kif2c (kif2c,LOC107599896,LOC107657458,LOC107720856,LOC107700992,LOC107558283)


Basic Information

Item Value
gene id kif2c
gene name kif2c,LOC107599896,LOC107657458,LOC107720856,LOC107700992,LOC107558283
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15754575 ~ 15761754 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254489.1
TTGAATGCAGAGCGGTTAATGTTGGTTTACGACTCATAGGGACAAAGTAGAAGAAAAATACTACTCTCAGTTTTGAGATAGAAACGTTGGCAAAAAATCTTGCAGTTTACAGACTATAATCTGAGATGGATCCTGCGTTGTCGAAGCTTCTTATCGGGCTCGCTGTCAATATAATTCGTAGTGATGGAAGGATCCACAGTGCCACTGTGAAAACTGTCAATGTCACTAAAGGTACAGTGAATGTGGAATGGTCTGAGAAGGACATCACGAAAGGAAAAGAGGTCGACATGGATGAGCTTAAGCAACTCAATTCTGACCTTATGCAACACGTTCAACCAAGCCGTCAAGAGGATTCTGAGTCCTCCCCTGGCCATTTCGCCGCACCTGTGTCAAAACCAGCAAAAAACGTCAGAGCATCAGTGCTTCCTTTAAGGTCGTCAAGAATACCTACTACTTCAGAACCTGCTCCTCTACATTGTTCTTCTGAAGAGCCAGCTTCTAGAAGGATGACCACACGTCAGACTTGCTTGTTCCGTCAGCCTGCCCCTCCACCTGTGGTCTCGGCAGTAGCTGCAGAGGAAGTTCTCTCTCACAATCTTCCATCATCTACAATCCCCAAAGCTTCAGGTTACCAGAAGAGACTTGTTTCGAAGCCAGCTTCTCCTCTGCTGCCAACTATTGAGGCTATTTGTGAGAGTGAAGCTTCCAAATGTGCCCCCATGGGCCCAACAAGCCATCGCATGTCTCAGGTCTCAGAAACAAACAAGATGGCAAACAAACGGTTGTCGCTAGCAAAAAATcctgaagcacaaaaaaaaggaaagTTTGGAGATGCAAGTCGACCTAATAAGCAGTTTTACCAGATGATTGAGGAATACAGAGAGACCCTGGAGAAAGTACCCATGTCCTTGTCTGATCCTGTCAAACCTCACCGAATATGTGTCTGTGTTCGTAAACGTCCGCTGAATAAAAAAGaGTTGGCGAAGAAAGAGATTGATGTGGTAACAATTCCTGGTAATGGAACCCTACTGTTGCATGAGCCCAAGCAGAAAGTGGATCTAACCAAGTACCTAGAGAATCAGACCTTCCATTTTGATTACTCATTTGATGAAGACGCCACTAATGACTTGGTTTACAGGTTCACGGCTAAACCTTTGGTTAAGACCATTTTCGAAGGTGGTATGGCAACGTGTTTCGCATATGGCCAAACAGGCAGTGGAAAGACCCATACTATGGGTGGAGACTTTTCTGGGAAGagccaaaacagctctaaagGGATTTACGCCCTGGCAGCACAGGATGTATTTACCCTCCTAAGGCAAAAGAGATATGCCGATATGGACCTTTGCccttatgtaactttttttgagATCTACAATGGCAAGGTGTTTGACTTGCTGAATAAGAAAGCAAAGCTGCGTGTTTTGGAGGATGAAAAGCAGCAGGTCAATGTTGTTGGCCTGCAGGAAGTGCCGGTGTCATCGGTTGATGATGTCATCAGGATGATTGAGAGGGGAAGTGCGTGcagAACGTCTGGACAAACATTTGCCAATGCCAGCTCGTCTCGTTCACATGCGGTTTTGCAAGTGATTCTAAGGCGTCGGAATTTCCTCCATGGGAAGTTCTCTCTGGTGGACCTTGCTGGGAATGAGCGTGGCACTGATGTCAGCAGTAACGATCGGCACACCATAGTGGAGACCGCAGAGATCAACCGCAGCCTGCTGGCTTTGAAGGAATGTATCCGGTCTCTGGGTCAGAACAGCGAGCACATCCCGTTCAGGATGAGCAAACTCACCCAGGTGCTTCGGGATTCCTTCATTGGAGAGAACTCTAGGACCTGTATGATCGCAATGATCTCGCCGGGTATGAACTCTTGTGAATACACTCTGAATACACTACGTTATGCAAACAGGGTAAAAGAACTGAATGGATTGTCTAAGGGAGCTTCAGCGGAGAATGGTGCACAACTAGAGCTTTCTGAGGAAGGAAACTCTTCAGAAGAGgagtcTGTTCTCCCAGCATTTGAGGCTATATCCCAAGTGTCTGAGATGGAGGAGAGGTTTTATGAAGAACTGAAGGGTTGCAGTGAGTTTGCAAGATCTATGGAATTTCCCTCGTTTGATATTGTAGCCAATTTACCAGAGATCGACACATTCATGAGGAAACTGCAAGAGTCTTACCAGGCTTTGAGATCGGCTATTGAAGCAGAACAGAGGGTCAGGATGTCACCCAACTAATCTAAGATGAGATTCAGCTGCGAACAACCGCAAAGAAACCTCTTACAAAAGCTAATGCAATTTCaatttgttcttttaataatCTTATCTCCTATCTGGCTAGAGATATAtcaagtgtttgtttgtgtctgtttttttttgtgtctgttttaattgtttttgtttactgaataaagGTTCCCTCATCTTGAATCTTTTGTAAATCA
