hes6 (hes6,LOC107737402,LOC107572989,LOC107728379,LOC107569265,LOC107679391)


Basic Information

Item Value
gene id hes6
gene name hes6,LOC107737402,LOC107572989,LOC107728379,LOC107569265,LOC107679391
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23783724 ~ 23786255 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224868.1
GACGTAGCAGCCTTTATGAATATTATACTTTGACCTAAATGTGCAGTACATTTTTCAGTAGCGATGGATGTTCAATTTTAGCACCTTTTTGCTTTACATTCATGTGTACCTTCATAGACGGCCTCAGAATAAAGCACTGGTGATGGCCCacagaaaattagtttttttttttttttttattatgtcatGCATTAAAACGACCTGTCAGCCTTTCAGATTGTCTTTGCCACTTATTTTTCAATTTCTACTTGAtcctttaataaaatcaaagacAAACAATGAGCTGTCGCTCTTTATATTGCTCACAAACATCTGTCAGCCTCAATATAGGTGACAAGATGTAATTTCTTAAGTGAACAACTTTAATACTTCAATTTGCTTTCTTAATACTAAACACCATTCCACGCCTAGAAAACCTTTTTGAAAGCTTATTTCTGATTGTATTCTGTAATTTTCACAATATCAAGGTTCAACTTTTTTCCAAGCAAAAAATACATGAGCTGGTTCCAATTTAAAAACTGCAgtgaaattattgcattttattaactgCCTCGATTGTTCATCTATCTGTCGtctgattttattcactaaactGTCCTCTAGTCCATGCAGGTTCACAGGGCGGGTTGGTTTACAGTGCCCAGACAAAGGCAAGGCCGTTGATTGGTTACCAGTCAGTCCATTCACATGTAAATCAGCTCTCATAAATGTCCCCCTTCAATCGCCCACTTTGCACAGTATATGTAGTGCTTGTTAGCACAGACTTTTGTCTCGAACTGAACCCGCCGACCATCTGCCCCCCATTCAGGCGTCCTCTCAGCGGTCTCTATACTGCAGCAATATGGCCCCTGCGTCCCGCAACAACAGACACGAGGAGGACTATTTCGGAATAAAAGACAGAAAGACGAGGAAGCCGCTGGTGGAGAAAAAGAGACGCGCCCGCATCAATGAAAGTTTACAGGAGCTGAGGCTACTGCTAGCCGACCCGGATGCGCAGGTGAAAATGGAGAACGCCGAGGTGTTGGAAATGACCGTGAAGCGCGTGGAAAGTATCCTGCAAAACAAAGCGAAAGAAGCTGACAGCGTGAACCGCGAAGCCAACGAGCGCTTCGCCGCGGGATACATCCAGTGCATGCACGAGGTGCACACCTTCGTGTCCAGCTGCCCGGGAATCGACGCGACCATCGCCGCCGACCTGCTCAACCACCTGCTCGAATGCATGCCTCTGAACGACGAGGATCGCTTTCAGGACATCCTGTCAGATCTCCTGTCGGACTCTAGTAACTGTGGCACTTGGCCCGGCGACAGGAGCGCGGTCAGCGGCGGCTCTTCGGTCTTGTCCCCGgccccctccaccacctccagCGACGACCTTTGCTCCGACCTGGATGACACGGACACCGAGCACAGCCGAGTCTCGGTGGACGCCGGGGAGCAAGCGCCGGGCGCGCCGACCGCGTATCTCTCCAAGTCCATGTGGAGACCTTGGTAGACAGATCCCAGCTGATTCACGAACAGTCTATTTTTAGTTTAGAGCTATATAAACACGCAATAGTCCAGGAGCACCTTTACGATAGTCCATAGGAATAGGGCAGCTGCAACGTTTTATgtcatttgtgaccctggaccacaaaaacattACCTGGAAGCTGAACACACGAGCTTTCCATTgacgtatggtttgttaggacgctattttgaaaatctgagggtgcaaaaaaaagttgtccaaataataTCACAGTTGGAAATTCACAAAACATCTTCACGGAACGTGATCTCCACTTGCTATCCTAAGGATTTTGGGCATAAAAGAAATATCTATACTTTTGACCCAAtgcattgttggctattgctacaaacataccTGTGCGACTCACGTTTTGTTGGACCAGGTTCACATTTGTCACCGACCTGTGGATACCCCTCAGAAGCTCTTCTTGGCGCGACAACGCgcatttcagttcagtttcacacaaaagttcgtgtttttatttaattgtttttgtataagCTAAGTTAAAACAACGCGCGTAaggataaataatatttctaggGAGCGTCTTCCCGTCTCTAATTATTGTAGGCTAGGgtgtaaatatttcaatgtcGTGGCTGTAGATATAGATCTCTGACATTGTGTGTCATTATGAAGTGATTtcgaaataaatgtaaatctcaGATGTACTGACGTCTAATGTGTTTAATATGTGACCGATTTCAATAAAACCTTTTGATTGTAA

