rnf182 (rnf182,LOC107686061,LOC107586260,LOC107751563,LOC107713969,LOC107579226)


Basic Information

Item Value
gene id rnf182
gene name rnf182,LOC107686061,LOC107586260,LOC107751563,LOC107713969,LOC107579226
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14836159 ~ 14836952 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253296.1
GCTTTGACTACAACCAGCCGATGAGAAAGCGTTGAGAAGAAGGAGACATGATGGGACAGTTCCCGGAGGATGTGGTGGGTGGCTTCACCGCAGAGGAACTGGAATGCAAGATCTGCTACTGCGCTTACAGCCTGTCAAGTCGACGGCCCAAGGTCCTCGAGTGCTGCCATTGTCTTTGTGCCAAGTGCCTTGCAAAAATCCTTGATTTAGGCGAATCCTCTCCAAACGCAGTGGTCTGTCCGTTCTGCCGCTACATCACAGATCTTCCCGGAGAAGACGTGGACAGTTTACCAGATGAGTATAACTTGGTGTCGGCACTGCTGTCCATCCAGACGCGGAAGCATCAGAGCCTCAACGACAACCGAGGCGAGATTCTCCTCAGTCCCAGGCACCTCAGCTCTCTGGTGGGACACTCCGCCTCCGCTTCTCCCACCTCCATTCGTTCCAATTATGTGGTGATCACCATTATGGAGCCTCGGCAGGAGTCTGTCATTCCAGCTCGGAGCAGGGATTACCGCTCTTCCAGCCAGGACTCCATGGCCTCGGTTACTCAGAGATGGACAGTGTGGAACTGCGCGGCCCTGCTGTGCCAGACTTCAGCACGCGTCCTGGTTTGGCTGCTGGGGATGCTGTACTTCAGCTCGCTGCCTCTAGGGGTCTATCTTCTAATCATGCAGAATACCAGGGTGGGGGTGATGTTGGTCAGTTTGGTACCTGTCAGTCTTCTCATCGTCATGGTGTACGGCCTTTGCCAATGCCTGTGCCGTGAGTTTTGGGACTGTGTACCACCGTAA

Function

symbol description
rnf182 Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Orthologous to human RNF182 (ring finger protein 182).

NR:

description
E3 ubiquitin-protein ligase RNF182

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11983 RNF182; E3 ubiquitin-protein ligase RNF182

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253296.1 True 794 mRNA 0.55 1 14836159 14836952

Neighbor

gene id symbol gene type direction distance location
si:ch211-106h4.12 NA coding upstream 60663 14773824 ~ 14775496 (+)
si:ch211-106h4.4 malrd1,LOC107713964,LOC107686070 coding upstream 90201 14726160 ~ 14745958 (+)
cacnb2b LOC107664070,LOC107751551,LOC107686054 coding upstream 126960 14682890 ~ 14709199 (+)
tmem236 tmem236,si:dkey-32m20.1,LOC107713979,LOC107686088,LOC107751554,LOC107664072 coding upstream 154827 14678449 ~ 14681332 (+)
stam stam,LOC107664071,LOC107556673,LOC107686052 coding upstream 158852 14669402 ~ 14677307 (+)
ranbp9 ranbp9,LOC107713984,LOC107556766,LOC107664064,LOC107686062,LOC107751564 coding downstream 1470 14838422 ~ 14849429 (+)
epdr1 epdr1,LOC107664036,LOC107558964,LOC108267170,LOC107713986 coding downstream 15748 14852700 ~ 14855171 (+)
stard3nl stard3nl,LOC107686094,LOC107713985,LOC107664037,LOC107751580 coding downstream 18877 14855829 ~ 14863508 (+)
otulinb LOC107713989,LOC107657417,LOC107718039,LOC107701026,LOC107556827 coding downstream 73923 14910875 ~ 14915309 (+)
ankhb ankhb,ankh,LOC107657429,LOC107713990,LOC107701025,LOC107718038,LOC108437249 coding downstream 81269 14918221 ~ 14932680 (+)
G12136 NA non-coding upstream 6673 14827051 ~ 14829486 (+)
G12135 fam134b,LOC107686060,LOC107664066,LOC107584095,LOC107751562,LOC107558208,LOC107713983 non-coding upstream 9214 14823161 ~ 14826945 (+)
G11918 LOC107664027,LOC107713977,LOC107584165,LOC107556660 non-coding upstream 198354 14637589 ~ 14637805 (+)
G11917 NA non-coding upstream 199390 14636444 ~ 14636769 (+)
G11914 NA non-coding upstream 232614 14559860 ~ 14603545 (+)
G12143 NA non-coding downstream 20420 14857372 ~ 14886069 (+)
G12144 NA non-coding downstream 29246 14866198 ~ 14878772 (+)
LOC122323195 NA non-coding downstream 102237 14939189 ~ 14982818 (+)
LOC122328201 NA non-coding downstream 188451 15025403 ~ 15026789 (+)
G12211 NA non-coding downstream 197977 15034929 ~ 15037006 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 53182 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 82998 14746107 ~ 14753161 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 656544 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1962151 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 2209772 12623823 ~ 12626387 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 404845 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1023227 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 1430091 16267043 ~ 16268797 (+)
LOC122323293 NA other downstream 1613180 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 1887662 16724614 ~ 16776351 (+)

Expression


Co-expression Network