klf17 (klf17,LOC107739832,LOC107657420,LOC107599908,LOC107730790,LOC107700996,LOC107559026)


Basic Information

Item Value
gene id klf17
gene name klf17,LOC107739832,LOC107657420,LOC107599908,LOC107730790,LOC107700996,LOC107559026
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15516806 ~ 15518976 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253230.1
AGACAGCCAGTCAGACGAATTAGAGACGCATTGTCTATCTCGGACTGAATGAGAGCGAACAGATACTAAGTTCCCTAACATTTGCAACATGGCTCTTGCAGATGCGATGTTGCCTTCGATAAATACCTTTGCAAGCAACCAGATGTTAGACGAAAAGCAGTCTGCAATTGTTCGGgacTGGAAAGTCGACCCAACTAAAACCAGCGCAACAGTTGGAGACGCGAGACCCCTCATCGAGGTGGAGTTCAGCATTGTCGAATCCCCGCATTTGGCCAAAGACGAGGATGACCTTTCCAAGTTTTTGGATCTAGAGTTCATTCTGTCTAACTCGGTCGCGTCTGACAACGACAACTCGGTGCAGCAGCAGCCCGCCTATTCTCTGCCGGAGTCCCCAGAAAGCTGCAGCACCGTGTACGACAGCGACGGATGTCACCCGACGCCGAGCGCGTATTGTGGCAACACCTTTAACGCGCGTCCCGGGCACAGTCTGGTAGCCGAGTTGTTTACTCCGGACGTGAATTATCACGGCGACTCGCATGAATATAGTTTAAAGGGACATTTGGAGAGGTTGGAGTACACCGAACTAAGAGCTCTGAACTCTCGAAACCAGCCACACGTGTCCAATTCTAATAACGTgggatacaaaataaaaagtgaaaaccaCGAGCAGTCCTGCATGATGGTGAACGACTACGCGGGCCATTATTAtggacagcagcagcagcaacagcaccAGGCTTATCACGTGCAACAAGACGTGTCTCGGGACATTTTAGGGAGGAAAGACTGCGTCCTAACAGAGATGAACTCTCACCATCATGTTGACATTGCACACCAACAGCAGTTCATGAACGGCGCGTCTTTTCCACCTCAGTACACCCAGCACCAACAGTATCACGGACATTACAACATGTTCAGCGAACCATTGCGGGCGAATCACCCGGCCATGCCAGGTGTGATGCTGACCCCGCCATCCTCGCCCCTCCTGGGATTTTTAAACCCAGAAGACAGCAAGCCGAAACGAGGGCGTCGGTCGTGGGCGCGAAAGCGGACGGCGACGCACAGCTGCGAGTTCCCCGGATGTGGGAAAACGTACACGAAAAGCTCCCATTTGAAAGCTCACATGCGGACGCACACAGGTGAGAAGCCCTACCACTGCAGCTGGGAAGGCTGCGGCTGGAAGTTCGCCAGGTCAGACGAGTTGACGCGTCACTACCGGAAACACACCGGACACAGGCCGTTTCAGTGCCACCTGTGCGAGAGGGCTTTCTCCCGTTCAGATCATCTGGCTCTGCATATGAAAAGGCACATGTAAAaataagagagaaagaaagagactatatgtattttaaaggaTGAAAggattttatattgttaagacAATTCCTATTTTGGGACAGCAGTTATATGTGAATAGCAGTATCAtgtcatttgatttaaattatgaCAGTATTTAATAGAAGGAGATTCTTGTTCATTTAGAAGGTAAATTATGTAGTACTTTCACAGATGTATAAAAACGGGGCAGGACCCAaacttgtgtatatattttttttattctccatttatacatttgtattaagtcagggagtatttttttttcctcagaagaATTAAAagcattgtctttttttgtata

Function

symbol description
klf17 Enables DNA binding activity. Acts upstream of or within several processes, including erythrocyte differentiation; hatching gland development; and regulation of gene expression. Predicted to be located in nucleus. Is expressed in several structures, including ectoderm; germ ring; hematopoietic system; lateral line system; and mesoderm. Orthologous to several human genes including KLF2 (Kruppel like factor 2).

NR:

description
Krueppel-like factor 4

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0048785 hatching gland development biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0035188 hatching biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253230.1 True 1639 mRNA 0.48 3 15516806 15518976

Neighbor

gene id symbol gene type direction distance location
rnf220a rnf220a,LOC107700999,LOC107657453,LOC107739829,LOC107557077,LOC106599374,LOC107599891,LOC107730793 coding upstream 44056 15360754 ~ 15472750 (+)
tmem53 tmem53,LOC107730786,LOC107733878,LOC107700979,LOC107599888,LOC107657452 coding upstream 247310 15267129 ~ 15269496 (+)
opn4.1 opn4.1,LOC107599887,LOC107733886,LOC107559015,LOC107730802,LOC107701002 coding upstream 250601 15261961 ~ 15266205 (+)
LOC122357442 LOC107599890,LOC107657450,LOC107733889,LOC107730803,LOC107701003 coding upstream 253892 15260575 ~ 15262914 (+)
si:dkey-154p10.3 si:dkey-154p10.3,LOC107733888,LOC107657449,LOC107701000,LOC107730804,LOC107557070,LOC107736657 coding upstream 256371 15256044 ~ 15260435 (+)
slc6a9 slc6a9,LOC107739827,LOC107657455,LOC107730788,LOC107700995,LOC107557089,LOC107599892 coding downstream 2072 15521048 ~ 15564330 (+)
zgc:113531 zgc:113531,LOC107739831,LOC107599893,LOC107657421,LOC107557127,LOC107730792,LOC107700978 coding downstream 61167 15580143 ~ 15585173 (+)
kiss1ra LOC107657423,LOC107599909,LOC107722062,LOC107700977,LOC107559038 coding downstream 175232 15694208 ~ 15705571 (+)
kif2c kif2c,LOC107599896,LOC107657458,LOC107720856,LOC107700992,LOC107558283 coding downstream 235599 15754575 ~ 15761754 (+)
klhl20 klhl20,LOC106569069 coding downstream 330108 15849084 ~ 15856755 (+)
LOC122357737 NA non-coding upstream 16492 15498524 ~ 15500314 (+)
G12321 prpf4ba,LOC107701001 non-coding upstream 263762 15252494 ~ 15253044 (+)
G12255 NA non-coding upstream 336552 15118457 ~ 15180254 (+)
G12273 NA non-coding upstream 365931 15148605 ~ 15150875 (+)
G12211 NA non-coding upstream 479800 15034929 ~ 15037006 (+)
G12419 NA non-coding downstream 157227 15676203 ~ 15678446 (+)
G12432 NA non-coding downstream 204110 15723086 ~ 15804921 (+)
LOC122356092 NA non-coding downstream 212843 15731819 ~ 15742798 (+)
G12451 NA non-coding downstream 291917 15810893 ~ 15811393 (+)
G12491 NA non-coding downstream 359158 15878134 ~ 15878404 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 267557 15241797 ~ 15249249 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 733829 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 763645 14746107 ~ 14753161 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 1337191 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 2642798 12867929 ~ 12874008 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 341203 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 748067 16267043 ~ 16268797 (+)
LOC122323293 NA other downstream 931156 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 1205638 16724614 ~ 16776351 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 1513163 17032139 ~ 17039903 (+)

Expression


Co-expression Network