klf6b (klf6,LOC107698482,LOC107679408,LOC107572997,LOC107724813,LOC107569266,LOC107728392)


Basic Information

Item Value
gene id klf6b
gene name klf6,LOC107698482,LOC107679408,LOC107572997,LOC107724813,LOC107569266,LOC107728392
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23698257 ~ 23702264 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224637.1
TCGTCCGCTGGTGACGTCACTCAACGTGTTTCGCTTGTTTTGAAACTTGGAAAGTTTGCAGCGCTTCTGTGCAGCCGAGCGTCCGCTAAAGACAAACAAACGGCCGCCTTACCTCCGCGCATGAAGACACGGCGGGAAAGCGCCTTCTCCAGGACCTTCTTCCAGCTGGGTTTGACAGGTCTGCGCGTGGGAGGAATATGGATGTTATTCCCATGTGTAGTATTTTCCAGGAGCTGCAGAGTGTCCTTGACACGGGATACCTTTCCGCATTACCGTCTCTAGAGGAGTACTGGCAACAGACCTGTCTGGAGCTTGAACGCTATCTGCAGAATGAGCCCTACGTCTCCGCAGCTGATCTGAGATCAGTATGCGAGTCTGACGATCTCTGGAATCAGTTTCTGCGCTGTTGTGGGACCGAACCGAACTCATCCTCTCCGGGAGCTTCCGTCCCTATACAGGACGGGACCGCTGTGGCTTCCGATGCGTCATTCGGCAGCTGCAAGAAGATCATGGAGTCTGCCGATGTGCTCGCAGGCCCGCTGGATCACAGCGTGTCTGAGCGGgagcactcacacacacccccGACGCCGCCCTCCTCGCCCTCACTCCCTCTGATGGGGGTTAAAGAAGACGCAGAAGGGGCGAGAGGGGATGAGGGGTCACCTGAAGGACGAAGGAGAGCTCATCGGTGCTACTTCGACGGCTGCAGGAAGGTGTACACCAAGAGCTCTCATCTGAAAGCACACCAGCGCACACACACCGGTGAGAAGCCGTACAGGTGTTCATGGGAGGGCTGTGAGTGGCGCTTCGCTCGAAGTGATGAACTGACGAGGCACTTCAGAAAACACACCGGAGCCAAACCATTCAAATGCAGCCACTgcgacaggtgTTTCTCTCGTTCTGATCATCTGGCCTTGCACATGAAGCGACACATCTGAACGCAAACCCCCGAAGGCCTGCACAGAATCCCAAAGACCTGCCACAGCTGGTTTTGTATATTCGCCGAATGTCAGTGTTGCAGATTTTGCACCTTCTTGCTAAAAATATGGTTTCACCACATGTAATAgcgtttttttttgccatgctGGTGACATTTGACTTGTTCGGTTCAAGTCTTCACAAAGTTACAAAGGCAATGAAAATGCAGAAACTCTGGTACTAAATGTAAGTTCGCATATTTGCAGGCTTTAGAAATTACAAtgaatatgtatgtaaaaatcaaatcaaatcaaaaaaaaaatctctcggCTTTATTGCACAGCTAACATGTTTATATACACGGAGCAGATGTGTCCATGTTTATAATGTAgctttataaaaacacacaatataagCTAAGcgtttattgctttttattacgctctcaaattaaaaaaataataacttttgtGAATGTGCTAATATGTACCTATAATGTACTAATATGTTGCATTTAGGAGTGAATAAGGTAATAAATGACCTGCTTCATTTAGCATTTACAGGTACATTAGTCATACCGATATTACTTTTAACCAATAAATTTAGTGCCTTAAAATGGTTCTCTAAGAGTCAATTATGAGCTATTCATCAAGAgatcaaatactgtatattttgtgtCAGAAGGACTGGAATGACTGAACTGTTATTGAATAATTATCAGGAGCTGGGTTTGCTACTGTGTAGTATGCtataattttgaatttgaaaaatgcATCAGGATATTTCACTGGTTTTCCGAGCGCAGACTGACATCGTGTTGGCTCAGATAAAGCGCTAGCATTTGTTGTCCAGATGTTTAAAGTCCTGAAGACGTTAGAGAGACGAGGATGTTCACTCAGGGACTGATCATATGAAAGCTTTTAAAGTGTAACTGGAATTTGCAGTATCTTTGGgggaattttaaaatgcactccAATATTATCACtttatgtgcatgcatataaagatttttttcaatgaGGTGAACTGTACAATGTTACATGAATTTTTTCAAGAaccaaaatctaaatatttcgTTTTACTTGTACGTCACAATCATTTGTAAGCTTTCAAATCGTTTTGTCTAAAGAGACTAATGCAAatttttgttgtactttttttttttttattaaaattggtactttttgtttgtgttcttttatttttgtagaaaagCTGATCTTTATGTAAAAGCAACGGTatgttgtaaaaatgtaattatctttgtgaatgcattttataccacaaaaataaatgat

