zgc:152670


Basic Information

Item Value
gene id zgc:152670
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21391118 ~ 21397540 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254496.1
TCTAGATAGTCTTTGTTTTGATGTATTGATGGTCTGATAATGGCTGTAAAGGAACTGGCTATACTTGTGGTGTTTTCTTTGACTGTCTGCACTGGGCATGAATTCTTCACTTCAACAGATAAGATTTCACATCTTTTTGAAGAGGAGGGTTTCCTTCTGAGTGCCTTCGCTTCGTACATTGATGCAGAAGAAGacattataaagaaaatgaagagCGTCCTTCTGCTTCTTCaactgcgcacacacacagacccttCGGACCCTTCGGAAATAAAAGACCCCGTGGCAGCTTTCAACCTCCTCATACGGCTGAGATCTGACTGGCTGAGCATCGAAAAATACACTCTGAGGAGTCTTCATGAATACAACGTGTATCAGATACTGCTGGAACATGCACAGATCCCTCAGTTAGAGGATTTAATGGGCGCAGCATCAGGACTGATCAGTCTGCAAGAGCTCTACAAACTCTACCCCAACAACATCACAAAGGAAACGTCTTTAAATGCAGATAATGCTTGCTTTGTTGGGTCGGTCGCTTATAGCGAGGACAAATTCCAGCATGCCTTTCTCTGGTTTCTGTACAGTCTGAACAGATTAACAGAATACTCAACCACTACAGAGGAAGAGCTGCTCCAATACCTTAGTGACTCAGCCTATCATTTTGGTAGCCTGCCTACGGCAATCTACTTCAGCAAATGGCTTTTTGATCTGGACCCAACTAATGATGAAGTCAAAGTTCAGCTGGACCTGTATAGACTCCTTCACAATAAGAGAAAATCAAACCCTGACATATTCACGCTGAACACAGAGTCAAGTAACTCCTATGAGGCACTGTGCAGAGGAGAGATTGATGAGAGGACCTCCAGGAGGCAGAGGGCACTGTCCTGTAGATACAGCACAGGTGGAGGAAACCCCAGACTGATGTATGCACCagtgaaagaggaagaggagtgGGACGAGCCTCGAATCATCAGATTTCATGACATTATTTCAGACCAAGAGATAGAGATCCTGAAGAACATCTCCAGACCTCTACTTTCTAGATCAGAGGTTTTTCAAGATGGAAGGGGTGCTGTCTCAAAAGGCCGTGTTTCTCAAagtgtttttctacaAGATGATGACCCTGTGGATGCTCTTGTCAATCAGAGGATTGCAGATGCCACTGGACTCTCCATGGAAACAGCCGAGTTACTGCATGTTCAGAATTATGGGATAGGTGGCAGATATGAACCACATAACGATGCTTTGAACATACGGAATGACAGGATtgcaacatttctattttatATGAGTGATGTGGAGATAGGGGGCGCCACTGTGTTCCCTGAAGCTGGAGTTGCAGTGCAGCCAAAAAAGGGCTCAGCCGTGTTTTGGTACAACCTCCACAGAAATGGAAAAGTGGATTCGAATGCAAAACATGCTGGATGCCCCGTGTTATGGGGTAACAAATGGGtggctaACAAATGGATCTATGAGTTTGGACAAGAGTTCAAGAGACCCTGTTCTTTGTCAGAATGGGAGTAAAGGACCGTACAGAGCCTGAAATCATACAGAAAGCATAGGATATTTGTTTCTGGGCATTCCTGAAATTTAAGATTATTGAAGgtgataaaaaatattaatgctttatagCATTTTAACCCACCAAATACCAGCATTTTGTCACCATGCTTGTGTATCCCATTTTC
>XM_043254497.1
TCTAGATAGTCTTTGTTTTGATGTATTGATGGTCTGATAATGGCTGTAAAGGAACTGGCTATACTTGTGGTGTTTTCTTTGACTGTCTGCACTGGGCATGAATTCTTCACTTCAACAGATAAGATTTCACATCTTTTTGAAGAGGAGGGTTTCCTTCTGAGTGCCTTCGCTTCGTACATTGATGCAGAAGAAGacattataaagaaaatgaagagCGTCCTTCTGCTTCTTCaactgcgcacacacacagacccttCGGACCCTTCGGAAATAAAAGACCCCGTGGCAGCTTTCAACCTCCTCATACGGCTGAGATCTGACTGGCTGAGCATCGAAAAATACACTCTGAGGAGTCTTCATGAATACAACGTGTATCAGATACTGCTGGAACATGCACAGATCCCTCAGTTAGAGGATTTAATGGGCGCAGCATCAGGACTGATCAGTCTGCAAGAGCTCTACAAACTCTACCCCAACAACATCACAAAGGAAACGTCTTTAAATGCAGATAATGCTTGCTTTGTTGGGTCGGTCGCTTATAGCGAGGACAAATTCCAGCATGCCTTTCTCTGGTTTCTGTACAGTCTGAACAGATTAACAGAATACTCAACCACTACAGAGGAAGAGCTGCTCCAATACCTTAGTGACTCAGCCTATCATTTTGGTAGCCTGCCTACGGCAATCTACTTCAGCAAATGGCTTTTTGATCTGGACCCAACTAATGATGAAGTCAAAGTTCAGCTGGACCTGTATAGACTCCTTCACAATAAGAGAAAATCAAACCCTGACATATTCACGCTGAACACAGAGTCAAGTAACTCCTATGAGGCACTGTGCAGAGGAGAGATTGATGAGAGGACCTCCAGGAGGCAGAGGGCACTGTCCTGTAGATACAGCACAGGTGGAGGAAACCCCAGACTGATGTATGCACCagtgaaagaggaagaggagtgGGACGAGCCTCGAATCATCAGATTTCATGACATTATTTCAGACCAAGAGATAGAGATCCTGAAGAACATCTCCAGACCTCTACTTTCTAGATCAGAGGTTTTTCAAGATGGAAGGGGTGCTGTCTCAAAAGGCCGTGTTTCTCAAagtgtttttctacaAGATGATGACCCTGTGGATGCTCTTGTCAATCAGAGGATTGCAGATGCCACTGGACTCTCCATGGAAACAGCCGAGTTACTGCATGTTCAGAATTATGGGATAGGTGGCAGATATGAACCACATAACGATGCTTTGATGAGTGATGTGGAGATAGGGGGCGCCACTGTGTTCCCTGAAGCTGGAGTTGCAGTGCAGCCAAAAAAGGGCTCAGCCGTGTTTTGGTACAACCTCCACAGAAATGGAAAAGTGGATTCGAATGCAAAACATGCTGGATGCCCCGTGTTATGGGGTAACAAATGGGtggctaACAAATGGATCTATGAGTTTGGACAAGAGTTCAAGAGACCCTGTTCTTTGTCAGAATGGGAGTAAAGGACCGTACAGAGCCTGAAATCATACAGAAAGCATAGGATATTTGTTTCTGGGCATTCCTGAAATTTAAGATTATTGAAGgtgataaaaaatattaatgctttatagCATTTTAACCCACCAAATACCAGCATTTTGTCACCATGCTTGTGTATCCCATTTTC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K00472 P4HA; prolyl 4-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254496.1 True 1688 mRNA 0.44 14 21391118 21397540
XM_043254497.1 False 1649 mRNA 0.44 13 21391118 21397540

