pif1 (pif1,LOC107551719,LOC107716931)


Basic Information

Item Value
gene id pif1
gene name pif1,LOC107551719,LOC107716931
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7357422 ~ 7367720 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224218.1
ATTGACCAATCTTTGCCAAGCGGAACTATTTGAAATTCGTGGCGTGCGTATCATAATGAATGTACAGCTGGTGTTTTGACTCGCTGTTTAAGCAGTGCAAGAAGAAGGTGAAATGTTGGGACACATTGAGCCAGCTGAGCTTCAGTGCACCGTGGCAGTGGAGCGcttgaatcctgcaggtcaagCCATCAAACGGCAGCTCATCCGCAAAGCCACCGTCACATTAGGGAGGAATGAGTTTCAAGAGATGGTCCTGCGGGTGCACGATAGCAAAGCTCCTCAAAATTTCATGCTGCGGAATTTCCAGCTCTTTACGCGGTTTGCTAAGGACGGTAAATGTACTGTTAAATTCATCCCAGAAAGCACACAGGTTCTGGTATCTGATTGCCCGCCGGATCGTTTGAAGATGTTTCTGAAAACCCTCAGCATCAAACATCAGGCATCCCAAGGCACGAAGCCTATGAGTGATAGGGATAAATTACGAGCTGGCCTTCCTAGAGCGTTTGAGACCCTCAGTCCTCTCCAGCTTAGAGATGTGCAGAAGGCAAACGAGATGAGAAGTAGAGTAAATGCACCAATCCAACCCAAAGGTCCTTCAGAGAGATCTGTCAATAAGGTCTTGGGCGAAAGGAAGCAAGTAAAAAGACCCAGGCCTGATTGTGACTCTAGTCCGGTTAAAGCACTCCATCCCAATAAGAAGCCCATATTGGTTCTGCCTGTGGCGCAAAAGCTCAGCAAAGAACAAATTGCCGTTCTTAATGCCGTCTTGAGTGGCAAGAATGTGTTTTTCACTGGCAGTGCAGgtacTGGAAAGTCCTTTTTGCTCAAAAGGATTATAGGCTCCCTGCCTCCAAAAAGCACATATGCAACAGCAAGCACAGGTGTTGCGGCTTGTCACATAGGAGGGACCACTCTGCACAGTTTTGCagGTATCGGTTCTGGCTCTGCTCCCCTTGAACAATGTGTTGAGCTTGCGCAGCGTCCTGGAGTGCTGCAGCACTGGACGTCTTGCAAACACCTTGTTATAGATGAGATTTCAATGGTGGAAGCAGAGTTCTTTGACAAACTGGAAGCTGTAGccagatcCATCAGAAGATCCACTGAGCCGTTTGGAGGGATTCAACTGATAGTGTGTGGAGATTTTCTTCAACTTCCACCTGTAGCAAAAGGAAAGGACAAGGCACACTTTTGTTTTCAGTCGAGAAGCTGGCGGAAGTGTATCCATATGAACATGGAGCTGACGGAGGTGCGCAGGCAAACAGACAAGGCCTTCATCTCTCTCCTCCAGGCTGTGAGAGTGGGCAGAGTCACAGAGGACGTTACTGCACAGCTACTGAGAAGCGCCTATCATAGCATCGAGAGGGATGGTATCCTAGCAACCAGGCTGTGCACACACAAGGATGATGTGGAGCTCACTAATGAGAATAAACTCAAACAGTTGCCAGGGGTCATGCGAGTGTTCGAGGCCGTGGATAGTGACCCTCTGCTGTATCAAACAATTGATGCACAGAGTCCAGTGAGTCGGCTGTTACAGCTCAAAGTGGGAGCTCAGGTCATGCTCACTAAAAACCTGGATGTCCAGAGAGGTCTAGTGAATGGGGCCAGAGGAGTAGTGGTTGACTTTCAGCCAGGCAATCAAGGTCTCCCTCGGGTGCGGTTTCTTTGCGGGGCTGTTGAAGTACTAAAGAGAGAGCGTTGGATGTTTAAAGCGTCAGGGGGGCTGTACCTGAGCCGACAACAGCTGCCACTCAAGCTGGCCTGGGCCATTTCAATCCACAAGAGTCAGGGCATGACTCTGGATTGTGTGGAGATCTCTTTGGCACGTGTGTTTGAGAGCGGCCAGGCCTATGTTGCTTTGTCACGTGCCCGGAGTCTGGAAGGACTACGTGTTATGGACTTTGATCCGCGAGTAGTGCAGGCCAACCACGACGTGCTGCTCTTTTATAAGAGACTGAGAAAAGAGAAGCTCCTCATGCAGTCCTCAATGAATGACTTTGTTGGACAGAGCAATAAGGAGAATTCCCGTTGGTGAGGTGGTGATGTGAAGCTCTCATCTTCATATGCACTGTGTGCATGAATGCATCAGGAACATGAGTCATTGTAATTCAGTTTGCACTTTTTGAGTAAATTATTCTACCCTGCATTCCAGCTGAgcgattatttatttttttatgaatattgcCTAAACCCTGCTTTATGTAAccatgtatttctttttaataaaatttctgCTTTTTATACA