>XM_043254490.1
TTGAATGCAGAGCGGTTAATGTTGGTTTACGACTCATAGGGACAAAGTAGAAGAAAAATACTACTCTCAGTTTTGAGATAGAAACGTTGGCAAAAAATCTTGCAGTTTACAGACTATAATCTGAGATGGATCCTGCGTTGTCGAAGCTTCTTATCGGGCTCGCTGTCAATATAATTCGTAGTGATGGAAGGATCCACAGTGCCACTGTGAAAACTGTCAATGTCACTAAAGGTACAGTGAATGTGGAATGGTCTGAGAAGGACATCACGAAAGGAAAAGAGGTCGACATGGATGAGCTTAAGCAACTCAATTCTGACCTTATGCAACACGTTCAACCAAGCCGTCAAGAGGATTCTGAGTCCTCCCCTGGCCATTTCGCCGCACCTGTGTCAAAACCAGCAAAAAACGTCAGAGCATCAGTGCTTCCTTTAAGGTCGTCAAGAATACCTACTACTTCAGAACCTTCTAGAAGGATGACCACACGTCAGACTTGCTTGTTCCGTCAGCCTGCCCCTCCACCTGTGGTCTCGGCAGTAGCTGCAGAGGAAGTTCTCTCTCACAATCTTCCATCATCTACAATCCCCAAAGCTTCAGGTTACCAGAAGAGACTTGTTTCGAAGCCAGCTTCTCCTCTGCTGCCAACTATTGAGGCTATTTGTGAGAGTGAAGCTTCCAAATGTGCCCCCATGGGCCCAACAAGCCATCGCATGTCTCAGGTCTCAGAAACAAACAAGATGGCAAACAAACGGTTGTCGCTAGCAAAAAATcctgaagcacaaaaaaaaggaaagTTTGGAGATGCAAGTCGACCTAATAAGCAGTTTTACCAGATGATTGAGGAATACAGAGAGACCCTGGAGAAAGTACCCATGTCCTTGTCTGATCCTGTCAAACCTCACCGAATATGTGTCTGTGTTCGTAAACGTCCGCTGAATAAAAAAGaGTTGGCGAAGAAAGAGATTGATGTGGTAACAATTCCTGGTAATGGAACCCTACTGTTGCATGAGCCCAAGCAGAAAGTGGATCTAACCAAGTACCTAGAGAATCAGACCTTCCATTTTGATTACTCATTTGATGAAGACGCCACTAATGACTTGGTTTACAGGTTCACGGCTAAACCTTTGGTTAAGACCATTTTCGAAGGTGGTATGGCAACGTGTTTCGCATATGGCCAAACAGGCAGTGGAAAGACCCATACTATGGGTGGAGACTTTTCTGGGAAGagccaaaacagctctaaagGGATTTACGCCCTGGCAGCACAGGATGTATTTACCCTCCTAAGGCAAAAGAGATATGCCGATATGGACCTTTGCccttatgtaactttttttgagATCTACAATGGCAAGGTGTTTGACTTGCTGAATAAGAAAGCAAAGCTGCGTGTTTTGGAGGATGAAAAGCAGCAGGTCAATGTTGTTGGCCTGCAGGAAGTGCCGGTGTCATCGGTTGATGATGTCATCAGGATGATTGAGAGGGGAAGTGCGTGcagAACGTCTGGACAAACATTTGCCAATGCCAGCTCGTCTCGTTCACATGCGGTTTTGCAAGTGATTCTAAGGCGTCGGAATTTCCTCCATGGGAAGTTCTCTCTGGTGGACCTTGCTGGGAATGAGCGTGGCACTGATGTCAGCAGTAACGATCGGCACACCATAGTGGAGACCGCAGAGATCAACCGCAGCCTGCTGGCTTTGAAGGAATGTATCCGGTCTCTGGGTCAGAACAGCGAGCACATCCCGTTCAGGATGAGCAAACTCACCCAGGTGCTTCGGGATTCCTTCATTGGAGAGAACTCTAGGACCTGTATGATCGCAATGATCTCGCCGGGTATGAACTCTTGTGAATACACTCTGAATACACTACGTTATGCAAACAGGGTAAAAGAACTGAATGGATTGTCTAAGGGAGCTTCAGCGGAGAATGGTGCACAACTAGAGCTTTCTGAGGAAGGAAACTCTTCAGAAGAGgagtcTGTTCTCCCAGCATTTGAGGCTATATCCCAAGTGTCTGAGATGGAGGAGAGGTTTTATGAAGAACTGAAGGGTTGCAGTGAGTTTGCAAGATCTATGGAATTTCCCTCGTTTGATATTGTAGCCAATTTACCAGAGATCGACACATTCATGAGGAAACTGCAAGAGTCTTACCAGGCTTTGAGATCGGCTATTGAAGCAGAACAGAGGGTCAGGATGTCACCCAACTAATCTAAGATGAGATTCAGCTGCGAACAACCGCAAAGAAACCTCTTACAAAAGCTAATGCAATTTCaatttgttcttttaataatCTTATCTCCTATCTGGCTAGAGATATAtcaagtgtttgtttgtgtctgtttttttttgtgtctgttttaattgtttttgtttactgaataaagGTTCCCTCATCTTGAATCTTTTGTAAATCA

