ptx3b (LOC107591444,LOC107738195,LOC107684438,LOC107659376,LOC107559106)


Basic Information

Item Value
gene id ptx3b
gene name LOC107591444,LOC107738195,LOC107684438,LOC107659376,LOC107559106
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17025183 ~ 17029802 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224672.1
TACATCACATATGCTGCCCACCTCCAACAAAGTATTACTCACGCTGTGACAGCCCTGctctgtgttgtgtttaaaAGAGCTTGCTCAGCCTCATGTACGTTCAGTGGGCTGACACATGAGGGACGGCGACTGTGTAACAACACAGGAACAACCACAAGGCATCTTAGTGGCTGTGGAACATCTGATTTACTTCAAAATAATCTGATTACATGCTGGGGCAGACTAACATACACACCAGCATTAACATCAGAATGTATGTGCCCGGGGCCATGCTGGCCCTCTGCCTGCCCTGCTTTTTGAGTGGGAATGTGTTTGGTTATGAATATGGAGAGGATTACTCTGATTCCTACTATAATGAAATCTCCAATGGTGAACGTCTGCAAAcaggagctacACAAATTCCCTGTCCGCCTCAGGACCTCTCACGCTGGGACAAACTTTTCATCATGTTGGAGGACTCTCAAATGAAGCACAACATGCTTATGCAGCAGAATGAAGACATGGTAAAGGCAGAGATGGAATCTGTACGGAAGGAGCTCCATAAGcttaacaacaacaaagcatGCGTCCAAGCCTCAGAAAACACCTGTAAATGTATAAGTGAACAGATGAACCGAAATCTGAACCAAGCCATGGAGCAGCTCAGAGAAGCAGCAGATACGTATCAAGCCCAAAACAACGAAACACTGCAGCAGCTCATTCAGTTCAGCAGGAACCAGGCCACCCGTCTCACCAAACTGGATCGCAGCTCACTGCTGGGGGCCGGTCTGGGGCAAGTGGCCATGAAGTCCTTCTCCACTTATCCAAAAGAACAAGAAGCAAGCAATGCAGATGCAGGGAAGCTGGAGAGAGCACTTATGGCTACTGTTGCGGATCTCCAAAGGGTACATGCCCAGCTGGCCTTTTTCCAACGGGCAACGGCACACCGCTTTCTGCCCTCAGgctgTGAAATGGCTTTATTATTCCCAATGCGCTCCAAGCACATCTTCGCAGAGGTAACACCCTCCATGTCCATGTTCCTAAACTCGTTCACCATCTGTCTGTGGGCCAAAGTGACTCAGTCGCTAAATAAAACAGTGCTTTTCTCTTACGGAACCAAGAAAAACCCTCAAGAGCTCCAGCTTCTTTTGGCAAGACGCTCGGTGCTCCTCACAGTGGGTGGTGAGACCCATCTAGTGGAAGCTCACAGCGTAGTAGCAGATGGACAGTGGGGACACTTCTGTGCAGCTTGGAGCTCAGAGGAGGGGCTGGCCGCTTTATGGGTGAATGGAGAGAATGTTGCCAGAGTGCACGGAGTAGCCGAAGACTACGTATTGCCCAGTAATGGGTTCGTTCTGCTCGGGCAAGAGCGCAGCCGCTCGGGTATCTACAAAGACCTGGACTCATCGGTTGCGTTCACAGGAAAAATGACAGGAGTGAACATGTGGGATCACGTGCTGGAAGCAGGGAGGATTAAAGAGTATGCCAATCAAGACGGATCATGTGATAAGATTGGGAATGTGATTGGATGGGGTGTGTCAGAGATCAATCCACATGGTGGCTCTCAATATATCAACTGAGACTGCACCTGTATTAAGTAATATTACATTGCATATCATCAATGATTTTGTATTTACCTTCTTTTCATTCCAAATGCAAAGCACtgcttaaaggagtagttctgCCAAAACATCAAACTTGCCGTTTACTCATGCTCAGGCCGTCCAAGATTCTTCAGTACAAAAGAAAATTTTCAGTCGAACCTATGATCCCTGGTGGTTCATTAAATGCAgatcaagagaaaaaaaaagaaaaagacaaaatgaatgCCATGGCTGCTAATGATATATTGAGGTTTTcagaattcattatttttttctgtaaccattttttttactgacagtACCCATTAACCTATATTTGATGAGTATAACACATAGAAACATGGttacaaacaactaaaaatctTCAGTACTGTCAAAAGCATCTTGAATGGCTTgacaatgtttaatttttgagcaaactatttctttaaagagataatcttcataaaaataatatttctatcaTCATACACACCCTTATGTCATAGGCCTATATTTTGGATCGTTTGCCCATGTAATGAAATCCAATGGGGTACAATGGAATTTTATTGTagagttaaaaacatctgaaacattCTCCAAAATATCCAACATacacaagaaataaaatcaagcaTGTTTAGAATTAAATAATGAAGGATGAATGATGATGCAAATTTCATTTCTGGATGATGATctctttaacattaaaacactgTACACCAAGccaattaaaatagtttaatattgtgtattttttaaccTCTTAAGACCCATGAAAAgagttttataattttttgttttaatttaattgtttagaGTAGTAAAaataatctgcaaaaaaaacaaggatTTTTAATCCATAGTTTATGTCCTTGTTTGAGGACATCGGGAcccaatttctttaaaataatgaaaatacatgAATGGGATTAAATTCACCAATacacttttagtttttaagttattttttgtttaccaaaCTTTGTATAAAGAAGACTCTCAACTTTGATATAACATAAGTATTCGATATACCATTTTTCTTTGGCAAAATTTGCGTAAAATGGTCATAGACAGGTTTTCTCACTACATACAATGTATCTATAAACTACATTGAATTTGCATCTTAATGTGTTTTGGGGGCAACATATCAtgaaaaaagaagtgtaataatgGGAGTCATAATTGACAagaatttcataaaaatgtgtaatatttattagaaCAAGGAGACCATGGTGAAACATCCAATCATTTGGTATCTCTAAAAAGCCCTGAATGTGCTCTGTACAggacatccagactcaaaactgtGACATGTACAGTCTCAGAGAAattcaacaaaatataaatgtcctCATCTGAGGCCGCAGGGTCTTAAGaggttaattattattattttactttttagcGGAGAATTCCATTACCATGTAAATAAATTAGGTACACGAGTAAAGAGCTAATAAATTCGAGTGGTGTGGTTCA
>XM_043224682.1
CATTTGAGTACATCACATATGCTGCCCACCTCCAACAAAGTATTACTCACGCTGTGACAGCCCTGctctgtgttgtgtttaaaAGAGCTTGCTCAGCCTCATGTACGTTCAGTGGGCTGACACATGAGGGACGGCGACTGTGTAACAACACAGGAACAACCACAAGGCATCTTAGTGGCTGTGGAACATCTGATTTACTTCAAAATAATCTGATTACATGCTGGGGCAGACTAACATACACACCAGCATTAACATCAGAATGTATGTGCCCGGGGCCATGCTGGCCCTCTGCCTGCCCTGCTTTTTGAGTGGGAATGTGTTTGGTTATGAATATGGAGAGGATTACTCTGATTCCTACTATAATGAAATCTCCAATGGTGAACGTCTGCAAAgagctacACAAATTCCCTGTCCGCCTCAGGACCTCTCACGCTGGGACAAACTTTTCATCATGTTGGAGGACTCTCAAATGAAGCACAACATGCTTATGCAGCAGAATGAAGACATGGTAAAGGCAGAGATGGAATCTGTACGGAAGGAGCTCCATAAGcttaacaacaacaaagcatGCGTCCAAGCCTCAGAAAACACCTGTAAATGTATAAGTGAACAGATGAACCGAAATCTGAACCAAGCCATGGAGCAGCTCAGAGAAGCAGCAGATACGTATCAAGCCCAAAACAACGAAACACTGCAGCAGCTCATTCAGTTCAGCAGGAACCAGGCCACCCGTCTCACCAAACTGGATCGCAGCTCACTGCTGGGGGCCGGTCTGGGGCAAGTGGCCATGAAGTCCTTCTCCACTTATCCAAAAGAACAAGAAGCAAGCAATGCAGATGCAGGGAAGCTGGAGAGAGCACTTATGGCTACTGTTGCGGATCTCCAAAGGGTACATGCCCAGCTGGCCTTTTTCCAACGGGCAACGGCACACCGCTTTCTGCCCTCAGgctgTGAAATGGCTTTATTATTCCCAATGCGCTCCAAGCACATCTTCGCAGAGGTAACACCCTCCATGTCCATGTTCCTAAACTCGTTCACCATCTGTCTGTGGGCCAAAGTGACTCAGTCGCTAAATAAAACAGTGCTTTTCTCTTACGGAACCAAGAAAAACCCTCAAGAGCTCCAGCTTCTTTTGGCAAGACGCTCGGTGCTCCTCACAGTGGGTGGTGAGACCCATCTAGTGGAAGCTCACAGCGTAGTAGCAGATGGACAGTGGGGACACTTCTGTGCAGCTTGGAGCTCAGAGGAGGGGCTGGCCGCTTTATGGGTGAATGGAGAGAATGTTGCCAGAGTGCACGGAGTAGCCGAAGACTACGTATTGCCCAGTAATGGGTTCGTTCTGCTCGGGCAAGAGCGCAGCCGCTCGGGTATCTACAAAGACCTGGACTCATCGGTTGCGTTCACAGGAAAAATGACAGGAGTGAACATGTGGGATCACGTGCTGGAAGCAGGGAGGATTAAAGAGTATGCCAATCAAGACGGATCATGTGATAAGATTGGGAATGTGATTGGATGGGGTGTGTCAGAGATCAATCCACATGGTGGCTCTCAATATATCAACTGAGACTGCACCTGTATTAAGTAATATTACATTGCATATCATCAATGATTTTGTATTTACCTTCTTTTCATTCCAAATGCAAAGCACtgcttaaaggagtagttctgCCAAAACATCAAACTTGCCGTTTACTCATGCTCAGGCCGTCCAAGATTCTTCAGTACAAAAGAAAATTTTCAGTCGAACCTATGATCCCTGGTGGTTCATTAAATGCAgatcaagagaaaaaaaaagaaaaagacaaaatgaatgCCATGGCTGCTAATGATATATTGAGGTTTTcagaattcattatttttttctgtaaccattttttttactgacagtACCCATTAACCTATATTTGATGAGTATAACACATAGAAACATGGttacaaacaactaaaaatctTCAGTACTGTCAAAAGCATCTTGAATGGCTTgacaatgtttaatttttgagcaaactatttctttaaagagataatcttcataaaaataatatttctatcaTCATACACACCCTTATGTCATAGGCCTATATTTTGGATCGTTTGCCCATGTAATGAAATCCAATGGGGTACAATGGAATTTTATTGTagagttaaaaacatctgaaacattCTCCAAAATATCCAACATacacaagaaataaaatcaagcaTGTTTAGAATTAAATAATGAAGGATGAATGATGATGCAAATTTCATTTCTGGATGATGATctctttaacattaaaacactgTACACCAAGccaattaaaatagtttaatattgtgtattttttaaccTCTTAAGACCCATGAAAAgagttttataattttttgttttaatttaattgtttagaGTAGTAAAaataatctgcaaaaaaaacaaggatTTTTAATCCATAGTTTATGTCCTTGTTTGAGGACATCGGGAcccaatttctttaaaataatgaaaatacatgAATGGGATTAAATTCACCAATacacttttagtttttaagttattttttgtttaccaaaCTTTGTATAAAGAAGACTCTCAACTTTGATATAACATAAGTATTCGATATACCATTTTTCTTTGGCAAAATTTGCGTAAAATGGTCATAGACAGGTTTTCTCACTACATACAATGTATCTATAAACTACATTGAATTTGCATCTTAATGTGTTTTGGGGGCAACATATCAtgaaaaaagaagtgtaataatgGGAGTCATAATTGACAagaatttcataaaaatgtgtaatatttattagaaCAAGGAGACCATGGTGAAACATCCAATCATTTGGTATCTCTAAAAAGCCCTGAATGTGCTCTGTACAggacatccagactcaaaactgtGACATGTACAGTCTCAGAGAAattcaacaaaatataaatgtcctCATCTGAGGCCGCAGGGTCTTAAGaggttaattattattattttactttttagcGGAGAATTCCATTACCATGTAAATAAATTAGGTACACGAGTAAAGAGCTAATAAATTCGAGTGGTGTGGTTCA

