tmeff1a (LOC107749138,LOC107602613,LOC107659611)


Basic Information

Item Value
gene id tmeff1a
gene name LOC107749138,LOC107602613,LOC107659611
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20562914 ~ 20567961 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253796.1
TAAAGGCTAGCCTACCACaaatatagcaaataaaaaagtagGCTACTGTACGGTATTATATACAGACATAAGttcataaatttaaatataagggctattatatattacaatataagcCTATACGTTACGATAATTATAATGACATATtaagtataatttattcatgctgtCGCTAATGAAGCCTAAGTAACTAAATTGGCAAAGGAGAAAAATATTAAGGAAAGCACAGACTGCATCGTTTGAACTGTAGGCTATAGTTAGTTCGCTGTAGAGGTTTCACGTGACCATAGTCCATCTCGTGTTGTTGATGTGGAATCTTATATCTATCTCTCTCCGTTTCCCCTCCTTCCCTCTGTTTCCGAGTCCGTCTGCTTGTATCTTAGCGCAGATGAAAGGCAGTGAGGGAAACTGAGACGGTCTCTGCGCGAGCGGCACTATAGCATAATTGGAGCGCGTGAGCTGGCGTGATGCGTCTGAGGGTATCGGGTCACTGGCCCCTTCTATCAGCCGGACCGATGACAAGAAGAAATGAGCCACAGCGAGCGCAGCGTCAGCTTTCGTGTGAATGAACAATTCCGCGTCATTTGGCGTACCAGTCGCGCGGAATCCTCGTATTGAGCCGCATTATGTCCGGTGGCTCGTGCGCTGCGGGTGCCGGACGCTGTCTCGCGACGCTCGGGCTGCTGGTCCTCGTGCAGATGCCCGGGGCCCTGACGTCCGACGCGGAGAGCGATTGTTTGTCTGAAGACGACAAAGGATGCGAAGgtCTGTCTGAGAGGAAAGGTGACCTTCACGTGTGTGATGAATACAGTTGTTCGTTCGGAGGGATATGCAGGTACAACGGATCACACCTGGAGTGTCTTTGTCTGTATCAGTGTCCGCAGAGCTTTGCTCCAGTCTGTGGGTCCGATGGTAACACATACCATAGCGAATGTTTCCTAAGACAAGCTGCCTGTGAACAGCAGACCGCAATCACTGTAATTACAGAAGGACACTGTCACGCCGATGCTGAGTCGGCATCAGGAGATACAGatCTGGAGAATTCGGGACTGGAGCCCAGTAGATTTTCCAAGTGTTCTAGCTGCAGATTCGGAGCAGAGTGTGATGAAGACTCCGAAGGCATTTGgtgtgtgtgtaatatagaCTGCAGTGGATACAATTTGAATCCGGTGTGTGGATCGGATGGACTGTCTTACAGTAATCCATGTCAGATCAGAGAAGCATCCTGCTTGAAACAATCTCAGATTGATGTGAAATACCTTGGACAATGTccagATTCAGTGGATCTAGAGGGCGGAGTAACTGTGGGCGGAGCAATGCCCTGTGCTGAAATCAACAGCAGCTTTTGTCTGCATGGAACCTGTGAGATGAACAACGGCCTGGCAACTTGCAAGTGTGATCTGGGGTTCTCCGGTGTGCAGTGTGAGCGAAGGGACTTCAGTGAATTATACGTGGTGCCCAATGGACAGAAGCTTCAATACGTCCTGATTGCTGTAATCATCGCTGCTGTACAGATCAGCATCATCATCGCTATCATAATATGCATCACAAGGATTCATCCGAAAAAGCCACGAGGTCGTCTTCAGAAACAGAACCTGGGACACTTTCCCAAAGATGGAGGACGTATGATTGAATAGCTgctgattattttaatacaaacacaaaaaactgCACAACTATCtttttgactttagtatttcaGTGGCCTTATTTGACCCTatcaccttttttattttaaaatctctaCATTTCTCTACTTTTCTCTCCCCTTTTCttgccgtctctctctctctctctcactttcttaCTGGTCCAAATGCAGTAAATCCACATggtgaaatgtttatattagtaaattattacattttatgaacaAAATGTAAGCGAGTCTTGCCATACAAAACATCTTAGCATGATACTAGTGTTtgagtgtttgtatgtatatttttgagGAGACTGTTTGCTATAACTTTCATAAAGTATGAGATTTATGACTGGAGGACAATATAATGGCCCTAAAAATTCCATACATTTACACTGACTGAGGGCCCAGAATTATATCAACACTTTGTGGTGGACTTTTTAAACTTTGGCCAGtaagcaaccacccagaacaccatTAAAACCACAtagaaacatgcaaaaataaaaaaataaaccttccAGAAAGCTTTAGCAACTATATACTAAATACAATAGCTGGGGGTCAGAGGTTAAAGCAAAtcagaaaatatttgtaaaggCCATATTTACTATAGTTTGTTGTTTCCTATTCATACTTTGCCTTCTATCCACATTATATTTAACGTAAGAGCGGGTCTGGCCATTTTTAACGTGAATGTGCAAGGTTTCCGGTGTCAGACAACTCCAGTTTTTTACCTGTATAAAAAACAGTCCAATATGCTGCTTGATGTTACAAACcagtatttgttattatatgttttttaatgtattattgtaatCAGAAATTCACTGGTCTATTTACTGCACTTtgttattcttaattttttttttacacatagtGGCTAATATTGGAAGTCTCgcacattcacagaaaaaagtttacttttacttttacttaccACGTAGAAAAATAAAGTTgggaaaaacattaaataattttcattttgcaaacgTACAGCAGCACAATCTGAAAACCAAGTAAAACAAAGCCTTTTCCAGTTGAATCCCTCTAAAGCGGATTTTCATAATGTGTGACTGTCAAATTCTGTGCGTTTATCAGTCTTATAAAGTCTGTTTGTAAGTGACTTGCTTTTATAAGAAGGTCTGTATAATTTTGCATGTCAAATCTGTAAACTCAGCAGACATTTATAAAGTTGGTTTAAAAGAAAA