Function

symbol description
klf6 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in cytosol; fibrillar center; and nucleoplasm. Implicated in prostate cancer.

NR:

description
PREDICTED: Krueppel-like factor 6

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224637.1 True 2216 mRNA 0.43 4 23698257 23702264

Neighbor

gene id symbol gene type direction distance location
LOC122354999 NA coding upstream 60827 23634222 ~ 23637430 (+)
LOC122354760 NA coding upstream 67884 23625007 ~ 23630373 (+)
mbnl1 mbnl1,LOC107724811,LOC107573627,LOC107745615,LOC107679403,LOC107567699 coding upstream 73391 23563764 ~ 23624866 (+)
scg2b LOC107552496,LOC107552495,LOC107660152,LOC107738796 coding upstream 164900 23530770 ~ 23533357 (+)
wu:fb63a08 LOC107749217,LOC107572082,LOC107660374 coding upstream 255556 23424694 ~ 23442701 (+)
pitrm1 pitrm1,LOC107698483,LOC107679400,LOC107724807 coding downstream 1237 23703501 ~ 23715237 (+)
trnaw-cca_1 NA coding downstream 34787 23737051 ~ 23737122 (+)
LOC122356725 LOC107698487,LOC107737400,LOC107679394,LOC107572992,LOC107728385,LOC107569271,LOC793909 coding downstream 63694 23765958 ~ 23770492 (+)
lpar5a LOC107737401,LOC107698486,LOC107572991,LOC107679392,LOC107728381,LOC107569267 coding downstream 70616 23772880 ~ 23775183 (+)
hes6 hes6,LOC107737402,LOC107572989,LOC107728379,LOC107569265,LOC107679391 coding downstream 81460 23783724 ~ 23786255 (+)
G14841 NA non-coding upstream 6397 23690422 ~ 23691860 (+)
G14850 LOC107724821,LOC107698475,LOC107573003,LOC107709797,LOC107680183,LOC107577770 non-coding upstream 14859 23668563 ~ 23683398 (+)
LOC122355031 NA non-coding upstream 54707 23642463 ~ 23643550 (+)
G14837 cul3a,LOC107679386,LOC102194569,LOC105907048,LOC107567698,LOC107724810 non-coding upstream 135905 23558249 ~ 23562352 (+)
G14832 LOC101170875,LOC106580681,LOC106612448 non-coding upstream 145024 23550605 ~ 23553233 (+)
G14859 NA non-coding downstream 17378 23719642 ~ 23762825 (+)
G14860 NA non-coding downstream 20002 23722266 ~ 23722747 (+)
G14872 NA non-coding downstream 42607 23744871 ~ 23746553 (+)
G14889 NA non-coding downstream 74839 23777103 ~ 23780120 (+)
G14863 LOC107728390,LOC107572994,LOC107737392,LOC107569272 non-coding downstream 88998 23791262 ~ 23795903 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other upstream 150283 23545106 ~ 23547974 (+)
LOC122324535 NA other upstream 693003 23003165 ~ 23005254 (+)
fcer1gl LOC107671799 other upstream 1002927 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 1023982 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 1212602 22461916 ~ 22485655 (+)
LOC122323670 NA other downstream 233657 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 343421 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 357148 24059412 ~ 24062202 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other downstream 381574 24083838 ~ 24096897 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other downstream 539608 24241872 ~ 24249991 (+)

Expression


Co-expression Network