copa (copa,LOC107591337,LOC107684398,LOC107706393,LOC107659416,LOC107557408)


Basic Information

Item Value
gene id copa
gene name copa,LOC107591337,LOC107684398,LOC107706393,LOC107659416,LOC107557408
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17234058 ~ 17244433 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254492.1
TGTCGGCGCACGGAAACAGGACCCGGGTGTGAAGTGGATCGAGTAGACGTGTCAGCTACGGAAGCGGAGCTGCAGAATCATACACGCAAAATCCCTTCCTAAGTGGGGATGGTTTTAGGATTTACGTTCACATAAACTGAGCTACATCCTCATACGTTACGCATTCCTGTTCGGTTATTATTGTCAGTAAAAATGTTGACCAAATTTGAGACAAAGTCGGCCCGAGTAAAAGGGCTGAGTTTCCACCCGAAACGGCCTTGGATTCTGGCTAGTTTGCACAACGGTGTCATCCAGCTGTGGGACTATCGCATGTGCACCCTCATCGACAAGTTTGATGAGCACGACGGTCCAGTCAGGGGTATTGACTTCCATAAGCAGCAGCCGCTGTTTGTGTCAGGGGGAGATGACTACAAGATCAAGGTGTGGAACTACAAACTGCGTCGGTGTCTGTTTACTCTTCTTGGACATCTTGACTACATTCGTACCACGTTCTTTCATCACGAGTATCCCTGGATCCTGAGTGCCTCAGATGATCAAACCATTCGCATTTGGAATTGGCAATCCAGAACATGTGTCTGtGTGCTGACGGGGCATAATCACTATGTGATGTGCGCTCAGTTCCATCCATCCGAGGACCTGGTGGTGTCAGCTAGCTTGGATCAGACTGTGCGCGTGTGGGATATTTCCGGTCTAAGGAAGAAGAATTTGTCACCGGGTGCTGTGGACACGGAGGTGCGTGGCATCTCTGGTGTCGACCTGTTTGGGGCCTCTGATGCAGTAGTGAAGCACGTTCTGGAGGGTCATGATCGAGGCGTAAACTGGGCAGCCTTCCATCCCAGCATGCCTCTCATTGTGTCAGGAGCAGATGATCGGCAGGTCAAGATCTGGAGGATGAACGAGTCTAAAGCATGGGAGTTGGACACCTGTCGAGGGCACTACAACAATGTGTCCTGTGCAGTGTTCCACCCTCGTCAGGAGCTCATCCTGTCCAACTCTGAGGACAAGAGCATCCGTGTGTGGGACATGTCCAAGAGGACAGGCGTCCAGACCTTTCGCAGAGATCACGACCGGTTCTGGGTGCTGGGGGCTCACCCCAACCTCAATCTGTTCGCTGCTGGCCATGACAGTGGGATGTTGGTGTTCAAACTGGAAAGGGAGCGTCCAGCTTATGCTGTGTATGGTAATATGCTGTACTACGTAAAAGATCGCTTCCTGCGTCAGCTTGATTTCAACAGCAGTAAGGACACAGCTGTAATGCAGCTGCGCAGTGGCTCCAAATTCCCAGTGTTCAGCATGTCCTACAATCCTGCAGAAAACGCTGTCCTGTTGTGCACTAGAGCTACTAATCTGGAAAACAGCACATATGATCTGTACTCCATTCCCAGAGAAAGTGACTCTCAGAATCCTGAtgCTCCTGAAGGTAAGCGCTCTTCTGGTCTGACCGCGGTTTGGGTGGCCAGGAACCGGTTTGCTGTACTCGACCGCATGCACTCACTCCTGATAAAGAACCTGAAGAATGAGATTGTGAAGAAGGTCCAGGTACCGAGCTGTGAGGAGATTTTCTATGCTGGAACTGGATCTCTGCTGCTGCGTGATGCTGAAGGGGTCACACTGTTTGACGTGCAGCAGAAGCGCTCCCTCGCTACAGTCAAAATCGCTAAAGTCAAATATGTGGTGTGGAGCTCTGATGCCAACCATGTGGCACTGCTAGCCAAACACGCCATCATGATCTGCAACAAGAAGTTAGAGAGCCTGTGTAACATCCATGAGAACATTAGAGTAAAGAGTGGAGCCTGGGCTGAGAATGAAGTCTTCATCTACACCACTTCCAACCACATCAAATATGCTCTCACCTCAGGCGATCATGGTATAATCCGTACATTGGATCTGCCCATCTATGTGACAAGAGTCAGAGGTAACAGTGTGTACTGCCTGGATCGTGAGTGCAGACCACGAGTGCTCAACATTGACCCCACAGAGTATCGCTTTAAACTGGCTCTGGTCAATCGCAAGTATGAGGAGGTTCTGCATATGGTGCGTAACGCTAAATTGGTAGGTCAGTCCATCATTGCTTACCTGCAGAAGAAGGGCTACCCAGAGGTTGCTCTGCACTTCGTCAAAGATGAGAAAACTCGTTTCAGCCTGGCTCTGGAGTGTGGAAACATTGAGGTGGCGTTAGAGGCTGCAAAAGCCCTGGATGAACGTAGCTGCTGGGAGCGTCTCGGCGAAGCTGCACTTCTGCAGGGCCATCACCAGGTTGTGGAGATGTGCTACCAGAGAACCAAGAACTTTGACAAACTCACCTTCCTGTACCTTATCACTGGCAACCTGGCCAAACTCAGGAAGATGATGAAGATAGCTGAGATAAGAAAGGACATGAGTGGACACTATCAGGGTGCTCTTTACCTGGGTGATGTCAGTGAGCGTGTTCGAATCCTGAAGAACTGTGGACAAAAGTCTCTGGCTTATCTGACTGCTGCCACTCATGGGATGGATGAGGAGGCTGAAGCCCTGAAGGAGACTTTTGACCTGGAAAAAGAAATGGTACCAGAAGTGGACCCCAATGCCCAGCTGTTGCAGCCGCCACCTCCCATCAACCCCTTGGACACCAACTGGCCTCTGCTCACAGTCTCCAAGGGCTTCTTCGAGGGAGCCATTGCTGCCAAAGGACGTGCTGGCCAGATGGTTGCTGATCTGGACATGGATACTTCAGGAGCAGAAGGCTGGGGAGAAGATGCAGAACTTCATTTGGATGAAGATGGATTCATGGATGCTCAAGAGGGATTGGGAGATGAGGGAGCTATTGGGAAAGAGGAAGGAGGAGGCTGGGATGTTGAGGAAGACCTGGACCTCCCACCAGAACTGGACATACCTTCTGTTGGCGGAGGTGGTGCAGAGGGCGAAGGTTTCTTTGTGCCATCCACCAAGGGCACAAGCCCCACACAGATGTGGTGCAACAACTCTCAGCTGGTGGTGGATCACTTATTGGCTGGATCCTTTGAGACTGCTATGAGGTTGCTGCATGACCAGGTCGGTGTGGTCCAGTTTGGATCTTATAAGCAACTGTTCATGCAGACTCTGTCTCGTGGCCGTACCTGTTACCTGGGCCTGCCATCTCTGCCCTGCTTGCATAGTTACCCACAGAGGAACTGGAAGGACAGCGGGGCTAAAGGGGGTCTGCCAGCCGTGGGCCTGCGTCTCTCTGATCTTATTTCACGCCTACAGCAGTGCTATCAGCTGACCACAGCAGGGCGCTTTGAAGAAGCTGTTGATCGTTTCAGAGCTATTCTTCTCTCCGTACCACTGCTTGTGGTTGACAACAAACAAGAGATTGCAGAGGCTCAACAGCTTATCACTATTTGTAAAGAGTACATTATTGGTCTCACCATGGAGACTGAGAGGAAGAAACTTCCCAAAGACACTCTCGATCAACAAAAGAGACTTTGTGAGATGGCAGCATATTTCACACATTGCAGTCTGCAACCTGTTCACATGGTGTTGGTGTTGAGAACAGCGCTCAATCTTTTCTTCAAACTGCGTaacttcaaaacagcagcaggtTTTGCTCGCCGTCTGCTAGAGCTGGGGCCCAAACCAGAAGTGGCACAACAGACGCGAAAGATTCTTGCAGCATGTGAGAAGAGCCTGACAGATGCTCACCAACTAAACTACGACCCCCACAATCCCTTTGACATCTGCGCAGCCTCTTTCACTCCCCTGTACCGTGGGAGGCCAGTAGAGAAATGTCCCCTGTCTGGAGCCTGCTATTGCCCCAAATACAAAGGAGAGGTCTGCAGGGTCACACAGGTAACAGAGATCGGTAAAGATGTGATCGGCCTGCGCGTCAGCCCACTGCAGTTCCGTTGAACgtgcattaaataaacatggatgaaaacacatgcttttctctcacacatactTTCCTTtataagataagataaaataatgaaaaactcAAGATCAGAAAATACTAGAAATAAAATACCTTATGTGACTAATCTTCTGTGACTCTGCTTTCTGTTATTATATCTGAGGTCTATACAGTATGTATGCTTGTTAGGGTCTTAATAACTGAGTATACATCTGTGACCCTGTTGATTATTGCAAAATGAGTTTCCTGTAAAACtcttaaatattgaaataaaattctgGAAAACAAA