Function

symbol description
kif2c Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in microtubule-based movement. Predicted to be part of kinesin complex. Predicted to be active in centrosome; microtubule; and spindle. Orthologous to human KIF2C (kinesin family member 2C).

NR:

description
PREDICTED: kinesin-like protein KIF2C isoform X1

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10393 KIF2_24, MCAK; kinesin family member 2/24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254489.1 True 2443 mRNA 0.45 22 15754575 15761754
XM_043254490.1 False 2410 mRNA 0.45 21 15754575 15761754

Neighbor

gene id symbol gene type direction distance location
kiss1ra LOC107657423,LOC107599909,LOC107722062,LOC107700977,LOC107559038 coding upstream 49004 15694208 ~ 15705571 (+)
zgc:113531 zgc:113531,LOC107739831,LOC107599893,LOC107657421,LOC107557127,LOC107730792,LOC107700978 coding upstream 169402 15580143 ~ 15585173 (+)
slc6a9 slc6a9,LOC107739827,LOC107657455,LOC107730788,LOC107700995,LOC107557089,LOC107599892 coding upstream 190245 15521048 ~ 15564330 (+)
klf17 klf17,LOC107739832,LOC107657420,LOC107599908,LOC107730790,LOC107700996,LOC107559026 coding upstream 235599 15516806 ~ 15518976 (+)
rnf220a rnf220a,LOC107700999,LOC107657453,LOC107739829,LOC107557077,LOC106599374,LOC107599891,LOC107730793 coding upstream 281825 15360754 ~ 15472750 (+)
klhl20 klhl20,LOC106569069 coding downstream 87330 15849084 ~ 15856755 (+)
astn1 astn1 coding downstream 270229 16031983 ~ 16224471 (+)
cop1 rfwd2,LOC107726924,LOC107678936,LOC107722073,LOC107658354 coding downstream 513316 16275070 ~ 16285558 (+)
tnr tnr,LOC107658355,LOC107726886,LOC107558359 coding downstream 563396 16325150 ~ 16443361 (+)
mrps14 LOC107722064,LOC107563590,LOC107658361,LOC107678929,LOC107559053,LOC107726917 coding downstream 734187 16495941 ~ 16497221 (+)
LOC122356092 NA non-coding upstream 11777 15731819 ~ 15742798 (+)
G12419 NA non-coding upstream 76129 15676203 ~ 15678446 (+)
LOC122357737 NA non-coding upstream 254261 15498524 ~ 15500314 (+)
G12321 prpf4ba,LOC107701001 non-coding upstream 501531 15252494 ~ 15253044 (+)
G12255 NA non-coding upstream 574321 15118457 ~ 15180254 (+)
G12451 NA non-coding downstream 49139 15810893 ~ 15811393 (+)
G12491 NA non-coding downstream 116380 15878134 ~ 15878404 (+)
LOC122359940 LOC107743936,LOC101883431 non-coding downstream 271003 16032757 ~ 16034908 (+)
G12530 pappa2,LOC107568983,LOC107722077,LOC107558342,LOC107658303,LOC107678935,LOC107726923 non-coding downstream 502020 16263774 ~ 16264920 (+)
G12607 NA non-coding downstream 929172 16690926 ~ 16693619 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 505326 15241797 ~ 15249249 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 971598 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 1001414 14746107 ~ 14753161 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 1574960 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 2880567 12867929 ~ 12874008 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 98425 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 505289 16267043 ~ 16268797 (+)
LOC122323293 NA other downstream 688378 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 962860 16724614 ~ 16776351 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 1270385 17032139 ~ 17039903 (+)

Expression


Co-expression Network