Neighbor

gene id symbol gene type direction distance location
nlrb5 NA coding upstream 145118 21227323 ~ 21246000 (+)
arhgap12a LOC107659443,LOC107749196,LOC107557799 coding upstream 186245 21185209 ~ 21204873 (+)
epc1b epc1b,LOC107563811,LOC107690579 coding upstream 245828 21131009 ~ 21145290 (+)
LOC122356829 itgb1b.1,LOC107749109,LOC107563812,LOC107690580,LOC107721729,LOC107660233 coding upstream 260789 21123039 ~ 21130329 (+)
itgb1b.2 LOC107749109,LOC107563812 coding upstream 268364 21116469 ~ 21122754 (+)
kcnab1b kcnab1b,LOC107600068,LOC107721779,LOC107557878,LOC107692887,LOC107749128,LOC108428302,LOC108280191,LOC104919203 coding downstream 26286 21423826 ~ 21462693 (+)
pask LOC107749168,LOC107600066,LOC107659937,LOC107692875,LOC107721791 coding downstream 65258 21462798 ~ 21474564 (+)
mterf4 LOC107749141,LOC107659952,LOC107721702,LOC107600070 coding downstream 77071 21474611 ~ 21477524 (+)
LOC122354646 LOC107660261,LOC107749204,LOC107600105,LOC107692861,LOC107721704,LOC101885431,LOC107557850 coding downstream 80119 21477659 ~ 21480866 (+)
klhl24a klhl24,klhl24a,LOC107749171,LOC107600063,LOC107659963,LOC107721788 coding downstream 86239 21483779 ~ 21501610 (+)
G14212 LOC107557873,LOC107721701 non-coding upstream 20619 21365808 ~ 21370499 (+)
G14234 NA non-coding upstream 45017 21342371 ~ 21346101 (+)
G13983 kif5b,LOC108232928,LOC106522897,LOC106906931,LOC103138015,LOC106962517,LOC103479480,LOC101155960 non-coding upstream 222231 21166088 ~ 21168887 (+)
G13995 LOC107749107,LOC107659422,LOC107563825 non-coding upstream 237336 21152103 ~ 21153782 (+)
G13994 NA non-coding upstream 239982 21150658 ~ 21151136 (+)
G14285 NA non-coding downstream 159304 21556844 ~ 21557398 (+)
G14315 NA non-coding downstream 319231 21716771 ~ 21717992 (+)
G14316 NA non-coding downstream 322378 21719918 ~ 21720575 (+)
LOC122359002 NA non-coding downstream 413389 21810929 ~ 21812903 (+)
G14476 NA non-coding downstream 497068 21894608 ~ 21895131 (+)
G14211 NA other upstream 29410 21307407 ~ 21361708 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other upstream 226296 21163942 ~ 21164822 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 882727 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 905900 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 917594 20467268 ~ 20473524 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 83594 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 135705 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 317143 21714683 ~ 21716290 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other downstream 446035 21843575 ~ 21853007 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other downstream 459672 21857212 ~ 21867399 (+)

Expression


Co-expression Network