Function

symbol description
copa Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axis; hatching gland; mesoderm; notochord; and pectoral fin. Orthologous to human COPA (COPI coat complex subunit alpha).

NR:

description
PREDICTED: coatomer subunit alpha

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030903 notochord development biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K05236 COPA, RET1; coatomer subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254492.1 True 4160 mRNA 0.49 29 17234058 17244433

Neighbor

gene id symbol gene type direction distance location
pex19 pex19,LOC107591335,LOC107684402,LOC107659417,LOC107557446,LOC107738253 coding upstream 195 17229880 ~ 17233863 (+)
slc1a8b slc1a8b,LOC107591333,LOC107706395,LOC107557414,LOC107738183,LOC107659353,LOC108444332,LOC105889468 coding upstream 14860 17211876 ~ 17219198 (+)
gadd45bb gadd45bb,LOC107738256,LOC107591447,LOC107706329,LOC107559165,LOC107659370,LOC107684432,LOC105906135 coding upstream 86993 17145373 ~ 17147065 (+)
rabgap1l2 rabgap1l2,LOC107706404,LOC107659372,LOC107684408,LOC107559133,LOC107591424,LOC107738216 coding upstream 105699 17124781 ~ 17128359 (+)
fam163aa si:dkey-193b15.8,LOC107591327,LOC107684409,LOC107738190,LOC107706402,LOC107557375,LOC107659374 coding upstream 110994 17109566 ~ 17123064 (+)
apoda.2 apoda.2,LOC107557457,LOC107706325,LOC107591449,LOC107684429,LOC107738179 coding downstream 3502 17247935 ~ 17249242 (+)
samd7 samd7,LOC107591340,LOC107557490 coding downstream 8799 17253232 ~ 17259748 (+)
sec62 sec62,LOC107684396,LOC107738178,LOC107706392,LOC107659352 coding downstream 16378 17260811 ~ 17268079 (+)
gpr160 LOC107738252,LOC107684395,LOC107591343,LOC107706324 coding downstream 32417 17276850 ~ 17280393 (+)
phc3 LOC107738171,LOC107591347,LOC107557539,LOC107706383 coding downstream 89263 17333696 ~ 17343059 (+)
G12985 NA non-coding upstream 27577 17204414 ~ 17206481 (+)
G12982 diras1b,LOC107659419,LOC107591332,LOC107557388,LOC107684404,LOC107738254,LOC108236225,LOC103373792 non-coding upstream 43451 17187117 ~ 17190607 (+)
G12972 NA non-coding upstream 71086 17161176 ~ 17162972 (+)
G12823 map1sb,LOC107738188,LOC107659421,LOC107591330,LOC107684407,LOC107706295 non-coding upstream 99170 17133077 ~ 17134888 (+)
G12818 NA non-coding upstream 110691 17123139 ~ 17123367 (+)
G12977 LOC107706390 non-coding downstream 28221 17272654 ~ 17273162 (+)
G12995 NA non-coding downstream 36827 17281260 ~ 17285830 (+)
G13007 insra,LOC107591352,LOC107558844,LOC107706379,LOC107738166,LOC107668948 non-coding downstream 141629 17386062 ~ 17387548 (+)
G13075 NA non-coding downstream 235291 17479724 ~ 17480102 (+)
G13076 NA non-coding downstream 235790 17480223 ~ 17480494 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other upstream 194155 17032139 ~ 17039903 (+)
LOC122361622 NA other upstream 457707 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 777526 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 965261 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 1358294 15860179 ~ 15875764 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 117812 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 322408 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 362819 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 534906 17779339 ~ 17782364 (+)
G13137 NA other downstream 539746 17784179 ~ 17816764 (+)

Expression


Co-expression Network