Function

NR:

description
tomoregulin-1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253796.1 True 2853 mRNA 0.41 9 20562914 20567961

Neighbor

gene id symbol gene type direction distance location
LOC122355454 cyp7b1,LOC107749124,LOC107659553,LOC107602637,LOC107566988,LOC107690180,LOC107721742 coding upstream 6919 20549943 ~ 20555995 (+)
LOC122355453 NA coding upstream 15411 20543826 ~ 20547503 (+)
LOC122358486 LOC107602635,LOC107566996,LOC107721759 coding upstream 23360 20537537 ~ 20539554 (+)
vcpip1 vcpip1,LOC107567007,LOC107721719,LOC107659314,LOC107690121,LOC107749097,LOC107602633 coding upstream 33908 20519909 ~ 20529006 (+)
odf3l2a zgc:110183,LOC107749223,LOC107602632,LOC107721708,LOC107588920,LOC107690329,LOC107678684 coding upstream 127492 20433469 ~ 20435422 (+)
cavin4a murca,LOC107749140,LOC107602614,LOC107659646,LOC107690354,LOC107721748,LOC108428327 coding downstream 496 20568457 ~ 20571921 (+)
ift57 ift57,LOC107659588,LOC107602615,LOC107566989,LOC107690362 coding downstream 4786 20572747 ~ 20577649 (+)
tmem71 tmem71,si:ch211-235o23.1,LOC107690185,LOC107749144,LOC107659711,LOC107566994 coding downstream 10465 20578426 ~ 20588575 (+)
LOC122360253 NA coding downstream 28371 20596332 ~ 20605933 (+)
march11 march11,LOC107659635,LOC107602618,LOC107749139,LOC107663337,LOC107721766 coding downstream 139003 20706964 ~ 20712152 (+)
G13896 NA non-coding upstream 30176 20532212 ~ 20532738 (+)
G13880 NA non-coding upstream 59575 20481017 ~ 20503339 (+)
G13851 LOC107721736 non-coding upstream 62964 20477963 ~ 20499950 (+)
G13863 NA non-coding downstream 23757 20591718 ~ 20595093 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding downstream 48197 20616158 ~ 20617660 (+)
G13964 NA non-coding downstream 331603 20899564 ~ 20946266 (+)
G13980 NA non-coding downstream 387974 20955935 ~ 20957136 (+)
G13976 NA non-coding downstream 393732 20961693 ~ 20966228 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 54523 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 77696 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 89390 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 133566 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2400772 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 595981 21163942 ~ 21164822 (+)
G14211 NA other downstream 739446 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 913173 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 965284 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 1146722 21714683 ~ 21716290 (+)

Expression


Co-expression Network