


Basic Information

Item Value
gene id col11a1b
gene name col11a1b,LOC107680048,LOC107594685,LOC107710593,LOC107564536,LOC107700498,LOC107745694
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9087694 ~ 9154434 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224154.1
ACGTCCAACCCTCCGAAAGACTTGAGCTCTTCAGGGAACAAAccggttttctttttttttcatgagagCCCGTTTACCTTCTGTCTGAGAGTCTGCTGGGCGGAGGGACTGAGGAGTTTGTTCGAGACGAAAaccaattgattttttttcgctcatggcagtgcagaaataaataaaaataatctggaTTGCGGAAAAGGAAcgaatttgaaaataaatcacagttgAGGGCACCGGTCATGGATAAGGACAAGGAAAGGTGGTCCACGAGATGGAAAACGAAAAACTGGCTCAGGAACTCCGCTTTAAGTGCAATCTTCAGTCTGACTTTTGTCCTACAGGCGACACATGTGAGAGCAGCTGAACCCGTGGATGTGCTCAAGGTCTTAGACTTTAAAAGTTCACCAGAAGGAGTGAAGAAAACACAAGGCTTCTGCACCATCCGGAGAGGATCCAAACCAGATGTGGCCTACCGAGTGGACAAACAGGCTCAACTCAGTACTCCAACCAAGCAGCTCTTCCCAGGAGGAGTGTTCCCTCAGGATTTCTCCATCCTTATGACGATCAAACCAAAGGCGGGAGTACAGTCCTTCCTTTTATCGGTATACAACGAGCAGGGCATCCAGCAGCTGGGTGTGGAGGTGGGCCGTGCTCCGGTTTTCCTTTATGAGGATCAGCATGGGAAGCCCGCTCCTGAGGATTATCCCCTTTTCCGTGCCATCAACCTTGCAGATGGAAAGTGGCACCGCGTGGCTATTAGCGTCGAAAAGAAGACCGTCACAATGATTGTGGACTGTAAGAAGAAGATCACTAAACCACTCAGCAGAAGTGACCATTCAATCATTAACACTGATGGCATCACTGTCTTCGGGACCAGAATCCTGGACGAGGAAGTTTTTGAGGGAGACATCCAGCAGCTTCTTTTGGTGGCAGACCCTCGCGCAGCCTTGGACTACTGTGAACACTACAGCCCCGACTGTGAAACCCCCCATCAAGAGACACCACAGGCCCAGGAACCCGAGGAAGAGtacAATACTGAATACACAGATTATAATGAGTTCTATGACTACACAGAAGAAGGGACTGCCACTGAAAATCCCACTGACAACATCGGTGCAGAGACTAAGCCCAGCACTGCTGACACTGGAGATTACTATACTGATCAGGACTACGGCACTGAAAACCCTTCCGTTTCCAATACAGCCACTGAGAATCCATCTCCAAAAGAGGAAATAGTAGACGACTACATTACAGGGACAGAAGAGGTTGGATTGGATCCCACCATTGCCACCAACGAGAATGTGGATATTGTGGAGTCTAAAACCACTAACGGTGCAGAAAACCAAGACTTTAAGGAATATGACATTAACGAATATGATGCAAAAGAGATAGACCCCAGCATCTATGAAGATTCATTCTATGACTACAACACTAATGGAGCTAAACCCACCGGATCAACGTACGAGAGCGAGATTGGACCGGGCCGACCTGCTGAAACAGAGGTCACGGAGAGTAATGTTGGCGGTGGCTATGGTGGTGAAAAGGGGCAAAAAGGTGAACCTGCAGTCATTGAGCCGGGGATGCTGGTAGAGGGACCCCCAGGACCACCAGGTCCCCCTGGTCTCCCCGGTACTCCAGGCATACAAGGCTCCTCGGGCCTCCACGGAGATCCTGGTGAGAGAgGCCCTCCTGGTCGTCCTGGTTTGCCAGGCGCAGATGGAGCTCCGGGGCCCTCTGGCACCATCCTCATGTTGCCGTTCCGCGCTGGTGGAGAAGCTCACAAAGGTCCGGTGGTGACGGCACAGGAAGCTCAGGCCCAAGCCATCCTCGCCCAGGCTCGGTTGACTATGAGGGGACCACCTGGCCCAATGGGATTGACAGGACGTTCCGGCCCTGTGGGTGGTCCTGGTGCACCTGGTGCTAAAGGGGAAAGTGGAGATTCTGGCCCGCAGggACCAAGAGGGCTTCAGGGCCCTACCGGACCCTCTGGAAAGGCAGGCAAGAGGGGCCGAAATGGTGCCGACGGAGCCAGAGGAATTCCTGGAGAATCGGGAGGCAAGGGGGACCGAGGGTTTGACGGACTTCCTGGTCTTCCTGGTGAGAAAGGACACAGGGGTGAGGCAGGTCCCATCGGCCTACCAGGCCCTCCAGGAGAGGATGGACCGAGGGGTGAGGATGGTGAGATTGGACAGAGAGGAATGCCAGGAGAAGGCGGTCCGAGAGGACTGCTGGGTCCCAGAGGCTCTGCTGGGACCCCTGGACAACGTGGTCTTACTGGATTGGATGGACCACCTGGCCCTAAAGGAAATATGGGTCCTCAAGGAGAGCCTGGACCTCCTGGGCAACAGGGGAACCCCGGTCCTCATGGTCTGCCTGGTCCTCAAGGCCCGATCGGTCCACCTGGAGAGAAAGGTCCCAGTGGGAAACAGGGGCTCCATGGCCTGGCTGGGGCTGACGGGCCTCCCGGTCACCCTGGGAAAGAGGGTCCTCCCGGGGAGAAAGGAGCAGCTGGCCACTCGGGTCCCCAGGGGTCCATTGGCTATCCCGGTCCCCGGGGAGTGAAGGGTGCAGAGGGCATTCGTGGCTTGAAGGGCGGCAAAGGAGAAAAGGGAGAAGATGGTTTTCCTGGGTTCAAGGGTGACATGGGCCTCAAGGGTGATAAGGGAGAGGTTGGTGTTTTGGGCCCCAGAGGAGAAGACGGTCCGGAGGGGCCGAAAGGTAAAGCAGGTCCCACCGGAGAGTCTGGGCCCATGGGTACGGCAGGAGAGAAGggaAAACTTGGTGTTCCGGGTTTGCCCGGCTACCCAGGAAGACAGGGTCCTAAAGGCTCAACTGGTTTCGTCGGCTTCCCTGGAGCCAATGGTGAGAAGGGAGGAAGGggTATTGCCGGTAAAGCAGGTCCGCGAGGACAAAGAGGACCAACGGGTCCTCGTGGTGGAAGAGGTGCCAGAGGTCCAACAGGAAAACCTGGAGCAAAGgGAACAGCAGGAAATGATGGACCAGCTGGTGGCccaggagagagaggACTCCAAGGACCTCAGGGCCCTGTTGGATTAACAGGCCCTAAAGGACCACCTGGCCCTCCTGGAAAGGATGGATTGCCCGGTCACCCTGGACAGCGTGGAGAGACTGGTTTCCAAGGAAAGACTGGACCTCCAGGACCCGGAGGTGTTGTTGGCCCACAGGGCTCTACGGGAGAAACCGGACCTGTTGGAGAGAGAGGACATCCTGGATCACCAGGGCCCCCTGGAGAGCAAGGCCTTCCCGGAGCTGCTGGCAAAGAAGGTGGAAAGGGTGATCCAGGTCCTCAGGGGGTTTCTGGGAAACCTGGCCCGGCCGGACTGAAAGGGTTCCCAGGCCAGAGGGGGATTCCTGGCACAGCGGGTCCATCTGGTCTGAAGGGAGGCGAGGGTCCACAGGGTCCACCCGGTCCTATTGGGtcaccaggagagagaggagcagcTGGACCAGGAGGACCCATTGGTCTAACAGGACGCAATGGCCCTCAAGGACCCCCGGGACCTGCTGGAGAGAAGGGTGGTCCGGGTGAGAAAGGACCTGCTGGTCCTGCCGGTCGGGATGGCATCCAAGGTCCGGTCGGACTTCCAGGCCCAGCCGGACCTCAGGGTCCACCTGGAGAGGACGGTGACAAGgGAGAAGTTGGAGAACCAGGTCAAAAGGGAAGCAAGGGTGACAAAGGCGAACATGGTCCACCAGGTTCAGTGGGTCCTCAGGGTGTAATTGGAGCTCCAGGTCCTGCTGGAAGTGACGGTGAGTCCGGGCCCAGAGGTCAGCAGGGTATGTTTGGGCAGAAAGGAGACGAGGGGCCCCGTGGTTTCCCAGGTCTTCCTGGTCCCGTTGGACTGCAGGGTTTGCCAGGACCACCAGGTGAGAAAGGAGAGAATGGAGACGTCGGCCCAATGGGTCCACCTGGTCCTCCTGGTCCCAGAGGTCCTCAAGGTCCTAGTGGAGCGGATGGTGCTCCTGGCCCTCCTGGAGGTATCGGTGCAATGGGTGGAAATGGTGAAAAGGGTGAGACCGGTGAGGCAGGTAATCCAGGACCACCAGGAGAGCCTGGTTCAGTAGGATTCAAAGGTGAGCTTGGAGAGAAAGGAGAAGCTGGTCCTCCCGGAGCTGCAGGGCCTGCTGGTGCAAGAGGACCCCCTGGAGACGACGGTCCCAAAGGAAACCCAgGTCCTATTGGCTTCCCTGGAGATCCAGGTCCTCCTGGTGAGCCCGGAGCAGGCGGACTGGATGGCCTTCCCGGAGACAAGGGAGATGATGGAGAGGCCGGTCAGCCTGGCCCATCTGGTCCATCTGGTGAAGCTGGTCCCCCAGGACCTCCTGGAAAGCGAGGTCCTGCTGGCCCAGCTGGTACAGAAGGCAGACAAGGAGAGAAAGGTGCAAAGGGTGAGGCCGGTGCTGAAGGACCAACAGGCAAAACTGGACCCGTGGGCCCCCAGGGGCCTCCTGGAAAATCTGGAGCTGAGGGCTTACGTGGCATCCCGGGGCCTGTGGGTGAGCAGGGACTTCCTGGAGCTTCTGGCCAAGACGGTCCTCCTGGACCATTGGGTCCTCCTGGCCTTCCTGGCTTGAAAGGTGACCCTGGTACTAAGGGTGAGAAGGGTCATCCAGGTCTGATTGGTCTGATCGGTCCTCCTGGTGAGTCTGGAGAGAAGGGCGACCGAGGACTGCAGGGACCTCAGGGACTTGGTGGAGGCAAGGGTGATGCTGGTCTTGTTGGTTCTCCTGGTCCCCTCGGTCCCCCAGGCCCTCCTGGTATTCCTGGAACACAAGGACAGAAAGGATCGAAAGGGTCAAGTGGTCCTGCTGGCCAAAAGGGAGAGCCTGGCCTGATTGGACCACCAGGTCCTcctGGCCCAGCTGGTGACATCATTCAGCCCCTCCCCATCCAGACAAGTAAAAAATCTCGGAGGTCACCTGACATGCAGGATGACGAGGCAGCGGGAATGATTGATTATGGTATGGAGGGAATGGAGGATGTGTTTGGATCCCTCAACACTCTCAAGCAGGACATTGAACGCATGAAGTTCCCACTGGGAACCCAGGATAACCCAGCCAGAACCTGCAAAGACCTGCAGCTCAGCCAGCCTGACTTCCCTGATGGACATTACTGGATCGATCCAAATATGGGATGCATGGGAGATGCCTTCAAAGTGTACTGTAACTTCACTGCAGGGGGAGAAACTTGCTTTTACCCTGATAAGAAATCCTCAGGGGTTAGAATATCAAACTGGCCAAAGGAGTCCCCAGGATCTTGGTTCAGTGAATTTAAGCGTGGAAAAATTTTGTCTTATGTGGATGTTGAGGAGAGCTCAATAACCTCAGTCCAGATGACGTTCCTCAAGTTGCTCAGCTCTTCTGCCCGGCAGAACTTCACATACATATGCCATCAGTCTGTGGCCTGGTATGACGCCAAGGCTGACAACTATGACAAGGCACTACGCTTCTTAGGCTCTAATGATGAGGAAATGTCCTATGACAACAACCCCTTCATCAAGACTCTTTCAGATGGCTGCTCGctaAAGCAGGGATATTCTAAATCTGTGATGGAAATTAATACCCCTCGCATCGACCAGTTGCCTATCATCGACGTCATGTTGAATGACTTTGGGGAATCCAGTCAAAGGTTTGGCTTTGAGGTAGGCCCTGTCTGCTTCCTCGGCTAGAGGACACCCCCCTCTTACCTTTATGGCAAAGGTCAAGGAGTGTGGCCAGCCGAGAGACCCCCTGCCCGTCCCCTCCTTGcgccagaaacacacacaccagcatcCGCACTGTGCAATCGGAAATGGAATATTCATCGAACGACTGAAACCTGCAATTGGAATAAACCAGAAAGAAGACATGAACTACCTGGTGGACAATGGCGCACTTtcaggagaaggaggaggaccCATTCCTTTACCATCTCACCACTCTAGAGCCTGTAGGAACCTTTtccaaacttgtttttttttctccacttgaACTCTTAAgccttattttgttttgtcccATTCCCACCTTAATCCCAGCACCATTTACTCCTGATCCCAGTCCTTCCCCCCGAGCCCCAGTCCAATTAACTCCCAATCCCGTTCCTGTATCCATTACAGATCCTCCTCCAGGTGCTGCTCAGAGCAAGACAACCACAGTGGTGTGCTCTTGTTGTAAACACCCAAACACTAAAGGTGCTATcgaaagtgcattttttttggtaaaactgtaattattattttgtacaatACTGTTCTTTAATGATTGCCTTTAAATCTTGCATGTGCATCAAAATTGATTTGATGAAATATTGGTAACTATCAAGAGTGTTTTCTTTAGAATTTTGTTGtcgttgttgctgttgttgttttcatgttcgAAAACCAACGGTGCAACAGATTTCTTCACAAGATGTCAATCAATCAAGTGTCCCTGccaactataaaataaaacaagcatttcAAACCATCcaaatttgtaattataaagtatccattttgtaaatattgacCAATTTAAGCACTTGAAGTTTCCTTTTTTGTCCACTAATATATGGGCATGTCTGACTTAGTGAAGGATTATTGGTCTTCCACtagcttttttgttgttctcaAGTGGTAGCAGTGATGCTGTGGTAATCAGTGACTCTACAATACTAAAGAAACTTGATGAAAAGTAACTTGATGTCAGATTGATATTCTTGACACTATACCTCAATCTCTTAAAAGGCGTATCCAATTCAAAGATGTTCAACCCTGTACATACAGAGCCTTGGTTAGAAAATcaagtttatatatttgaaggcagggaattttaaaataaaaaaagactatttgTTAAACGTTTGTTTGGTTATTTTGTGAGTGATATAATTAACCCTTCTATATCTAAAGCAGACACGACTATTTTGAGGTGCTTTTCATCGATATTACAGATTCTGGACAGTATTGTATTAAAATGGATAATTGTTTACTGTTTGTATGAATCGCATCTGTGTGGTTCCCTCAGTCATGCTTTTATCTTGTGCTGTATGTGCGAAAGCTTGTTGCATtcttcatttcatatttaaggTTTCTGTGCTGAAATGTGTTCAGGTTTTGTGGTTCTGTAATACTTAAGATTTGTTtcgattgttttatttttttttttcttatgcttcCGTTGTTTTTACGGTTCTGTCTGTGTCCCTGAAAACCCTTCAAATATATGACAATAGACTCAGAACTTACACATCTGTGTAACATActtataatttatgtaaaactTGGAATAAATGATCGATTACATTTCAAGTA