Function

symbol description
pif1 Predicted to enable several functions, including 5'-3' DNA helicase activity; ATP binding activity; and DNA binding activity. Predicted to be involved in DNA duplex unwinding and DNA replication. Predicted to act upstream of or within DNA recombination; DNA repair; and telomere maintenance. Predicted to be located in mitochondrion and nucleus. Predicted to be active in replication fork. Is expressed in ectoderm; head; optic tectum; pectoral fin musculature; and proliferative region. Orthologous to human PIF1 (PIF1 5'-to-3' DNA helicase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000002 mitochondrial genome maintenance biological_process
GO:0006310 DNA recombination biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K15255 PIF1; ATP-dependent DNA helicase PIF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224218.1 True 2242 mRNA 0.48 13 7357422 7367720

Neighbor

gene id symbol gene type direction distance location
nsun4 nsun4,LOC107684939,LOC107700511,LOC107551708,LOC107577791 coding downstream 1255 7352226 ~ 7356167 (-)
gadd45aa gadd45aa,LOC107716939,LOC107700510,LOC107743369,LOC107684937,LOC107551712 coding downstream 53736 7301516 ~ 7303686 (-)
evi5a evi5,LOC107716937 coding downstream 154149 7189914 ~ 7203273 (-)
gfi1aa gfi1,gfi1aa,LOC107694374,LOC107743364,LOC107568083,LOC107716936 coding downstream 168219 7185526 ~ 7189203 (-)
glmna glmn,glmna coding downstream 180470 7170939 ~ 7176952 (-)
LOC122357527 artn,LOC107743380,LOC107684941,LOC107551717,LOC107700541,LOC107564390 coding upstream 26632 7394352 ~ 7407917 (-)
st3gal3b st3gal3b,LOC107551715,LOC107743372 coding upstream 47722 7415442 ~ 7459592 (-)
ptprfb ptprfb,LOC107710549,LOC107564386,LOC107700544 coding upstream 214362 7582082 ~ 7690575 (-)
pbx1a pbx1a,LOC107677498,LOC107732204,LOC107700547,LOC107563289,LOC104918287,LOC108272157,LOC103479586,LOC101069707 coding upstream 840931 8208651 ~ 8264576 (-)
tmem275a si:dkey-225f23.5,LOC107577942,LOC107721454,LOC107677914,LOC107553245 coding upstream 980919 8348639 ~ 8353246 (-)
G10029 rpl5,LOC107568084,LOC107694375,LOC107743362,LOC107716952 non-coding downstream 151020 7204484 ~ 7206402 (-)
G9997 NA non-coding downstream 205719 7149801 ~ 7151703 (-)
G9972 NA non-coding downstream 248130 7107227 ~ 7109292 (-)
G9971 NA non-coding downstream 250284 7106911 ~ 7107138 (-)
G9970 NA non-coding downstream 250577 7106618 ~ 7106845 (-)
G10165 NA non-coding upstream 158619 7526339 ~ 7532065 (-)
LOC122328801 NA non-coding upstream 421017 7788737 ~ 7791610 (-)
G10185 NA non-coding upstream 566681 7934401 ~ 7934625 (-)
G10194 NA non-coding upstream 702434 8070154 ~ 8070353 (-)
G10345 NA non-coding upstream 1262686 8630406 ~ 8630606 (-)
dipk1aa fam69a,fam69aa,LOC107716951,LOC107568082,LOC108436064,LOC107694372,LOC107743375,LOC108280758 other downstream 133683 7206542 ~ 7223739 (-)
lhx8a lhx8,lhx8a,LOC107693563,LOC108436043 other downstream 344208 7009583 ~ 7013214 (-)
G9926 LOC107563058,LOC107549254,LOC108267243 other downstream 369309 6986301 ~ 6988113 (-)
G9894 NA other downstream 528420 6828490 ~ 6829002 (-)
G9891 NA other downstream 615249 6741683 ~ 6742173 (-)
G10170 kdm4ab,LOC107564389,LOC107700543,LOC107551714,LOC107684932,LOC107743373 other upstream 124486 7492206 ~ 7493844 (-)
G10178 NA other upstream 416748 7784468 ~ 7785154 (-)
G10196 NA other upstream 703056 8070776 ~ 8071834 (-)
G10213 NA other upstream 739136 8106856 ~ 8107788 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other upstream 1035607 8403327 ~ 8427904 (-)

Expression


Co-expression Network