cldn18 (LOC107722530,LOC107693705,LOC107718157,LOC107586152,LOC107589887)


Basic Information

Item Value
gene id cldn18
gene name LOC107722530,LOC107693705,LOC107718157,LOC107586152,LOC107589887
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10078400 ~ 10079945 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224583.1
CAGATCCTAGACCAGAACCCAAGACAGAAGCAGAATGAGTGCCTCAGCACTACAGACCGCAGGTTTTGTATCGGGCGCCATCGGTACGGTAGGAGTTCTTGCTGCAACGGTTATGGATGTGTGGTGCACCGAAGACCAGCAGGAGAACAAGGCCACCTCCAGCTACCATTATAAGGGCCTGTGGAAGGACTGCGAGGTGTCCCAGACGGGACTTGCTGAGTGCCAGCCTCTTTACAGCTTCCTGAGCTACTCAAGAATCCTTCAGGCTATAAGAGCTCTGATGATAGTGGCAGTATTAGTCGGTGTGATTGCAGTGTTCATCGCATTCTTCTGCCTGAAGTGCCTGAATATAAGAAGCATGGATCTCCTGACCAAGGGCAAACTGGTGCTAAGTGCAGggattttatttatcattgctGgcatttttgacatttctggATCATCAGTGTATGCTGATCAAATAGTGCCTAGTTTCATGATGCAATACCCGACCCAACATAATCAAAAGCAAGGAGAGAAGGGAGGAGTAAATTGTGGGAATGGCATGGGCATGGGCATGGGCACGGGTACGGGTATGGGCATGGGCATGGGAGgaaatgatttatttgcttTCAGGTACACATTTGGTTCCGCCCTCTACGTAGCCTGGGTAGCTGGAGCTTTGTTGCTTTTGGGAGGaattttgaaatgcattgcattCTGTACAATGCAAAACAACACCGATACGAGAGATGGCTATATTTACAATGCCACAGCCCAGCGGAGTGGGGCAGATGAAGACTGTCACCTCCAGAGAGTGAGAggagaacaacaacaaatttaagcaaagaaaaaaaaaatcttgtcagTCGTA

Function

NR:

description
claudin-18-like

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224583.1 True 853 mRNA 0.48 5 10078400 10079945

Neighbor

gene id symbol gene type direction distance location
LOC122324805 LOC107695158,LOC107722506,LOC107586159,LOC107691708 coding upstream 1066 10075157 ~ 10077334 (+)
stk25b stk25b,LOC107693719,LOC107585675,LOC107722570,LOC107589848,LOC108432500,LOC108278137 coding upstream 16684 10055965 ~ 10061716 (+)
thap4 thap4,LOC107586721,LOC107693706,LOC107589912,LOC107691505 coding upstream 29294 10046848 ~ 10049106 (+)
agxtb agxtb,LOC107722583,LOC107718120,LOC107693722,LOC107691560,LOC107585700,LOC105899541,LOC103036651,LOC108432502 coding upstream 37547 10036539 ~ 10040853 (+)
myo7bb LOC107693708,LOC107722614,LOC107564725,LOC107589856,LOC107691586 coding upstream 116925 9942861 ~ 9961475 (+)
znf644a LOC107722621,LOC107693692,LOC107589847,LOC107586139 coding downstream 16464 10096409 ~ 10107424 (+)
gtf2b gtf2b,LOC107693714,LOC107585659,LOC107718116 coding downstream 34628 10114573 ~ 10119939 (+)
fam110b fam110b,LOC107585622,LOC107722620,LOC107693712,LOC107691438,LOC107589841,LOC107718111 coding downstream 88295 10168240 ~ 10198276 (+)
LOC122355329 cyp7a1,LOC107722516,LOC107693703,LOC107586715,LOC107691428,LOC107589909,LOC107718110 coding downstream 132946 10212891 ~ 10215867 (+)
rab2a rab2a coding downstream 245113 10325058 ~ 10336681 (+)
G10819 NA non-coding upstream 14586 10058532 ~ 10063814 (+)
G10753 NA non-coding upstream 62578 10014559 ~ 10015822 (+)
G10752 NA non-coding upstream 64034 10011937 ~ 10014366 (+)
G10738 NA non-coding upstream 67654 9989143 ~ 10010746 (+)
G10838 NA non-coding downstream 61397 10141342 ~ 10141971 (+)
G10883 NA non-coding downstream 129618 10209563 ~ 10209851 (+)
G10902 NA non-coding downstream 311724 10391669 ~ 10391956 (+)
G10903 NA non-coding downstream 312748 10392693 ~ 10393150 (+)
G10901 NA non-coding downstream 341992 10421937 ~ 10539990 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 161539 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 327188 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 906485 9162611 ~ 9171915 (+)
G10212 NA other upstream 1970623 8106865 ~ 8107777 (+)
G10108 NA other upstream 2496015 7504622 ~ 7582385 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 78587 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 582784 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 631185 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 1039909 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 1149815 11229760 ~ 11264234 (+)

Expression


Co-expression Network