LOC122354667


Basic Information

Item Value
gene id LOC122354667
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11585825 ~ 11587904 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252946.1
TTATGTCATTAGAAACAAAGACTTTGATGCGTACTCTGCATCTtcagattatttatatattacctGCTGGCGGCTGAATGACAAGTACAGATGCTAAAGAAAAAGAGTCTGGGGAATTGAAATCATCCACGTGTTAAACGTACTGCATAAATTGCCTTCTTTCGTATCCTCGTCGCATAACCTAAACATTTTTCTCGAGGAAATGAAGATCCGCGCAGATTTATGAGCGGACGCTGCAGTGAAGACCTACAGAAAGCCGTCACGAATGCTCTGCATCACATTACAACAGTAAAATATGTCAGCGTTTCAGATGTTTATGGAGAATCCTGATGATGTCTATGGCGTTTGTGACGGAGGGATGACGGCGCCCTCCTCCAtggattttttgcattttaacaggAGTTTGGTTGAGGTTTCTTGTGGACGTGACTCTTCGATCCATGCAGACGGCTGTTCTTCTGTCATAAATCATGTATTTTATCAGGAACAACAGGAAGTTTGGACCGGTTGGACATGCTTGAGTCCAACGGAAGAGTTTCACAGCACTCGGAACGGACAAATATGGGAAGAAAGGTTCCACAGTTCAGTCACGGATAGATCCGTTGATCTGAAGCCCGGTTTAAACGCGAACCGGTTTACCTGCCGGTGGCTGGAGCGGTGCGCAGGTGCTCCACAGTGCTGTAAGAGAACCTACTGCACAATGAAGGAGCTCATCTCTCATCTGAAAGCGGAGCATGTTAATCTGTCAGGACAATCCGGTTACGTTTGTTTGTGGGAAGACTGTTCTCGTCAGAGGAATCCGTTCAAGGCCAAGTACAAACTGATCAATCACCTAAGAGTGCACACGGGAGAAAAGCCCTTCCGGTGCCCTTTCGGATGTGGAAGAGCATTCGCGCGCGCGGAAAACCTGAAGATTCACGAAAGGACGCATACAGGTGAAAAACCTTTCAGATGCCCTTTTGAGGCCTGTGAAAGGCGTTTTGCGAACAGCAGTGATAAACAAAAGCACATACGTGTCCACGCAGCGGAGAAACAGTATATTTGCATGCACTGCAGTAAATCATATTCTCATGGGAGCTCCCTCAGAAAACATGCAAAGGTCCACCAGCCAGTCATGGAATCTACTCAGAACTACAATTACGGCAACAAGCATCCAAAAAAGATCCAAGCCTTCGAATAGTATTTTAAGGTGTGCCTTAGAGCAAAATTGAGCATGTTTTTCATCATAATAAAATCAGAAGTATCAGCATGTGAGAAAGGAGCTCCACAGCTCTGAAACTCATAGCAgttgtataatttaataatttaaacaagaaaaactaTTGGtgagtaatttattatataccagttgattttattttacatgattttagtgttttgcttttttacagAACAAACATAACCACaataacaaagaaaagaaaacataattacaataataaaatataaattaaaatataatacccTATGACAGAACCCTGAGAGAAAAATGCATACAAAGGCAAATTAAACTTAACTGGTCAGGTAATGCATAATCAGGATACAAATTCatagaaatcattgtaatgattttatttataataaatgtaagtgAACAGTCTTTAAAAAATTCCCATTTCTAGTCTGTGGaggataaataatatattaatacacataaatattgaCACCCAAAAACaatgtgttattgtaattatgttagtaaatattgtacatttcacGAGACAGCAGTCACGGcacaatataatatacagaCATAgtcataaatatgaaatatgaaactcTAAACGCAAGTGTTAACaatgttttaatacaaaatcaTCTACATTTTGTAGTTGTCTTGTAAAGTGATTTATGTTCAATTGaagtgtaataaaacattaaacact

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252946.1 True 1886 mRNA 0.39 3 11585825 11587904

Neighbor

gene id symbol gene type direction distance location
rab3aa rab3aa,LOC107585037,LOC107722633,LOC107688479,LOC107709895,LOC107550615 coding upstream 115 11581166 ~ 11585710 (+)
pde4ca pde4ca,LOC107688476,LOC107680260,LOC107709896,LOC107722623,LOC107585054 coding upstream 5402 11541545 ~ 11580423 (+)
mpv17l2 mpv17l2,LOC107585061,LOC107688480,LOC107709899,LOC107722522,LOC107680257,LOC107550616 coding upstream 44841 11538949 ~ 11540984 (+)
ifi30 LOC107722513,LOC107688478,LOC107586582,LOC107680256,LOC107550617,LOC107709898 coding upstream 47018 11536965 ~ 11538807 (+)
pik3r2 pik3r2,LOC107688475,LOC107709897,LOC107550618,LOC107586063,LOC107722495 coding upstream 49929 11508712 ~ 11535896 (+)
agtr1a LOC107584999,LOC107722527,LOC107688540,LOC107680245,LOC107550594,LOC107709880 coding downstream 5247 11593151 ~ 11598650 (+)
gyg1a LOC107709894,LOC107722604,LOC107688484,LOC107550614,LOC107680244,LOC107585020 coding downstream 10983 11598887 ~ 11605633 (+)
stag1a stag1a,stag1,LOC107722576,LOC107688487,LOC107586054,LOC107709887,LOC107680237 coding downstream 52455 11640359 ~ 11679922 (+)
msl2a LOC107722612,LOC107688489,LOC107584967,LOC107709889,LOC107680240,LOC107550607,LOC107709890 coding downstream 97873 11685777 ~ 11690923 (+)
ppp2r3a ppp2r3a,LOC107722551,LOC107550604,LOC107732512,LOC107680219,LOC107584952 coding downstream 122280 11710184 ~ 11782407 (+)
G11191 NA non-coding upstream 128961 11456326 ~ 11456864 (+)
G11190 NA non-coding upstream 130417 11454258 ~ 11455408 (+)
G11189 NA non-coding upstream 131714 11453571 ~ 11454111 (+)
G11186 crsp7,LOC107688472,LOC107722610,LOC107585090,LOC107550620 non-coding upstream 136392 11448763 ~ 11449433 (+)
G11179 crsp7,LOC107722610,LOC107585090,LOC107688472,LOC107550620,LOC107709903 non-coding upstream 137264 11446512 ~ 11448561 (+)
LOC122328936 NA non-coding downstream 21347 11609251 ~ 11613566 (+)
G11207 LOC107688485,LOC107585026,LOC107550612,LOC107709892,LOC107722651 non-coding downstream 26337 11614241 ~ 11618863 (+)
G11419 NA non-coding downstream 512971 12100875 ~ 12101126 (+)
G11505 NA non-coding downstream 749763 12337667 ~ 12339049 (+)
G11590 NA non-coding downstream 957449 12545353 ~ 12545592 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 78121 11482104 ~ 11507704 (+)
rps28 NA other upstream 141254 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 244714 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 247356 11303678 ~ 11338469 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other upstream 321591 11229760 ~ 11264234 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other downstream 320169 11908073 ~ 11937590 (+)
LOC122358236 NA other downstream 1035919 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 1280025 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 2587460 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 3158203 14746107 ~ 14753161 (+)

Expression


Co-expression Network