Function

symbol description
hes6 Enables protein heterodimerization activity. Acts upstream of or within negative regulation of transcription, DNA-templated and somitogenesis. Predicted to be part of transcription repressor complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; margin; optic vesicle; pectoral fin; and segmental plate. Orthologous to human HES6 (hes family bHLH transcription factor 6).

NR:

description
PREDICTED: transcription cofactor HES-6

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0017053 transcription repressor complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K09087 HES2_6_7; hairy and enhancer of split 2/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224868.1 True 2243 mRNA 0.45 4 23783724 23786255

Neighbor

gene id symbol gene type direction distance location
lpar5a LOC107737401,LOC107698486,LOC107572991,LOC107679392,LOC107728381,LOC107569267 coding upstream 8541 23772880 ~ 23775183 (+)
LOC122356725 LOC107698487,LOC107737400,LOC107679394,LOC107572992,LOC107728385,LOC107569271,LOC793909 coding upstream 13232 23765958 ~ 23770492 (+)
trnaw-cca_1 NA coding upstream 46602 23737051 ~ 23737122 (+)
pitrm1 pitrm1,LOC107698483,LOC107679400,LOC107724807 coding upstream 68487 23703501 ~ 23715237 (+)
klf6b klf6,LOC107698482,LOC107679408,LOC107572997,LOC107724813,LOC107569266,LOC107728392 coding upstream 81460 23698257 ~ 23702264 (+)
LOC122323665 NA coding downstream 133976 23920231 ~ 23925631 (+)
LOC122323657 NA coding downstream 143376 23929631 ~ 23931889 (+)
LOC122328481 LOC107599284 coding downstream 208928 23995183 ~ 23997150 (+)
LOC122324443 NA coding downstream 242749 24029004 ~ 24032203 (+)
LOC122327432 LOC107549368 coding downstream 284954 24071209 ~ 24073204 (+)
G14889 NA non-coding upstream 3604 23777103 ~ 23780120 (+)
G14859 NA non-coding upstream 20899 23719642 ~ 23762825 (+)
G14872 NA non-coding upstream 37171 23744871 ~ 23746553 (+)
G14860 NA non-coding upstream 60977 23722266 ~ 23722747 (+)
G14841 NA non-coding upstream 91864 23690422 ~ 23691860 (+)
G14863 LOC107728390,LOC107572994,LOC107737392,LOC107569272 non-coding downstream 5007 23791262 ~ 23795903 (+)
G14896 per2,LOC107572994,LOC107698490 non-coding downstream 17529 23803784 ~ 23804629 (+)
G14978 NA non-coding downstream 92923 23879178 ~ 23879604 (+)
G14979 NA non-coding downstream 97507 23883762 ~ 23884416 (+)
G14988 NA non-coding downstream 140785 23927040 ~ 23927250 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other upstream 235750 23545106 ~ 23547974 (+)
LOC122324535 NA other upstream 778470 23003165 ~ 23005254 (+)
fcer1gl LOC107671799 other upstream 1088394 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 1109449 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 1298069 22461916 ~ 22485655 (+)
LOC122323670 NA other downstream 149666 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 259430 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 273157 24059412 ~ 24062202 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other downstream 297583 24083838 ~ 24096897 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other downstream 455617 24241872 ~ 24249991 (+)

Expression


Co-expression Network