gadd45bb (gadd45bb,LOC107738256,LOC107591447,LOC107706329,LOC107559165,LOC107659370,LOC107684432,LOC105906135)


Basic Information

Item Value
gene id gadd45bb
gene name gadd45bb,LOC107738256,LOC107591447,LOC107706329,LOC107559165,LOC107659370,LOC107684432,LOC105906135
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17145373 ~ 17147065 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253285.1
AGATTCAAGTCAAACACGAGTCGAGACAGTACCGTACGGACGAGTATCTGAGCAGTGAGAAAGAGAAACCGCTCGAAATCTCTGTGGATTACTACTGCCGTCAAACATCGCCGTGTTCACTGGAATTATATTATTTGGAGGAAATTTCGATTTCTGgattacataatttaatgaCAAACATGACTCTGGAAGAAGTTGTTGGATGCAACAGCACTGACAGAAAaatgGAGACTGTACGCGAAGCTCTCGAGGAGCTGCTAGTAGCTGCACAACGACAAAACTGTCTGACGGTAGGAGTCTACGAGTCTGCACAGCTTATGAATGTGGATCCGGACAGCGTGGTCCTCTGCGTTTTAGCGACCGATGAGGAGGACGAGAATGATGTCGCGCTTCAGATCCACTTCACGCTCATCCAAGCTTTCTGCTGCGACATCGACATCAACATCGTGCGCGTCTCCGGCATGAGGCGTTTGGCACAGGTACTCGGAGAGCCCGTGTCCGCCGACAGCAACGCTAACGAACCAAGAGACCTCCACTGCATACTTGTAACTAACCCACAGGCCGAGCATCTCAAGCTGAACGAAGTGGGGAGTTACTGCAAGGAAAGCCGCTGCAGGAACCAGTGGGTGCCCTCCATTGCCCTGCAAGAGCGCTGAGGTGTTCTGCACTGAAACGTGCCGAAGAGAACCGGAATATTGATGTGGTCCTTCAACCGTCATGAGGACATACTCATCAATTCAAAGGGACTGTCTAATAGTCCATTGAGGAGCTTCCACCTCCATGTTTCTGGAATTCTAAGCGTCAGAGGATACTAGAGACATTCGTCCACGTTCCTCTCAAATTGCATGATCGGTGGTGTCGCCCTTCGGAGGGATCAAAGGTGCACCGGGGTGGTCTGTGATGCAGCAAGGATGCTAGGGGATGGCGTATGGCCGCATTTTGCACTCCACGTGGGGGAGAATGATTAACACATGACTCAGACCTGACAATACTGAGATGGGTCTACAGAGGAAAAGAGAGGCTCTGCCTTAAAAAGAGACTGCTATTTAATGACTGAACCttaactgatttttatttatgcttaacACTGATGTCATTcacaacaaataatatatttggttatttatatatttacaaatgtttacttttttttttttcatgaaataaattttaTGCTTAATGATTTCAAACGA

Function

symbol description
gadd45bb Acts upstream of or within somitogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including margin; mesoderm; retina; solid lens vesicle; and yolk syncytial layer. Orthologous to human GADD45B (growth arrest and DNA damage inducible beta).

NR:

description
PREDICTED: growth arrest and DNA damage-inducible protein GADD45 beta-like

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253285.1 True 1193 mRNA 0.47 4 17145373 17147065

Neighbor

gene id symbol gene type direction distance location
rabgap1l2 rabgap1l2,LOC107706404,LOC107659372,LOC107684408,LOC107559133,LOC107591424,LOC107738216 coding upstream 17014 17124781 ~ 17128359 (+)
fam163aa si:dkey-193b15.8,LOC107591327,LOC107684409,LOC107738190,LOC107706402,LOC107557375,LOC107659374 coding upstream 22309 17109566 ~ 17123064 (+)
nrd1a nrdc,nrd1a,LOC107738192,LOC107684410,LOC107706405,LOC107659423,LOC105906141 coding upstream 39406 17094184 ~ 17105967 (+)
pdcd10b LOC107684411,LOC107557361,LOC105906142,LOC107706406,LOC108411198,LOC100709687 coding upstream 100600 17040002 ~ 17044773 (+)
ptx3b LOC107591444,LOC107738195,LOC107684438,LOC107659376,LOC107559106 coding upstream 115571 17025183 ~ 17029802 (+)
slc1a8b slc1a8b,LOC107591333,LOC107706395,LOC107557414,LOC107738183,LOC107659353,LOC108444332,LOC105889468 coding downstream 64811 17211876 ~ 17219198 (+)
pex19 pex19,LOC107591335,LOC107684402,LOC107659417,LOC107557446,LOC107738253 coding downstream 82815 17229880 ~ 17233863 (+)
copa copa,LOC107591337,LOC107684398,LOC107706393,LOC107659416,LOC107557408 coding downstream 86993 17234058 ~ 17244433 (+)
apoda.2 apoda.2,LOC107557457,LOC107706325,LOC107591449,LOC107684429,LOC107738179 coding downstream 100870 17247935 ~ 17249242 (+)
samd7 samd7,LOC107591340,LOC107557490 coding downstream 106167 17253232 ~ 17259748 (+)
G12823 map1sb,LOC107738188,LOC107659421,LOC107591330,LOC107684407,LOC107706295 non-coding upstream 10485 17133077 ~ 17134888 (+)
G12818 NA non-coding upstream 22006 17123139 ~ 17123367 (+)
G12782 NA non-coding upstream 166617 16950834 ~ 16978756 (+)
G12784 NA non-coding upstream 178271 16958408 ~ 16967102 (+)
G12776 NA non-coding upstream 188114 16936932 ~ 16957259 (+)
G12972 NA non-coding downstream 14111 17161176 ~ 17162972 (+)
G12975 NA non-coding downstream 35119 17182184 ~ 17270444 (+)
G12982 diras1b,LOC107659419,LOC107591332,LOC107557388,LOC107684404,LOC107738254,LOC108236225,LOC103373792 non-coding downstream 40052 17187117 ~ 17190607 (+)
G12985 NA non-coding downstream 57349 17204414 ~ 17206481 (+)
G12977 LOC107706390 non-coding downstream 125589 17272654 ~ 17273162 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other upstream 105470 17032139 ~ 17039903 (+)
LOC122361622 NA other upstream 369022 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 688841 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 876576 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 1269609 15860179 ~ 15875764 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 215180 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 419776 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 460187 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 632274 17779339 ~ 17782364 (+)
G13137 NA other downstream 637114 17784179 ~ 17816764 (+)

Expression


Co-expression Network