rabggtb (rabggtb,LOC107584851,LOC107732517,LOC107576861)


Basic Information

Item Value
gene id rabggtb
gene name rabggtb,LOC107584851,LOC107732517,LOC107576861
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12261916 ~ 12266122 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253555.1
GTAGAAACGGCGAAGAGCGTGATgatgtaatatgtgtgtgacTGGTGAAGTCAGCCTGTAGTCCACTCTCTTGTTTCTCCGTCAGGATGgGGACCCAGGTTAAAGACGTTATCATTAAACCTGATGCTCCAAACACGCTCATCCTAGACAAGCATGCAGATTATATTGCAGCCTATGGCTCCAAGAAAGATGACTATGAGTACACGCTGTCAGAGTACTTGAGAATGAGTGGCATCTACTGGGGTCTGACAGTGATGGATCTGATGGGTCAGCTGTCTCGAATGAACCGCGAGGAGATCATAGAGTTCATCACGTCTTGCCAGCATGACTGTGGAGGCATCAGCGCCAGCATTGGCCATGACCCTCATCTCCTCTACACCCTCAGTGCTGTACAGATCCTGTCGTTGTATGATAGCGTTAATGTCATTGATGTGGACAAAGTGGTGGACTATGTTAAAGGACTGCAGCAGGAGGACGGCTCATTCGCCGGAGACAAATGGGGAGAAATAGACACACGGTTTTCCTTTTGTGCGGTTGCGACATTGGCACTACTGGGCAAGTTGAATGAGATCAACGTGGACAAGGCTGTTGAGTTTGTGCTGTCCTGTATGAACTTCGATGGTGGGTTTGGTTGTAGGCCTGGTTCAGAGTCCCATGCTGGCCAGATTTACTGCTGCACAGGTTTCTTATCGGTCACTGGGCAGCTTCATCAAGTAAATGCAGATCTGTTGGGTTGGTGGCTCTGTGAAAGACAGTTACCATCGGGGGGCTTGAATGGGAGACCAGAGAAGCTGCCTGATGTCTGCTATTCCTGGTGGGTTCTTGCCTCTTTGAAGATCATTGGCAGAATTCACTGGATTGACAAAGCAAAACTGCGCAGTTTCATTCTCGCTTGCCAGGATGAAGAGACTGGAGGCTTCGCTGACAGGCCTGGAGACATGGTGGATCCTTTCCACACTCTGTTCGGTGTGGCTGGTCTGTCTTTGCTGGGAGATGAGCAGATCAAACCAGTGAATCCTGTGTTTTGCATGCCTGAGGATGTGCTTCAGAGGATCGGCCTCCAACCGGACTTGCTGAGTTGAAATCTTCAGCATGGCCTTTTTCCTCTTCTCCTACCCCTGCACAGCCGGCCGTTTGGAAACGGGCAAACCAGCAAACCGTGGAAAGCTGTCATCTTCAACTAATGATCAGTGCACCATTTAGAGGGACCAAGGACTTTAGAAAGGCCCTTAACATTGTGTGCTTTTTTGCGGGAGAATTGTTCTCATCATTGTGTAGGCACAATAGTACAATGCTTACTTTTGTTAGTGGGCTTTCTCTATTTAAAGATGCGGCTCAAAGAGGAATATCTGCTATTTACAGCTTTCACTGTGTATTAAAACATAACTATTTATATGACTAATTCAGCAGGTCACTTTTGGTGTCaaccaaaagtgttttttcaaTGAGGAGAGAGGTTGCTCACTCATCTCTGATGGCTTTTCCAAAGCTAGTACGCGAGACTAATACATGTATGTTATATCAGACTTCAAGCACCATAAACATGGATTTCATGCATGAGATTAATTTTGATGTCCTCTTACTGTCGTTTGTTCACATCAAGTCCTCACTTctctaaagcatttattgtgcaaccattttaaaagtcatgctCTGCAACTGCTGTCATTTCTAAGGTTTGGGAGAGTTTTGCTTTTGTGGTATGAATGAAATCTCTCACTCGGCATTGACACCAGTGTGTAAAGATGCCTGTTGTTTGGGAGTGaataaatgtgactttaatATAA

Function

symbol description
rabggtb Predicted to enable metal ion binding activity and prenyltransferase activity. Predicted to contribute to Rab geranylgeranyltransferase activity. Predicted to be involved in protein geranylgeranylation. Predicted to be part of Rab-protein geranylgeranyltransferase complex. Is expressed in female organism. Orthologous to human RABGGTB (Rab geranylgeranyltransferase subunit beta).

