prrx1a (prrx1a,LOC107693734,LOC107722649,LOC107564708,LOC107589863,LOC107718131,LOC107691682)


Basic Information

Item Value
gene id prrx1a
gene name prrx1a,LOC107693734,LOC107722649,LOC107564708,LOC107589863,LOC107718131,LOC107691682
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9851285 ~ 9856761 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253543.1
AATTAGGGCTCCTTGTGCGTCTATCATCCCTCCCCAGGGCTTGCTCTCAGGCTCCCCCCTCAGCGCCGGTGCGCGTCGTTTGAAGTAGCGGAGAAAGACGCGGAGAGAAGCTCGTCTGACCTCCTACTATTGGGCGTAAGTCGTTCATCTGTGCCATCAAACCTCTCTCGCCAGCTTACTCATTCCCTCACTCACGGAGCGAGAGGGGAAGTCTCTGTTACAGAAACCGAGAGGGAGTCATCGGGCAAAAGGCGAAAACTTTGGACTTCTCGAACCGGAGATGCGTTTCGGTGATGCCCCTTTTCCATAAAGTCCAGTAAAAGAACGGCAGCTGTTTGGATCCACGTGAACCACGGATGAAGAAATCAATATCGATCTTTTTGTCGAGCGCAGAGTGATTGTTTACGGTCCACACTTAACCCATGTTGGTTATAGGTAGAGGATATCTTGGGTTTCGTCAGTTTGCGTCATGACTTCAGGCTATGCTCATGTAATGGACAGACAAGCCCCGCTGCCTAACCGACTGGAGAGCCCGATCACCGCCAATCAGGATCATTTACAGGCGAAGAAGAACTTCTCCGTGAGCCACCTGTTGGATCTGGAGGAGGCGCGGGAGATGGTGGGAGCTCAAGCGGAGGAGAGCGCGGGAGAGGCGGGCAGGAGCATGCTGGAGTCTCCGGGGCTGACCAGCGGCAGCGACACGACGCAGCAGGAGAATGAGCAGCTCAACTCGGAGGAGAAGAAAAAGCGTAAACAGAGGCGGAATAGGACCACGTTCAACAGCAGCCAACTGCAGGCCTTGGAGAGAGTGTTTGAGAGGACGCACTACCCAGACGCTTTTGTCAGGGAGGACTTAGCACGCCGGGTCAACCTCACTGAAGCTCGCGTGCAGGTGTGGTTTCAAAATCGGCGAGCTAAGTTTCGGCGAAACGAGCGTGCGATGCTGGCCAGTAAAAATGCCTCGTTGCTCAAGTCTTTCTCAGGAGAAGTAACAGCCGTAGAGCAGCCCATAGTCCCACGACCCGCTCCCAGACCCAACGACTACCTGTCCTGGGGCAACTCGCCATCGTACAGCGCCATGGCAACTTATTCTCCATCATGCGCTACCAACAACACAGCCCAGGGCATGAACATGGCCAACAGCATCGCCAACCTGAGACTGAAGGCCAAAGAATACAGCCTGAACCAGGTACCCACCGTCAACTGAAGCGGACAGCAGGGCTGTCAGAGACTCACGTCAGAGAACAATCCCGACATCCCAACCGAACCGGCTCCGTTCTATTGACGTAACACTTGTTTTCTGTCCTCTTATATGTCTTTTACTCTTACCCATCGAGAAAATGAAGCGAAGGAGAATTTCCTCAAGGTACAGAGCTTTCCTAAACCAATGATTTACATAAGGCTGTCATGTTCATGGCATGTGGGAAAATGACATGTGGGAAAATTCAGTTTTGGAAAGCGCGAAATGGAAACTTTCTCTGTTCGCACTCACTGTGGCAGCATGAGTGTGGTCATCCCGTATGAAGACCGTGGCTTACTATAGATTGCTTTCCCGAGACCGTTGCTGACCACAGGGATTTGATGACCTCTGCGGAATCCATACAACTACAATCTTGTGGACATCTGGGAAGTTTTTAGGATTTCCCCTTGATTTCTCCTTGGAACTCATAAATATGCACTGAGGCCACAAATTGGGATTTggatattttgattatttggaGCCGGGTGAAGTCTGGCTTCCTTGTTACCGTACTCTAAAAATCACTCCTTgctgttttcagtttaaaacaTGCCGGggttatttgttcattttggcATATACAGAACTCTAGCCATGTATGTAAGCGAATTTGGAGCCTAGTTGATTTTACCCTTTTATATTGTCTATATCTAAACATGTAATATTCCTTTGCAATAAAGATGTCCAAGCAGTGTAACAGCATTGCGTTTCAGG

