LOC122355329 (cyp7a1,LOC107722516,LOC107693703,LOC107586715,LOC107691428,LOC107589909,LOC107718110)


Basic Information

Item Value
gene id LOC122355329
gene name cyp7a1,LOC107722516,LOC107693703,LOC107586715,LOC107691428,LOC107589909,LOC107718110
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10212891 ~ 10215867 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253491.1
CATGAGTGCATCTTCAAGGAATAAAGCCAAGCTCTAGTTCCACAAGTTTTTGTCTCCCCAGCAGTCATGATACTTAGCATCGCCCTCATTTGGGCTATAGTTGTTGCGCTCTGTTGTTGTCTTTGGCTTATCACAGGAATACGCAGAagACAGCCTGGGGAGCCTCCAGTAGAAAATGGCTGGATTCCTTACCTTGGTTGTGCTCTTCAGTTTGGTGCCAATCCTTTAGAGTTTCTTCGCAGCAGACAGAAAAAACATGGtcacatttttacatgcaaGATCGCTGGGCAGTATGTCCATTTCCTTTGTGATCCGTTCTCCTACCACGCTGTTATCCGCCAAGGAAGGCACCTTGACTGGAAGAAATTTCACTTCGATGCCTCTGCAAAgGCATTTGGTCATGAGAGCATGGATCCCAGTCAAGGTTTCACCACCGAGAACCTGCATCAGACCTTCCTGAAGACCCTACAAGGGGAGGCCTTGTCTCCTCTCATTGAGACCATGATGGAAAACCTACAGAGCACCATGCTGCAGTCAGGCATCCTGAAGGCCAAAGCCTCCGAATGGCAGAACGATGGTATTTTTGCCTTCTGTTACAAGGTCATGTTTGAAGCAGGCTACCTGACCCTCTTTGGAAAGGAACTGGACGGAGACCAGAGCATTGCACGTCAGCAGGCCCAAAAAGCTCTGGTGCTCAATGCATTGGAGAACTTCAAAGAGTTTGATAAGATCTTCCCTGCTCTGATCGCTGGTCTCCCCATTCATGTTTTCAAAAGCGCCTACAGCGCTCGCGAAAATCTCGCCAAGACAATGCTCCACGAGAACCTCAGCAAGCGTGCAAATGTGTCTGACCTCATATGCTTACGCATGCTCTTGAATGACACATTATCTACCTTCAACGAGCTCAGCAAAGCCAGGACCCATGTGGCCATGCTGTGGGCTTCACAAGCCAACACTTTGCCTGCAACCTTCTGGACCCTGTTCCATATGATCAGGTGCCCTGCGGCTATGAAAGCTGCTGGCGAGGAGGTGAGGCGAACATTTGAAAGCTCTTACCAGAAAGTCGATCCCATGAATTCTCGACTTGTACTAACAAGGGAACAGTTGGACAACATGCCAATTCTAGACAGTATCATTAAAGAGGCTATGAGGCTGTCCAGCGCGTCCCTGAATGTGAGGATGGCCAAAAGCAATTTTCTTCTTCACCTGGACAACAACGAGTCTTATCACATCCGCAAAGACGATGTAATAGCTCTGTACCCTCCGATGATTCACTTTGATCCTGAGATCTATGAAAATCCTCTGGCATTTAAGTATGATAGATACCTTGACGAGAATGGACAGGAGAAGACCAGCTTTTACCGAGACGGGCGAAGACTTCGTTACTACTACATGCCGTTCGGCTCTGGGGTGACCAAGTGTCCTGGACGCTTCTTTGCTGTGCACGAGATCAAGCAGTTCCTGTCTCTGCTGCTAGCGTACTTTGAAATGGAGCTTTTAGACCCTGATGTGAAAGAACCGCCTCTGGACCAGTCTCGAGCCGGACTGGGTGTTTTGCAGCCCACCTATGATGTTGACTTCCGATACAGGCTCAAATCCCACTAGGAGTCGCACACCTATTTATGGACTGTTGTCTTAAGctgtaaataatgtacattttgcaTCGCGTCCAAGCAGACAAATGTGAATAGGTttcaattttgttttctttctattcAAGTTGATTTGAGAGAGATGTTACTAAGTTTGAAAGAAACTTCAGAGAtcgtcttttaaaaacaattcagtaACATTTACTGCACTTATcctatgtttatttttcttctcaaTTCTTATCATATCTGGCAGTATTCAATATACGATATTGAATATATGTTAGAAATTGTAATCACTTTCTAACATCACTTGTCCTATTTTCATTtgccatttttgtaaaatgatgtGCTTCGTAATTGCAAGTGAATTTTACTTACAAAAGGTGCTTGAAGGTGCTGTAAGCAATTTTATATggaattaaaagcaaaaaaacccaa