NR:

description
geranylgeranyl transferase type-2 subunit beta

GO:

id name namespace
GO:0018344 protein geranylgeranylation biological_process
GO:0004663 Rab geranylgeranyltransferase activity molecular_function

KEGG:

id description
K05956 RABGGTB; geranylgeranyl transferase type-2 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253555.1 True 1787 mRNA 0.46 9 12261916 12266122

Neighbor

gene id symbol gene type direction distance location
cldn11a cldn11a,LOC107586547,LOC107732506,LOC107550596 coding downstream 167335 12092365 ~ 12094581 (-)
ghsra LOC107586567,LOC107722546,LOC107688542,LOC107732507,LOC107550603,LOC107680230 coding downstream 357958 11901080 ~ 11903958 (-)
nceh1a nceh1a,LOC107709885,LOC107722613,LOC107688490,LOC107584973,LOC107550609,LOC107680241 coding downstream 567438 11691551 ~ 11694478 (-)
pccb pccb,LOC107688488,LOC107722577,LOC107709888,LOC107680238,LOC106574468 coding downstream 576857 11679913 ~ 11685059 (-)
slc35g2a slc35g2a,LOC107709891,LOC107550608,LOC107680231,LOC107586575,LOC107688541,LOC107722521 coding downstream 630116 11628145 ~ 11631800 (-)
acadm acadm,LOC107688505,LOC107584839,LOC107674066,LOC107602542 coding upstream 963 12267085 ~ 12270472 (-)
best4 best4,LOC107729385,LOC107674419,LOC107714835,LOC107602543 coding upstream 15960 12282082 ~ 12286011 (-)
si:ch211-106k21.5 si:ch211-106k21.5,LOC107688547,LOC107729472,LOC107714834,LOC107674086,LOC107602518 coding upstream 21303 12287425 ~ 12292955 (-)
LOC122328397 LOC107688509,LOC107729466,LOC107714866,LOC107674362,LOC107602512 coding upstream 27226 12293348 ~ 12319104 (-)
ndc1 ndc1,LOC107674092,LOC107602511,LOC107584806,LOC107688508 coding upstream 53548 12319670 ~ 12327438 (-)
G11429 NA non-coding downstream 225487 12035009 ~ 12036429 (-)
G11425 slc2a2,LOC107586013,LOC107722632,LOC107680265,LOC107550598 non-coding downstream 228836 11943133 ~ 12033080 (-)
G11426 NA non-coding downstream 230191 12028135 ~ 12031725 (-)
G11366 NA non-coding downstream 442117 11817020 ~ 11819799 (-)
G11350 NA non-coding downstream 479515 11780111 ~ 11782401 (-)
G11549 NA non-coding upstream 5621 12271743 ~ 12272390 (-)
G11551 LOC107657932,LOC107700454,LOC107585903,LOC105895027,LOC107549844,LOC107743876,LOC107710907,LOC107579213 non-coding upstream 13636 12279758 ~ 12281210 (-)
G11565 NA non-coding upstream 73154 12339276 ~ 12359064 (-)
G11572 NA non-coding upstream 86357 12352479 ~ 12353826 (-)
G11561 NA non-coding upstream 95529 12361651 ~ 12366865 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 646978 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 684400 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 808713 11447089 ~ 11453203 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other downstream 816803 11440990 ~ 11445113 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 856216 11379243 ~ 11405700 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other upstream 523402 12789524 ~ 12838093 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other upstream 1049107 13315229 ~ 13470263 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other upstream 1287651 13553773 ~ 13564365 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 2312873 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 2854465 15120587 ~ 15127491 (-)

Expression


Co-expression Network