Function

symbol description
prrx1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including atrial cardiac muscle cell action potential; epithelial to mesenchymal transition; and heart looping. Predicted to be active in nucleus. Is expressed in several structures, including cranial vault; fin; gill; mesenchyme; and mesoderm. Human ortholog(s) of this gene implicated in agnathia-otocephaly complex. Orthologous to human PRRX1 (paired related homeobox 1).

NR:

description
PREDICTED: paired mesoderm homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09329 PRRX, PMX; paired mesoderm homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253543.1 True 1954 mRNA 0.50 4 9851285 9856761

Neighbor

gene id symbol gene type direction distance location
niban1b LOC107722650,LOC107693736,LOC107564706,LOC107718132,LOC107677773,LOC107589866 coding upstream 45595 9781765 ~ 9805690 (+)
ivns1abpb ivns1abpb,LOC107722586,LOC107693739,LOC107718136,LOC107589867,LOC107677749 coding upstream 84959 9758179 ~ 9766326 (+)
pla2g4aa pla2g4aa,LOC107722605,LOC107693742,LOC107718137,LOC107677770,LOC107594671,LOC107589895 coding upstream 106177 9731529 ~ 9745108 (+)
odr4 c2h1orf27,LOC107693744,LOC107722540,LOC107718140,LOC107589896 coding upstream 141434 9702238 ~ 9709851 (+)
prg4a LOC107594674,LOC107722510,LOC107693698,LOC107589871,LOC107677759 coding upstream 169316 9676255 ~ 9681969 (+)
mllt1b LOC107722626,LOC107718125,LOC107564713,LOC107691596,LOC107589857 coding downstream 60570 9917331 ~ 9927244 (+)
sap130b sap130,sap130b,LOC107693727,LOC107691745,LOC107589892,LOC107722618 coding downstream 71665 9928426 ~ 9940747 (+)
myo7bb LOC107693708,LOC107722614,LOC107564725,LOC107589856,LOC107691586 coding downstream 86100 9942861 ~ 9961475 (+)
agxtb agxtb,LOC107722583,LOC107718120,LOC107693722,LOC107691560,LOC107585700,LOC105899541,LOC103036651,LOC108432502 coding downstream 179778 10036539 ~ 10040853 (+)
thap4 thap4,LOC107586721,LOC107693706,LOC107589912,LOC107691505 coding downstream 190087 10046848 ~ 10049106 (+)
G10674 kifap3b,LOC107693735,LOC107564707,LOC107722509,LOC107718166 non-coding upstream 25065 9825615 ~ 9826220 (+)
G10604 NA non-coding upstream 247442 9602366 ~ 9603843 (+)
G10581 LOC107722512,LOC107693701,LOC107594678 non-coding upstream 273879 9577171 ~ 9577406 (+)
G10571 NA non-coding upstream 278492 9486177 ~ 9572793 (+)
G10557 NA non-coding upstream 396540 9454366 ~ 9454745 (+)
G10738 NA non-coding downstream 132382 9989143 ~ 10010746 (+)
G10749 NA non-coding downstream 136023 9992784 ~ 9993395 (+)
G10752 NA non-coding downstream 155176 10011937 ~ 10014366 (+)
G10753 NA non-coding downstream 157798 10014559 ~ 10015822 (+)
G10819 NA non-coding downstream 201771 10058532 ~ 10063814 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 100073 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 679370 9162611 ~ 9171915 (+)
G10212 NA other upstream 1743508 8106865 ~ 8107777 (+)
G10108 NA other upstream 2268900 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 2551184 7285670 ~ 7300101 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 54867 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 301771 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 805968 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 854369 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 1263093 11119854 ~ 11135991 (+)

Expression


Co-expression Network