LOC122328481 (LOC107599284)


Basic Information

Item Value
gene id LOC122328481
gene name LOC107599284
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23995183 ~ 23997150 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224190.1
AATATTAAGTCAATAACAATTTGTGTTAgctgaatttaaataatgtctCTTCCAATAACAGAAGTCCTACATTTGAGGAGAGTGTGGACGCTCTGCTGTTGTCCCTGGACTCTGTGTCTGCTCTAAACAAGGCACTATTGATGACACACAGCCTGACTGAGAACATGGCTGCAAAGATCCTCTCCATGTGTCACACATGTCCCAGTCTCCATAACATCGGTTTTCAGGTGGAGTACAGTGAGAGATACAGTGAGCTCAATGTGTGTTCATCTATCAGCCTCACCAGAGTCACAGACTCTATCTCGACAGTTGACATCCAGTTGGCCTGTGATGATAGCATGATTGAAATATCTCcatcattcatttcattcacatcACCATGTTCAGACATCCCTAAAGTGGATGGACGGGAACTCTTTGAAACTCTTGACATCCTTAAAGGTTTACAAGAAGGGTGTGAAGAGCATGAAGAGCTTGTGGGAGATTTGATGTCCACCTTGCTCTCCGTTCCGGGTCTGCAGAAGGTCAGACTCAAGATCAGCAGTCTAACGGAGAACTGGGTGAAGAGGATTCGGTCCTTAACTGAAAGCTGTCCCAGTCTTCAGGAGATCAGATATGAATGCACAGAAAGTGGAGGCTTGTTATTAGAGGAGGTCGAGAGGATTCTTCAGAGCTCTCAGATGGATTCAGATTGTAGGATAATTATTACAGGGATGAAGCACAGTAAAGCCATGGATGGGCGGACTGAAATTATGATGGACACATCCAGATCATCATCAGCCTGTGATGAGAAAGTGAAGGTCACTTTCTGCAGGAACTCTCTCACAAGACTATTTACAATAGATGACATTGAGACAGAAGATACCAATGAGGATGAGCCtgaaatgtataaatcatagagaaaaatgaaaaaatatagtCTCTAATCTAAATTTCCAAAGCACAACATCGCTAACAATGTTCAGATCAAACATAATGCACCCGGTAATAATGTACCTTTTTGATGCTGATAATATaggatttttttgaaaacatatgATGAGATATTTCTTTATAACTCTAAATTGTCTATATAACATACACACAAGtgtcatttttgcaattttgcagTCACCCAAACACACAGAATGACAAAACAAAGACCTCTGGTATATAATCAA

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224190.1 True 1160 mRNA 0.40 6 23995183 23997150

Neighbor

gene id symbol gene type direction distance location
LOC122323657 NA coding upstream 63294 23929631 ~ 23931889 (+)
LOC122323665 NA coding upstream 69552 23920231 ~ 23925631 (+)
hes6 hes6,LOC107737402,LOC107572989,LOC107728379,LOC107569265,LOC107679391 coding upstream 208928 23783724 ~ 23786255 (+)
lpar5a LOC107737401,LOC107698486,LOC107572991,LOC107679392,LOC107728381,LOC107569267 coding upstream 220000 23772880 ~ 23775183 (+)
LOC122356725 LOC107698487,LOC107737400,LOC107679394,LOC107572992,LOC107728385,LOC107569271,LOC793909 coding upstream 224691 23765958 ~ 23770492 (+)
LOC122324443 NA coding downstream 31854 24029004 ~ 24032203 (+)
LOC122327432 LOC107549368 coding downstream 74059 24071209 ~ 24073204 (+)
LOC122324938 NA coding downstream 82006 24079156 ~ 24081504 (+)
LOC122326195 NA coding downstream 112513 24109663 ~ 24111683 (+)
LOC122327448 NA coding downstream 115627 24112777 ~ 24115107 (+)
LOC122328489 LOC107750089,LOC107757802 non-coding upstream 62 23994510 ~ 23995121 (+)
LOC122328496 NA non-coding upstream 672 23993475 ~ 23994511 (+)
LOC122328475 NA non-coding upstream 8980 23985758 ~ 23986203 (+)
G14989 NA non-coding upstream 67570 23927294 ~ 23927613 (+)
G14988 NA non-coding upstream 67933 23927040 ~ 23927250 (+)
G14996 NA non-coding downstream 12375 24009525 ~ 24023608 (+)
G15026 LOC107600260,LOC107713623,LOC107757800,LOC107676328 non-coding downstream 144090 24141240 ~ 24141921 (+)
G15029 NA non-coding downstream 148984 24146134 ~ 24147389 (+)
G15039 LOC108433105 non-coding downstream 178135 24175285 ~ 24211058 (+)
G15041 NA non-coding downstream 189474 24186624 ~ 24250684 (+)
LOC122323670 NA other upstream 56167 23935921 ~ 23939016 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other upstream 447209 23545106 ~ 23547974 (+)
LOC122324535 NA other upstream 989929 23003165 ~ 23005254 (+)
fcer1gl LOC107671799 other upstream 1299853 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 1320908 22633529 ~ 22674275 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 48535 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 62262 24059412 ~ 24062202 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other downstream 86688 24083838 ~ 24096897 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other downstream 244722 24241872 ~ 24249991 (+)
G15065 rorcb,LOC107600225,LOC107757806,LOC107698501,LOC107713654,LOC107662989 other downstream 496288 24493438 ~ 24499685 (+)

Expression


Co-expression Network