XLOC_006635 (csgalnact2)


Basic Information

Item Value
gene id XLOC_006635
gene name csgalnact2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25569831 ~ 25581303 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012812
ATGCCCAGACGGGGGCTTCCTCTGCAGGGGCGGGCACGCTGGCTTCTCCTGGGTGTTTTCCTGTTGGTGATACTGCTTCTCTTTGCTTATCTGCTGGAGTGCACACCGCCTGCAGACGTGAGCCAGGTGCTCCCAGGTCTGGCAGGAGATCCGTATGGAAAAGAGTATTACCAAGCCCTCTTACAGGAGCAGGAAGAGCGCCATCTCAGCCGAGCGGCCAGCCTGAAGAGGCAGATCGCACAGCTCAAACAAGAGCTCCAGGAGATGAGCGAGAAGCTGCGGGTGCTTCAAGAGAAGAAGGAGGGTCCCGGGCCGCAGAGTCTGAACGATGGCAGGGATCAAGAGCCAGGTGATCTCCTGGAGTATCTGCATTCACAGATCGACAAGGCCGAGGTGAACACTGGAGCCAGGCTGCCCAGTGAATATGCGCTGGTTCCCTTTGAGAGCTTCACCACCACTAAAGTGTACCAGCTGGAGATGGGTTTGACTCGCCATCCTGAGGAGAAACCTGTGAGGAAGGACCGGAGGGATGAGCTGGTGGAGGTGATCGAAGCTGGTTTGGATATTATTAATAACCCTGAGGAAGACGATGGACAGGAGGACAACATTCCTATGCAGAGGCAGACCTTCACTGAAAGCCAATTTTTTGAAGGGCTCTACAGGACGGAGAGGGACAAAGGCACACTGTATGAGCTCTACTTTGCTAAAGAGAATTCTCATGAGTATCGTCACGTCACCCTCTTCCGGCCGTTCGGGCCCCTCATGAAAGTGAGGAGCACGTCTGTGGACACCGCCAGTGCCATCATTAACATCATAGTACCGCTGTCGGGACGCACTGAAGCCTTTGTTCAGTTCTTGCATAACTTCAGGGAGGTTTGTATCCAGCAGGACAAGCGGGTCCATCTCACAGTGGTGTATTTTGGGCAGGCAGGCTTGCAGGATGTGAAGGAGTCTTTGAAGAAAATGGCCAGTGAAGAGAGCTTCAGTAACTACACTCTGATCCCTGTGGATGAGGAGTTTTCTCGAGGTCGTGGTCTGGATATTGGAGCTCATGCGTGGGAGAAAGGAGGAGATGTGTTGATGTTCTTCTGTGACGTTGACATCTACTTCACACTGGAGTTTCTCAGCACCTGTCGACTCAATACAGCTCCAGgaaagagggTTTTCTATCCGGTGGTTTTCAGTTTGTATAATCCAGCTATAGTTTATGGAAATCTGGAGTTTCCGCCACCCATTGAGAGTCAGCTGATTCATAAAAAAGATGCTGGGTTCTGGAGGGACTTTGGATTTGGCATGACTTGTCAGTATCGCTCTGATTTCCTCAATATTGGAGGATTTGACCTGGAAGTGAAAGGTTGGGGTGTTGAAGATGTGCACTTGTACAGGAAGTACCTGCGGAGCGATCCGATCGTGATCCGCACCCCCGTCTCAGGCCTCTTCCACTTGTGGCACGAGAAGCTGTGTGCTGATGAACTGACCCCAGAGCAGTATCGCATGTGCATCCAGTCCAAGGCCATGAACGAGGCGTCTCACTCTCACCTTGGCATGCTGGTCTTCAGAGAAGAGATCGAGACGCACCTGCGCAAACAGGCCTACAAAACCCAGAGCAGACCCGCAGAATGAAGCACATACACAAGCAACAGCACAGCAACAGAGAACAGTTGACTTCTTATCATTTCAAAACAATCCATCAATTACAGaatgttaaagggttagttcacccaacgATTTATATTGTGTTATTAATGACTCATTCCAGTCCCCGTGAggccttcgttcatcttcagaacacaaatgatgatattttagatgaaatcctggagctctctgacCTTCCATAGACATCAGCAGTTCTGAGATGTTCATGGTCCAAAAGAAGAACTAAAAACACTCCATGTGACTTCAGGGGTTCAACTTACAACATACAAAGCTCCATACCTTTGTGTGTCAAAACATCTTGTTCTTAGAGCTTTTTTGGGCAAATTTCATCTTAATTATGTTCATTTTTTGTAAACGAAGATGAAAGAAGGTCTCGGGGGAATGGAatgacatgatgatgatgatgatgagtgatTAATACAGAATTCtatatgtttgggtgaactaaccctttaagtatGGTGGAAGGATGGTACCAATCGGTATTAATGAACTGTTTACATCATTTACACTTGATCTAGGTTTTATCAAAGGCTTTTTGGATTTATATGTGAATAACGGTCAGTTCTTTTTTGGAAGTGAGTGATTGAAGAGAAATAATGTGGGCCACATTCATGAAAACTGTTTGATTTGTGCAGCTACAAGCTATCTTACTGAATAGCTTATAAAATGTTTTCTACAAATGATTTTGCACAGAAGTTGGTCTGCTCATTAAGATGTGCCAAGTGTGACGCATGTcttagttgtttttttatgttgaaatGACCTGATGGAGCTAtatgttgtgtttttatattactaCTGTCGAAAGTGTTTGCGTCGACGCAGAAAGGGAGAAGTTTTGCATACATAGATGAAAGGGACAATCATTCACAAACTGCTCAAGCTGGATTTATGTTGGAACAGTATTCAGACTTTTCACAAAATCTTCCTCAGTTTATTTGCTGATTGAATAAGCATGGAGCTGATGTGCAGTTTGATGCATGTGTCAGGCTTTTACTTTACACCGTGTGTGAGGACACTGCTCAGTGCCATACAGTTAAAGGGTTAGCTCACACCAGAAATGAGAATTCTGTCAACTTGCTGACCCTCATTAAGATCTaaatttatcttcagaacacagaTGAAAATACATTTGAATCGAATCTAAgatattttttgtcagttttgaAAGCCTGATGCTTTGTAATGAGCCAATTCTACTAATCTAAATCTGCTGAAAAAGATTCAATGGAAAGTTTTGGCTTTTATTCAAGTTAACAATCGGCAAACTTAACCAAACTCAATCAGTCACTTGAGCAAGGACAAACCTTGTTGATTCTTGCAGAAGTTCACACGTGAAGAAAGAACCTCATT

