ube2wa (ube2w,LOC107585923,LOC108280505,LOC107751351,LOC107686032,LOC107664038,LOC108435722)


Basic Information

Item Value
gene id ube2wa
gene name ube2w,LOC107585923,LOC108280505,LOC107751351,LOC107686032,LOC107664038,LOC108435722
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14146033 ~ 14149244 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253839.1
GTGACACGTACCCCGGGGTTCGTCCAGTGTCCCCGCCGGTGCTAATCTGAACCCGGGGCGGTCGGCTGTTTCCTCTGTACGCacatttgtttactttgtaAGCTAACGTTCAGTCAGTCTGACGAGCCAGTAAACTCTGTGCTGTCACACCGCACACTGCTGTGGAGGTGGAAGAAGACACTTCCGAAGAGATGTGAAACGGGAATTATGCATCGGAGTCCTTCCGAACCCaAGCGATTACAAAAGGAATTGTTGGCATTGCAGAGCGACCCACCTCCGGGAATGACACTTAACGAGAGAAGTGTGCAGAACACGATCACTGAGTGGTTTATAGATATGGAAGGTGCTCCAGGTACTCTCTACGAAGGAGAGAAGTTTCAGCTCCTCTTCAAATTCAGTAGTCGATATCCTTTTGATTCACCTCAGGTAATGTTCACTGGAGAGAACATACCCGTCCATCCACATGTCTATAGCAACGGTCACATCTGTTTATCTATTTTAACGGAGGACTGGTCACCAGCTCTGTCTGTGCAATCTGTGTGTTTAAGCATTATTAGCATGCTCTCAAGCTGCAAAGAAAAGCGACGTCCTCCAGATAACTCCTTTTAtgttaaaacatgtaataaGAATCCAAAGAAAACCAAGTGGTGGTATCATGATGATACGTGCTAGTATCCAGatcattttgatatataaacagACTTTTCCAAGTACGTCAAGTACTTTATGATGCAGTCTTTGTGTTAAGACTGAACCAGCAGACCCTGGGATGGTGATTTATGTATGGATTAGGCGTACGCTTCTGCTGACTGgaaaaaagtgcttaaaaacGGCAGGAATGTAACCCACCCGGCAAGTATGTTCTGATGGAAGCAAGATGTggagctttttttcttttttttttttttgtatgtttgatttatgttgtattgttttctttcataagCCTCTATAGGTTTGCACCGATTGTGCAATAATAACTTCAATGTGGGTTTGGAATAAAAGGAAAGTCAGTGCAAATCAGAAAACCAGCTACTGTAATGGATCAATCATTAAAAGCAGAGACAGAAGTCTATCCTTGCTTGGTTATGCACTGTGAGATTCGAACAGGGCACATCTTTAcgtgtattttatgtaatatcttagctgtatattttaaaccatagtttcttttaaaatgtaagccaTTTTACGTTTAATATTGTAGCTGGGTGTGGTGTTTAGTACTATTCtgataaatgtcatatttacagATATGTACAAAATTAATGCAGGGTGTTGATCATATGACTTGATCTTAAAGGGTATCTGGAATTACACATGCTTTATGGGTTAGGATTTAAGCACTGCTTTTATAGATAGACCCCCATTTTGTGTAGTTAAAACAAGAGGTAACTTTACACATAATCACTTTATCTTTTATGTAAAGCTCTATctagtaatattaaaattgtcTGTTTGATTTCTTAATTTATCCTACTGCGCTGGGAAAGGTTCTTTTAAAAAGACGGCTTTTCCATGTCGTTAGCGTTAGAAGAAGTAAAGTTTGTCttcattgttttgttaaaactttatttaactttatttaaaagaaatgttcttattaaagtaatatattttgaaa
>XM_043253849.1
CATTGTTGCAAActgttaatgttgttgttgcatTGCGGTTCCGTGAAAAAACCCGATCAGACGTCATTCGGCCAATCGCCTCTCTACAGGGGCTTTCCATCATGGCGTCGATGCAGaAGCGATTACAAAAGGAATTGTTGGCATTGCAGAGCGACCCACCTCCGGGAATGACACTTAACGAGAGAAGTGTGCAGAACACGATCACTGAGTGGTTTATAGATATGGAAGGTGCTCCAGGTACTCTCTACGAAGGAGAGAAGTTTCAGCTCCTCTTCAAATTCAGTAGTCGATATCCTTTTGATTCACCTCAGGTAATGTTCACTGGAGAGAACATACCCGTCCATCCACATGTCTATAGCAACGGTCACATCTGTTTATCTATTTTAACGGAGGACTGGTCACCAGCTCTGTCTGTGCAATCTGTGTGTTTAAGCATTATTAGCATGCTCTCAAGCTGCAAAGAAAAGCGACGTCCTCCAGATAACTCCTTTTAtgttaaaacatgtaataaGAATCCAAAGAAAACCAAGTGGTGGTATCATGATGATACGTGCTAGTATCCAGatcattttgatatataaacagACTTTTCCAAGTACGTCAAGTACTTTATGATGCAGTCTTTGTGTTAAGACTGAACCAGCAGACCCTGGGATGGTGATTTATGTATGGATTAGGCGTACGCTTCTGCTGACTGgaaaaaagtgcttaaaaacGGCAGGAATGTAACCCACCCGGCAAGTATGTTCTGATGGAAGCAAGATGTggagctttttttcttttttttttttttgtatgtttgatttatgttgtattgttttctttcataagCCTCTATAGGTTTGCACCGATTGTGCAATAATAACTTCAATGTGGGTTTGGAATAAAAGGAAAGTCAGTGCAAATCAGAAAACCAGCTACTGTAATGGATCAATCATTAAAAGCAGAGACAGAAGTCTATCCTTGCTTGGTTATGCACTGTGAGATTCGAACAGGGCACATCTTTAcgtgtattttatgtaatatcttagctgtatattttaaaccatagtttcttttaaaatgtaagccaTTTTACGTTTAATATTGTAGCTGGGTGTGGTGTTTAGTACTATTCtgataaatgtcatatttacagATATGTACAAAATTAATGCAGGGTGTTGATCATATGACTTGATCTTAAAGGGTATCTGGAATTACACATGCTTTATGGGTTAGGATTTAAGCACTGCTTTTATAGATAGACCCCCATTTTGTGTAGTTAAAACAAGAGGTAACTTTACACATAATCACTTTATCTTTTATGTAAAGCTCTATctagtaatattaaaattgtcTGTTTGATTTCTTAATTTATCCTACTGCGCTGGGAAAGGTTCTTTTAAAAAGACGGCTTTTCCATGTCGTTAGCGTTAGAAGAAGTAAAGTTTGTCttcattgttttgttaaaactttatttaactttatttaaaagaaatgttcttattaaagtaatatattttgaaa
>XM_043253859.1
CCTTCCGAACCCGTAAATAATGaAGCGATTACAAAAGGAATTGTTGGCATTGCAGAGCGACCCACCTCCGGGAATGACACTTAACGAGAGAAGTGTGCAGAACACGATCACTGAGTGGTTTATAGATATGGAAGGTGCTCCAGGTACTCTCTACGAAGGAGAGAAGTTTCAGCTCCTCTTCAAATTCAGTAGTCGATATCCTTTTGATTCACCTCAGGTAATGTTCACTGGAGAGAACATACCCGTCCATCCACATGTCTATAGCAACGGTCACATCTGTTTATCTATTTTAACGGAGGACTGGTCACCAGCTCTGTCTGTGCAATCTGTGTGTTTAAGCATTATTAGCATGCTCTCAAGCTGCAAAGAAAAGCGACGTCCTCCAGATAACTCCTTTTAtgttaaaacatgtaataaGAATCCAAAGAAAACCAAGTGGTGGTATCATGATGATACGTGCTAGTATCCAGatcattttgatatataaacagACTTTTCCAAGTACGTCAAGTACTTTATGATGCAGTCTTTGTGTTAAGACTGAACCAGCAGACCCTGGGATGGTGATTTATGTATGGATTAGGCGTACGCTTCTGCTGACTGgaaaaaagtgcttaaaaacGGCAGGAATGTAACCCACCCGGCAAGTATGTTCTGATGGAAGCAAGATGTggagctttttttcttttttttttttttgtatgtttgatttatgttgtattgttttctttcataagCCTCTATAGGTTTGCACCGATTGTGCAATAATAACTTCAATGTGGGTTTGGAATAAAAGGAAAGTCAGTGCAAATCAGAAAACCAGCTACTGTAATGGATCAATCATTAAAAGCAGAGACAGAAGTCTATCCTTGCTTGGTTATGCACTGTGAGATTCGAACAGGGCACATCTTTAcgtgtattttatgtaatatcttagctgtatattttaaaccatagtttcttttaaaatgtaagccaTTTTACGTTTAATATTGTAGCTGGGTGTGGTGTTTAGTACTATTCtgataaatgtcatatttacagATATGTACAAAATTAATGCAGGGTGTTGATCATATGACTTGATCTTAAAGGGTATCTGGAATTACACATGCTTTATGGGTTAGGATTTAAGCACTGCTTTTATAGATAGACCCCCATTTTGTGTAGTTAAAACAAGAGGTAACTTTACACATAATCACTTTATCTTTTATGTAAAGCTCTATctagtaatattaaaattgtcTGTTTGATTTCTTAATTTATCCTACTGCGCTGGGAAAGGTTCTTTTAAAAAGACGGCTTTTCCATGTCGTTAGCGTTAGAAGAAGTAAAGTTTGTCttcattgttttgttaaaactttatttaactttatttaaaagaaatgttcttattaaagtaatatattttgaaa

Function

symbol description
ube2w Enables ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Involved in protein K11-linked ubiquitination and protein monoubiquitination. Predicted to be located in nucleoplasm. Predicted to be active in nucleus.

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 W

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0071218 cellular response to misfolded protein biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10688 UBE2W, UBC16; ubiquitin-conjugating enzyme E2 W

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253839.1 True 1624 mRNA 0.39 6 14146033 14149058
XM_043253849.1 False 1509 mRNA 0.37 6 14146033 14149244
XM_043253859.1 False 1415 mRNA 0.36 6 14146033 14148839

Neighbor

gene id symbol gene type direction distance location
rpl7 rpl7,LOC107584398,LOC107686030,LOC107664057,LOC107550715 coding downstream 6710 14136231 ~ 14139323 (-)
LOC122328947 NA coding downstream 7884 14138060 ~ 14138149 (-)
trpa1a trpa1a,LOC107550712,LOC107732569,LOC107664053,LOC107751364 coding downstream 32298 14105263 ~ 14113735 (-)
shhb shhb,LOC107586383,LOC107751367,LOC107686079,LOC107664041,LOC107732558,LOC107550703 coding downstream 62569 14077992 ~ 14083464 (-)
cnpy1 LOC107550718,LOC107686078,LOC107586387,LOC107751369 coding downstream 94400 14042928 ~ 14051633 (-)
elocb TCEB1,tceb1,tceb1b,LOC108426597 coding upstream 926 14150170 ~ 14151983 (-)
jph1b jph1b,jph1,LOC107746914,LOC107550709,LOC107686034,LOC107584332,LOC108435725,LOC108280498 coding upstream 9090 14158334 ~ 14179577 (-)
cbln2a cbln2a,cbln2,LOC107586364,LOC107686082,LOC107550708,LOC107664049 coding upstream 78983 14228227 ~ 14231611 (-)
ctnnd2b ctnnd2b,LOC107746909,LOC107686039,LOC107550705,LOC107664081,LOC107732586 coding upstream 125720 14274964 ~ 14342633 (-)
LOC122357171 LOC107556546,LOC107664084 coding upstream 196144 14345388 ~ 14348338 (-)
G11940 LOC107751355,LOC107686027,LOC107584387,LOC107550714,LOC107732566,LOC107664055 non-coding downstream 4176 14139482 ~ 14141857 (-)
G11958 NA non-coding downstream 41050 14101518 ~ 14104983 (-)
LOC122357571 NA non-coding downstream 115768 14016345 ~ 14030265 (-)
G11794 LOC101886882 non-coding downstream 353156 13748940 ~ 13792877 (-)
G11792 NA non-coding downstream 444722 13694319 ~ 13701311 (-)
G11966 NA non-coding upstream 39952 14189196 ~ 14189598 (-)
LOC122357595 NA non-coding upstream 41232 14190476 ~ 14191109 (-)
G11969 NA non-coding upstream 44331 14193575 ~ 14193812 (-)
G11982 NA non-coding upstream 99759 14249003 ~ 14250540 (-)
G12024 NA non-coding upstream 279667 14428911 ~ 14430054 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other downstream 581668 13553773 ~ 13564365 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other downstream 675770 13315229 ~ 13470263 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other downstream 1307940 12789524 ~ 12838093 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 2531095 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 2568517 11576391 ~ 11577516 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 429751 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 971343 15120587 ~ 15127491 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other upstream 984727 15133971 ~ 15153989 (-)
ccdc24 ccdc24,LOC107657456,LOC107599905 other upstream 1410419 15559663 ~ 15579706 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 2075479 16224723 ~ 16268835 (-)

Expression


Co-expression Network