Function

NR:

description
PREDICTED: pentraxin-related protein PTX3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224672.1 False 3047 mRNA 0.40 3 17025191 17029802
XM_043224682.1 True 3052 mRNA 0.40 3 17025183 17029802

Neighbor

gene id symbol gene type direction distance location
klhl6 klhl6,LOC107591321,LOC107706408,LOC107684416,LOC107558769,LOC107738218 coding upstream 10831 17009566 ~ 17014352 (+)
pak2a pak2a,LOC107738196,LOC107684413,LOC107659428,LOC107706409,LOC107557297,LOC107591323 coding upstream 15956 16997089 ~ 17009227 (+)
ing5b ing5b,LOC107738258,LOC107706410,LOC107591443,LOC107557337,LOC107659430 coding upstream 28568 16994689 ~ 16996615 (+)
LOC122356618 LOC107738189,LOC107684434,LOC107591326,LOC107559148,LOC107706401,LOC107659373 coding upstream 177628 16843721 ~ 16847555 (+)
LOC122361612 NA coding upstream 301625 16722128 ~ 16723558 (+)
pdcd10b LOC107684411,LOC107557361,LOC105906142,LOC107706406,LOC108411198,LOC100709687 coding downstream 10200 17040002 ~ 17044773 (+)
nrd1a nrdc,nrd1a,LOC107738192,LOC107684410,LOC107706405,LOC107659423,LOC105906141 coding downstream 64382 17094184 ~ 17105967 (+)
fam163aa si:dkey-193b15.8,LOC107591327,LOC107684409,LOC107738190,LOC107706402,LOC107557375,LOC107659374 coding downstream 79764 17109566 ~ 17123064 (+)
rabgap1l2 rabgap1l2,LOC107706404,LOC107659372,LOC107684408,LOC107559133,LOC107591424,LOC107738216 coding downstream 94979 17124781 ~ 17128359 (+)
gadd45bb gadd45bb,LOC107738256,LOC107591447,LOC107706329,LOC107559165,LOC107659370,LOC107684432,LOC105906135 coding downstream 115571 17145373 ~ 17147065 (+)
G12782 NA non-coding upstream 46427 16950834 ~ 16978756 (+)
G12784 NA non-coding upstream 58081 16958408 ~ 16967102 (+)
G12776 NA non-coding upstream 67924 16936932 ~ 16957259 (+)
G12781 NA non-coding upstream 69306 16946874 ~ 16955877 (+)
G12773 NA non-coding upstream 73470 16929508 ~ 16951713 (+)
G12818 NA non-coding downstream 93337 17123139 ~ 17123367 (+)
G12823 map1sb,LOC107738188,LOC107659421,LOC107591330,LOC107684407,LOC107706295 non-coding downstream 103275 17133077 ~ 17134888 (+)
G12972 NA non-coding downstream 131374 17161176 ~ 17162972 (+)
G12975 NA non-coding downstream 152382 17182184 ~ 17270444 (+)
G12982 diras1b,LOC107659419,LOC107591332,LOC107557388,LOC107684404,LOC107738254,LOC108236225,LOC103373792 non-coding downstream 157315 17187117 ~ 17190607 (+)
LOC122361622 NA other upstream 248832 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 568651 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 756386 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 1149419 15860179 ~ 15875764 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 1775934 15241797 ~ 15249249 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 2337 17032139 ~ 17039903 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 332443 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 537039 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 577450 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 749537 17779339 ~ 17782364 (+)

Expression


Co-expression Network