Function

symbol description
csgalnact2 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Acts upstream of or within chondroitin sulfate proteoglycan biosynthetic process and heparan sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cartilage element; nervous system; notochord; pronephric duct; and tail bud. Orthologous to human CSGALNACT2 (chondroitin sulfate N-acetylgalactosaminyltransferase 2).

GO:

id name namespace
GO:0050650 chondroitin sulfate proteoglycan biosynthetic process biological_process
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0047238 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5186 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Acts upstream of or within chondroitin sulfate proteoglycan biosynthetic process and heparan sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cartilage element; nervous system; notochord; pronephric duct; and tail bud. Orthologous to human CSGALNACT2 (chondroitin sulfate N-acetylgalactosaminyltransferase 2).

Ensembl:

ensembl_id ENSDARG00000061400

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012812 True 3015 mRNA 0.45 7 25569831 25581303

Neighbor

gene id symbol gene type direction distance location
XLOC_006634 mcmbp coding downstream 20949 25531004 ~ 25548882 (-)
XLOC_006633 BX005252.1 coding downstream 39183 25530534 ~ 25530648 (-)
XLOC_006632 tial1 coding downstream 85079 25472005 ~ 25484752 (-)
XLOC_006631 itprip coding downstream 161444 25403413 ~ 25408387 (-)
XLOC_006630 plaua coding downstream 264652 25297257 ~ 25305179 (-)
XLOC_006636 ret coding upstream 3253 25584556 ~ 25632756 (-)
XLOC_006637 si:dkey-192p21.6 coding upstream 60747 25642050 ~ 25720907 (-)
XLOC_006638 sgpl1 coding upstream 144244 25725547 ~ 25750910 (-)
XLOC_006639 pdlim1 coding upstream 181605 25762908 ~ 25774183 (-)
XLOC_006640 NA coding upstream 195086 25776389 ~ 25778815 (-)
XLOC_006471 BX537274.2 misc downstream 15304926 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 24743606 825904 ~ 826225 (-)
XLOC_006629 NA non-coding downstream 285115 25210158 ~ 25284716 (-)
XLOC_006619 NA non-coding downstream 946606 24590420 ~ 24623225 (-)
XLOC_006620 AL831745.2 non-coding downstream 963204 24602410 ~ 24606627 (-)
XLOC_006618 AL831745.1 non-coding downstream 981611 24585224 ~ 24588220 (-)
XLOC_006643 NA non-coding upstream 265229 25846532 ~ 25853311 (-)
XLOC_006644 NA non-coding upstream 428194 26009497 ~ 26703804 (-)
XLOC_006645 NA non-coding upstream 952051 26533354 ~ 26544816 (-)
XLOC_006646 AL627132.1 non-coding upstream 985763 26567066 ~ 26567184 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_11995593_12005292 CGAT2, CSGALNACT2 coding CI01000012 null 11995593 ~ 12005352 (+)
bowfin (Amia calva) AMCG00003216 csgalnact2,LOC106604550,LOC102795995 coding CM030139.1 CM030139.1 14808618 ~ 14826815 (+)