Function

symbol description
cyp7a1 Predicted to enable steroid hydroxylase activity. Predicted to be involved in bile acid biosynthetic process and cholesterol homeostasis. Predicted to act upstream of or within cellular response to glucose stimulus and cholesterol catabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; central nervous system; otic vesicle; and retinal ganglion cell layer. Orthologous to human CYP7A1 (cytochrome P450 family 7 subfamily A member 1).

NR:

description
PREDICTED: cholesterol 7-alpha-monooxygenase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00489 CYP7A1; cholesterol 7alpha-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253491.1 True 2033 mRNA 0.45 6 10212891 10215867

Neighbor

gene id symbol gene type direction distance location
fam110b fam110b,LOC107585622,LOC107722620,LOC107693712,LOC107691438,LOC107589841,LOC107718111 coding upstream 14615 10168240 ~ 10198276 (+)
gtf2b gtf2b,LOC107693714,LOC107585659,LOC107718116 coding upstream 92952 10114573 ~ 10119939 (+)
znf644a LOC107722621,LOC107693692,LOC107589847,LOC107586139 coding upstream 105467 10096409 ~ 10107424 (+)
cldn18 LOC107722530,LOC107693705,LOC107718157,LOC107586152,LOC107589887 coding upstream 132946 10078400 ~ 10079945 (+)
LOC122324805 LOC107695158,LOC107722506,LOC107586159,LOC107691708 coding upstream 135557 10075157 ~ 10077334 (+)
rab2a rab2a coding downstream 109191 10325058 ~ 10336681 (+)
chd7 chd7,LOC107722533,LOC107718105,LOC107689390,LOC107589837,LOC107585562,LOC107688517 coding downstream 121656 10337523 ~ 10378222 (+)
c2h7orf25 zgc:55781,cunh7orf25,LOC107689392,LOC107722560,LOC107718178,LOC107589835,LOC107585545 coding downstream 206869 10422736 ~ 10425446 (+)
ralab ralab,rala,LOC107585502,LOC107718103 coding downstream 210052 10425919 ~ 10446802 (+)
plcd1b LOC107688433,LOC107722543,LOC107585437 coding downstream 278234 10494101 ~ 10506040 (+)
G10883 NA non-coding upstream 3040 10209563 ~ 10209851 (+)
G10838 NA non-coding upstream 70920 10141342 ~ 10141971 (+)
G10819 NA non-coding upstream 149077 10058532 ~ 10063814 (+)
G10753 NA non-coding upstream 197069 10014559 ~ 10015822 (+)
G10752 NA non-coding upstream 198525 10011937 ~ 10014366 (+)
G10902 NA non-coding downstream 175802 10391669 ~ 10391956 (+)
G10903 NA non-coding downstream 176826 10392693 ~ 10393150 (+)
G10901 NA non-coding downstream 206070 10421937 ~ 10539990 (+)
G10914 afg3l2,LOC107718155,LOC107688430,LOC107589831 non-coding downstream 229314 10445181 ~ 10482952 (+)
G10918 inhbab,LOC107718177,LOC107589832 non-coding downstream 254254 10470121 ~ 10475283 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other upstream 51082 10158532 ~ 10161809 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 296030 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 461679 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 1040976 9162611 ~ 9171915 (+)
G10212 NA other upstream 2105114 8106865 ~ 8107777 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 446862 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 495263 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 903987 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 1013893 11229760 ~ 11264234 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other downstream 1087811 11303678 ~ 11338469 (+)

Expression


Co-expression Network