Function

symbol description
col11a1b Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be part of collagen type XI trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cranial cartilage; nervous system; neural crest; notochord; and otic vesicle. Human ortholog(s) of this gene implicated in Marshall syndrome; Stickler syndrome 2; autosomal dominant nonsyndromic deafness; and fibrochondrogenesis 1. Orthologous to human COL11A1 (collagen type XI alpha 1 chain).

NR:

description
PREDICTED: collagen alpha-1(XI) chain-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224154.1 True 7295 mRNA 0.52 67 9087694 9154434

Neighbor

gene id symbol gene type direction distance location
vav3b vav3b,LOC107700567,LOC107732951,LOC107677852,LOC107553269 coding upstream 158384 8890773 ~ 8929310 (+)
LOC122359011 arhgef4,LOC107700563,LOC107710620,LOC107553266,LOC107732940 coding upstream 209594 8848327 ~ 8878100 (+)
LOC122361595 LOC107710620 coding upstream 245960 8830820 ~ 8841734 (+)
amer3 LOC107710619,LOC107700565,LOC107677756,LOC107732953,LOC107553265,LOC107569737 coding upstream 425371 8651917 ~ 8662323 (+)
atr atr,LOC107677746,LOC107700496 coding upstream 436148 8630412 ~ 8651546 (+)
tecrl2b tecrl2b,LOC107564537,LOC107745691 coding downstream 19419 9173853 ~ 9180307 (+)
abcd3b abcd3b,abcd3,LOC107564533,LOC107730494,LOC107680052,LOC106590647 coding downstream 85198 9239632 ~ 9248291 (+)
si:dkey-10f21.4 tmem56,si:dkey-10f21.4,LOC107710631,LOC107730492,LOC107570488 coding downstream 100951 9255385 ~ 9277476 (+)
LOC122324815 hccsa.1,LOC107594665,LOC107710606,LOC107700523 coding downstream 123329 9277763 ~ 9281294 (+)
rwdd3 rwdd3 coding downstream 126921 9281355 ~ 9285672 (+)
G10446 amy2a,LOC107700520,LOC107594668,LOC105896008 non-coding upstream 29835 9057090 ~ 9057859 (+)
G10445 NA non-coding upstream 31449 9055723 ~ 9056245 (+)
G10433 NA non-coding upstream 146508 8939969 ~ 8941186 (+)
G10431 NA non-coding upstream 157621 8929504 ~ 8930073 (+)
G10374 NA non-coding upstream 207241 8879942 ~ 8880453 (+)
G10466 NA non-coding downstream 61071 9215505 ~ 9216664 (+)
G10557 NA non-coding downstream 299932 9454366 ~ 9454745 (+)
G10571 NA non-coding downstream 331743 9486177 ~ 9572793 (+)
G10581 LOC107722512,LOC107693701,LOC107594678 non-coding downstream 422737 9577171 ~ 9577406 (+)
G10604 NA non-coding downstream 447932 9602366 ~ 9603843 (+)
G10212 NA other upstream 979917 8106865 ~ 8107777 (+)
G10108 NA other upstream 1505309 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 1787593 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 1981902 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 2100575 6986298 ~ 6987119 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 8177 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 592136 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 757194 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 1004098 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 1508295 10662729 ~ 10665110 (+)

Expression


Co-expression Network