LOC122355454 (cyp7b1,LOC107749124,LOC107659553,LOC107602637,LOC107566988,LOC107690180,LOC107721742)


Basic Information

Item Value
gene id LOC122355454
gene name cyp7b1,LOC107749124,LOC107659553,LOC107602637,LOC107566988,LOC107690180,LOC107721742
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20549943 ~ 20555995 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253782.1
CCTTAGAAAAGCTTGAATGGGCCAAGTAGGTTAGTAATACAAACGAGTAGCTGTTGAGCAATGTTTAACTTTGAGCGACATAAGCTGGGCGTGACTTTCTGAAAATCTCCTCATTTCTCCCGTTGGACTGCGGTGTTTAATTTGTGATGATAAgcactttttcacttttaaacagTCGCAAACCTGGACGTGTCGCGTGCTTCATAAAGCCAATTTTCCTCCTCGCCAGTCTTAGGTTTCAGAGGCTCTTTGATAATGTTGGAGTGTTTATTGACGATCCTTCTGGGTTTCATCTCAGTGCTTCTGTTCTGGGCTTTTTGCGGACGCAGGAGGAAGGACGACGAACCTCCGCTGATTAAAGGTTGGATTCCATTCCTGGGGAAAGCTTTGGAATTCAGAAAAAACTCTCAGCAGTTTCTTACACAACTGCAACAGGAGCATGGagatgtttttactgtacttatAGCAGGAAGGTACATAACATTCATAATGAACCCTCTCCTGTACCCGTCTGTCATCAAACATGGAAAACAGCTGGATTTCCACACGTTTTCAGACAGCGCCGCGTCCAGGACATTCGGTTACCCACCGGTTCAGAGCGGCCTCTTCCCTGGACTGAGTGATAGCATCCAGCGGAGTTACACTCTGCTGCAGGGGCCCGCCCTCGACCCGCTCACGTTCAGCATGATGGGAAACTTACAGCATGTCCTGCGGCGCTACTTTCTGCCCGGTGGAGAGTCTAGGTCTGATGGCGATTGGCAAGAGACGGAACTATATGAGTTCTGTAAATGCGTAATGTTTCAGACTACATTTAACACTCTATACGGACATTCGTCAAATCTTCGTCTGGATCAGCTACGAGAGGACTTTGAGAAGTTTGATTCCATTTTTCCCTTGCTTATGGCCCGTTTTCCCATCGCCTTGTTGGGGAAAACCAAAGAAATTCGTGAGAAGCTGACAAGATTTTTCTATCCTCAAAGAATGGCAGAATGGAGGGCCCCATGCGAGTTCATACAGACACGAACGGCCATGTTCCAGGAGTTTGACACGCTTCAGGACAGAGATAAAGCAGCACATCATTTTGCCATGCTGTGGGCATCAGTGGGAAACACTATCCCAGCAGCCTTCTGGTGTCTTTACCACCTCATATCCTGCCCAGAAGCCCTTGAAGCAGTGAGAGCAGAAATTGTTGAAGTAGTTGGAGAGAAGAACATGCAGTTGGTCTTTGAAGAAGACATTACAATTACACGACAACAGCTAGAACAGATGATTCACCTGGAGAGTTCAATAAATGAGAGTTTACGTCTCTCCTCTGTATCGATGAACATCCGTGTGGTTCAGGAAGATTTCCGTTTGCGTCTGGATGCCCAGCAGTCAATCAACCTGCGAAAAGATGACATTGTTGCTCTTTACCCGCAAACCACACACCTTGACCCCGAAATATATGATCAGCCTGAGCGCTTCCAGTTTGACCGTTTCGTGGAAGATGGGAAggaaaaaacagatttttataaatgtggCCAGAAGGTCCGGTACTACCGTATGCCTTTCGGCTCTGGAGCCACGCAGTGTCCAGGGCGCTTTTTTGCATTGAATGAGCTGaagcagtttgtgtgtgtggctttGCTCATGTGTGAAATGCAGTTGCTGGAGAACCAGCAGGAGGCGATGCTAGACAACAGCCGCGCTGGTCTGGGCATCATGCCACCTGCTAATCAAGTCACTTTCAGATACAGAACCAGAAAACCAGGAGACGATATGAAGAGGGAGGAATGAACTAAATGAATGGAGAGACTGttgtttgttcattgtttggGTATTTTCTTTACGTTTATTCACAGGGTTGGTGCAaagattttgtaaataatgcaaGTTGAAGTATTCGTAAATAGCACTGCCATGGGAAAATCTCATCTTTGAATGAGCTAAACGTACAGATATACACTGCGGTTTGAATCAGGGTTGACTGTGAACAGCTTTCTATGTATATGCAACTGTGACATAAGGACAGCTTTTCAAACATCTTACCTCTCATAAATCAATTTTATCATATCAGTGGGTGTAAATAACAAGGGACCAGGAAATGATTACTCattgaatattaaaaagtaaatgtttctgctgttttgtttttttaacccttAGAAATGGTTATCCACAAAGTCATAAAATGTAGATTGAATAAacaaaattctgtttaaaagtatgggatcagtaagatttttttgatatgtttaagctgtaaaactgtgaaaaaaaaatacaatttaaaataacagtaaaattctattttaatgttatttatttctgtaatggcaaaactatattttttgcAGCGATCACCCGTGTTCAGTGTCGTGTGATTGTTCGAAAATCTGAAACACTATATTGCTTAAAGTTTTTATAGAAAGTAGTTAATTTTTCACAGGAgtctttaattaaaagttataaACAATGATTTGAAATTGAAAGAACAAAAGTCCTTACtgttatttttgatcaatttaattcatgcttgcttaaatattaataaaaaaaccttactgaccTCAAATCTGTGAATAGTACTGTACTCATTATTACTTAATGGGTACTGGTTGAGATTTCAGTTTTTACTAGtcagtatttcatatttaatcagtaaatattaaaaacttaattatgCATACTCATtaaccatttttgttttgataatgTCCTAGTAAATTTCAtctttacaatgtttttaaatggttagTTGTTCGTAATGTATGATCTTTAGCATATCTTACAATGAATATCCATTTACTTCAATACTATTACAGCGTATACTCTTGATAAACTCATGGGCAAGTTCAAATAGTTTGACACAGAAATCAGACAAAGGCATCATGGGACACTCAATACTTTACTGGAATGTTGGAGGGACAGCATGtgcaaaatgaacaaatgtaacTCGCTTCAATAGCTACTGTACAacactaacaaaaataaaacacctcCACATTCTCAA

Function

symbol description
cyp7b1 Predicted to enable steroid hydroxylase activity. Predicted to be involved in bile acid biosynthetic process and cholesterol homeostasis. Predicted to act upstream of or within cholesterol metabolic process. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital bile acid synthesis defect 3 and hereditary spastic paraplegia 5A. Orthologous to human CYP7B1 (cytochrome P450 family 7 subfamily B member 1).

NR:

description
PREDICTED: 25-hydroxycholesterol 7-alpha-hydroxylase-like isoform X1

GO: NA

KEGG:

id description
K07430 CYP7B; 25/26-hydroxycholesterol 7alpha-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253782.1 True 2992 mRNA 0.40 6 20549943 20555995

Neighbor

gene id symbol gene type direction distance location
LOC122355453 NA coding upstream 2440 20543826 ~ 20547503 (+)
LOC122358486 LOC107602635,LOC107566996,LOC107721759 coding upstream 10389 20537537 ~ 20539554 (+)
vcpip1 vcpip1,LOC107567007,LOC107721719,LOC107659314,LOC107690121,LOC107749097,LOC107602633 coding upstream 20937 20519909 ~ 20529006 (+)
odf3l2a zgc:110183,LOC107749223,LOC107602632,LOC107721708,LOC107588920,LOC107690329,LOC107678684 coding upstream 114521 20433469 ~ 20435422 (+)
acvr1l acvr1l,LOC107678695,LOC107749086,LOC107602619,LOC107721710,LOC107690001 coding upstream 246169 20294585 ~ 20303774 (+)
tmeff1a LOC107749138,LOC107602613,LOC107659611 coding downstream 6919 20562914 ~ 20567961 (+)
cavin4a murca,LOC107749140,LOC107602614,LOC107659646,LOC107690354,LOC107721748,LOC108428327 coding downstream 12462 20568457 ~ 20571921 (+)
ift57 ift57,LOC107659588,LOC107602615,LOC107566989,LOC107690362 coding downstream 16752 20572747 ~ 20577649 (+)
tmem71 tmem71,si:ch211-235o23.1,LOC107690185,LOC107749144,LOC107659711,LOC107566994 coding downstream 22431 20578426 ~ 20588575 (+)
LOC122360253 NA coding downstream 40337 20596332 ~ 20605933 (+)
G13896 NA non-coding upstream 17205 20532212 ~ 20532738 (+)
G13880 NA non-coding upstream 46604 20481017 ~ 20503339 (+)
G13851 LOC107721736 non-coding upstream 49993 20477963 ~ 20499950 (+)
G13863 NA non-coding downstream 35723 20591718 ~ 20595093 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding downstream 60163 20616158 ~ 20617660 (+)
G13964 NA non-coding downstream 343569 20899564 ~ 20946266 (+)
G13980 NA non-coding downstream 399940 20955935 ~ 20957136 (+)
G13976 NA non-coding downstream 405698 20961693 ~ 20966228 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 41552 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 64725 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 76419 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 120595 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2387801 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 607947 21163942 ~ 21164822 (+)
G14211 NA other downstream 751412 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 925139 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 977250 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 1158688 21714683 ~ 21716290 (+)

Expression


Co-expression Network