LOC122356353 (LOC107746908,LOC107686040,LOC107584282,LOC107556566,LOC107664028,LOC107732544)


Basic Information

Item Value
gene id LOC122356353
gene name LOC107746908,LOC107686040,LOC107584282,LOC107556566,LOC107664028,LOC107732544
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14353332 ~ 14360360 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254976.1
ATGAGCACAACACACCTTAATGATGCACCCCATCCCGACGTATCCGTGGGGAGTGTGCAGACATTGGTCTCCAGACCACCACACCCCCCACAAGACCCTATTACAACTAAAAGAGTATGTTTCTACAAAAGCGGGGACCCTCAGTTCACAGGGCACCGGATGGTCATCAACAGCCGCACTTTTAAAACCTTTGATGCCCTTCTAGATGCCCTCTCCAAGAAAGTGCCTCTGCCATTTGGGGTAAGGACCATCACGACACCCAGGGGAACGCATGTTGTCCGCACCCTTAATGATGTGCAGGATGGGGGCTCTTATCTGTGCTCAGATCAGAAGAAAGTCAAGCCTTTTAACTTGGATGAGGTACATAAGAGACAGGTCCCTTGGAACACTACCAGACCTGTCAGTGCAGGACATAAAGCACGAAGGGAACTGGTCCGGCAGCTAGCAAAGAGAAATGAAGTGACCACAAGGGCAGGCAAAACATCAGACAACACAGTGGTGGTACGAACACCAAAAAGACTGACGGTGTATAAAAACAGGGATCCAAGCATGAAGCGAGTAGTTGTTCTTCATAGGAGAACAGCCCCAAGTTTTGAAGCTCTTTTGGAGTATCTTTCTCAAGTGATGCAGTTCCCAGTTGTGAAGCTTTACACAGAAGAAGGCAGAAGAGTTGAAGGACTTTCTGCCCTCATCTTGTGCTCTGGGATTGTTGTGGCAGCTGGTAACGAACCCTTCAGAACAGGAATCTACAATCTCCAAGCTCCAACTAAAGTCCATTCAAGGATATCTGAATCTTTGCATCCTACACAAACTGAGACGCCACGACaagaaaaaaagattttagctGGGACTTTTTCAAGATCAAGGAATTTCTCTTCATCTTCTGAGAGGTTCCTTGTAGAGCAGATCAATAAGTCACTAAATGGAAATCTGACAGAGCACAATAGGACAAATAATGAATCAATGGAAACCGAAGGCAGTCAGCCAGTGGGATCAGATGAGATAGAGACCTGTGGCTGTACAGATGGCATGGAGCAGAGGAATTACCCCATTATGCCTACCGAAGATGACATTGAAAAATCATTTCGGGTCAATGAAGATGGCAGCATGACAGTGGAGATGAAGGTGCATCTTACTATAAAACAAGAGGAAATGATTCACTGGACAACTACACTGAGCCGCATTTCTGTTAATAACCAGCAGAGGGCATTGTGCAATTCCAAGCCACAATCAGGTGCAAACTCATTAGACGTAACCAATGACTCAGGCAAAGAGTCGAATGGACCTCATAGCCTGGATTCTAAAGAAATCAATACACTCGCTAACAAATCTGTAGAATTCATCAAAGAAGAAAGGGAACATTATGGCAGtgatacatcatctgaaaagcCCAAGTCTATCTATAGAAGGCTACCCACTCCAGGACccagacaacaaaaaaaagaggccTCAGTCGAAAATATCAAAACTGTTTCAGAGACTGGAGTTCAGGAGAGTACAGTAGGGGCATACTCATACATGGAGCGAACTGCACAGGGAGAGCTGACGGAGGGTTACTGTGTGGTTAGTCGCAGCAGTAGCAGCAGCACAAGAACTGTGTCAAAACCTGGGAAGAGCGAAATGGGGGAGGTTAAGCAGAAACAGACCGACACTTCCTTTAGATCCTCAGGTGTTGCACAGATTCTTCAGCTCCAAAACAATGGAACAATGGGAATAACGGAGACTGTGATGCACATATATGAATCACAGGGTACGTGTGACAATTACAATGCAAATACACAGGTGTTTGTGGACAACAAGCCTGGATATCACACAAAAGCTTTGCCTCGGAGTAAGCCAGGCTCAACAGACTCAGGACCCCGTTCGTCCTGCGATGATTGCGATGTAGATCTCACTCGGCAGTCCACAAGTTCCAACTCCCAGGATGGCAGAAGATCcaatatattatcattatcatctgCATATTCAACACCTCGAAAAAAGATAAACAACAGTTCATCCATCCTTACTgatgatgaaaaacaaacattggtTGAAGGTACGTCCGAAGTGACTGAAAAGGAAAGTTTGCATCCAGCTGAAGCGATGGAACACGTCTCTGATGATAAAAGCATtgtcagtaataaaaataatacaccaAAGTCCAAAAAATCTAAGAAAAGTACTTCCTCTGAATCTAATGGATTTGTCAAAAACATAAGGGGCAGTGCTCCAGGGTCTTCAAATAGTCTCCAAATGACGTCAGATACATTAAGCCACACAGGATCAGAGAAGAAGACTAGCTCAGCAAAAAGTGACAGACGTGAACACAAATCTGtaagagacaaaaataaaaagacaaaaacatttgaaagttCTCCAAAGATTAGACATTTAAATCTCAATACTAGCAATCATAGCCAGTCAGATGAAGATCTCAAGTTAAAAGATAAAACCATCAAAGACATCTCCCACAAAGTTAACACAAATGGCCATGACTCTCGAGGGCCCAAACTAAAGAAGAATAGTTTAGACATTCAATCTCCAGCCCCAATAAAAAGACTCCAGAAACAAAGATCAATGAATGGTGTCAGATCAAAACAATCCTCTAAACAAAAACAGGAGTTGAGTGAAAGTGCGTCATTGCCCGTGCTACAATTATCCTCCTCCAGTGTAAATCAATATGTTGAAAGCTGGCTAAATAAAATTGAACCAGAATCTGTGCCCTACGATGATGAATCAAACCACCCAGAGACTGTACCAAGAGCAGTATTCCAGATAGGAAGTGACTCCACTGATGGATCTGAGATTAAAAGTGACCATGAAAAAGATAGCGTAGATGTTGAAGGCCCTTCTCTAGAAGCTAATGGTGAAGAGAGACCAACTTCTCACCCACTTGTACAAATAATGTATGAGGGAGAGCCGACTGAACCACAGATGCCAAGGGGATTTTGTAAATCAATGCCAATTTTGAGAGTACATTCTGAACAGGAGGGTCTTGTTAGAATGCACAGGTCATCTGAGAACTTGGTTCCTCCTGATCCTTCTGGGACATTACAAAGTACAGAGGTCAGAGTAAGGTCAGGCATGAAACCAGTTTTGCAACAATTGTGTTTGTCTGTTCAGTCCATCAAGCAGGCATTGAGTCCGACCCATTTAACACCTATGGAAAGGGAAAAGTCAAGTAGCCTCCCGGATTTTTCCTCTCAGGTGGCCTCTGCCTTTGGGTCTCCCTCGAGAGCTCTTCTGTCTTTCTTGTCACTGATGACTCTGAGAGATGGACTTTCAGTCCTCTACAAAGATGAATCACCAGCCAGCAACTCGAATGTCTGTCCAGAGGCCCTGCAGGTAATGCAGTCCTTGGAAAAAATATCCAATATTAAAGATGAAGATGAGCTAAGGGCCAGCTTGACCAGTCTTCAAAGTTCAACTTCATCCAAACTAAAACAAAGCTGGAGAGATTTCCAAGAGCAAAATGTCTTTGAAGATAGTCCCCCACTGTCACCAAGATTCTCAGAGCAGGAGTTTGTTGTAGAAGTAGACTTAGAAGGAGAAACAGAAGATCCGGACAAACAGTGCAGTTTTAATATAGAACAGTTACTGGATGAACTGAACATGCCTGAAGATCTTCACAGAGAGATTTCCTCTCTTGTTGAAGGAAAACAACAGTATTTTAATCAAGCAGACGTAATCAAACAAGATGACACCATCAGTGAAATCTCAggtaaagaaaaggaaaatgaagATGGCTCCTTAACTAGTAGTTTAGAGAAAGCTGCTGACATGGAAGAGGAAAAGGAGAATATTAACCAAGACAGTGACAAAACCAATGATGACATAACAAATGATCAACTGGAACCAGAATCTCAAGTTCATTCTTCTGACTCGGAAGCTATAGAAGAGGACATAGGTAATGAAGATTCTGGTGTAGCAGTGCCCATTCAATCCCCTGAGGGTAATGGTAGTGATTCAagtaaaacagacattttagaAACATCTGATAACAACCAGATGAATGCAGAGAACGTTCAAGAAAGTGTAGTGCATGAAGATTCTGaatctgaaaacaaacatgGTGAAGGAGAACGTTCTCCAACAtcagaacaaaaaataacagatgtagcttcagaagaagtttCTGAGTTCTCTGATCACCAAGACAATATatctgaaagagaaaacaatgtAACACCAGATATTATAGAAGAACGAGACACTGATGTAGAGGAGGAGGACACCGTTCAGAACATCAGGGTAACTAACGAACAATCAGATGCTTCAGAACCCGAAGACACAAATGACAAATGCTCATGTTCAGCATCAGAAACTGACTGTGTGCCATTTTCAGACAGAGAGGCAGCTGAGCTAAATGACAACAATCAGTGCAGTGCAGTTGAGAACTGTGCCAGAAAAGAAGCTGATCTTTCTGATTTTGAGGAAACGATTAGCGATGGAGGACATGAACAAGAAAACAAGTCCATCTCATCAGAATGTAAGTCTATTCACTCAGAGCCCTCAGAGACATCATCACCTTGTTGTGATACAGAGGGTGAATGTAGAGAGCAAACATTAGAATCATCCAGCCAAGAAGATGATCAGGTGGTGTCTCCAGATGTGAAAGATGAAGATCAACAAGAGGATGTGGCAGAGATTCAGGAAGGTGAGGATTCTGATCCACACTGCAACAGCAGCCCTCAATATCTTAGTAATGATGAAAACAGTATGACTCCAGAAGCTGAATATGAGAAAACACATCAAATTGAAAATGGACTTGTggaaaaatatgatattaatgaAGTGGACCATGAGACCTCTGAAGTTTGTGAACAAGTAGATCCATGTGATGAACCTGAGGTTGTGGATGAGGATGTGACAGAAACAAAGCCGAACACAAGCAATTCTGAACCCTACAAAGTCCAGACAGTAGAGGAACGTAGTCTCACCAAAGAGGACAGTTCTGCTGAAGAGTGTGATGCAGAAGAGGAAGACTACATAGATTCTCATAATAGTATGAATGATGTTACACACTCTTGTACTGATTCTAAAGATTCTGTGGAAGGGGAGTCATGTGGCAGTATGAGTACAAGTGAACACCAGTTTGAGAAAGCTGAGAGTTTAGGAATGGAGCATGGCTATCATTATTTACTACATCCAGCTGAGATCTCACAAGAGTTGCTAGACCTAATCAATTCAGCTTTGTTGTCTTCTACCCTGACTGTCACATCTGATTCAAATGGCAACCTCAGAATAGAGCCAGACAAGCACAAAATGAGGGAGATGTTTATGGCTTGCCAAAAGATAGATAATCAGTATGGTCAAAAATGTCTCCCGAGCCCAAATACATCAGATTTGTCTGATTATAGACCTGAGACATCTGACAATGGTGGGTACCAGTCTCAGGAGCTTTTTACAGAGAGTGGAGAAGACGAGACGGAGAGGTTACGTATCTTTCGAGAAATCATAAAACGAAGTTCTGAGCAGCCAAAAAGAATAAACCATGTAAAGGAGAATGGCTTGATGAAATCATCCACATGGATGACTACAAAACCCACTCCCAGTCCAAGTTTAAAAAGCAGCAGTCTAGCTTCTTTTCAGGATAATAAAAGCGCAATCCAAGACACAGTGTCCCACAGTAGATCGCAAAGTTCACTTGACGGAGACTCTGAGTCGGTACAGTGCTTGGCTTTGAAAGACAATGTGGACTATGGAGAGGGAGTGCTGATTGATAAAGGCAGGTGGCTTCTCAAGGAAAACCACCTCATTCGTAACTCTCCTCCTGCAACTATGGGTATGTATGGAAATGGAGACACCACATCAGCAGACACGGCTCAGGACAACAGAAGTGAGGATTCAGCCTACCCATACTGTGAGAACCAAGCCTCGCCTCTGGCTGTAATATCCTCTTCTGAGCTGGAGGACATGGCTAAACCCCCTACACCAAAGTGTACGTACTTCAATATGGCACATAGCAGTGACTCTGATCCTCTCTTGGATGCCCAAAGTGTCAATAATGGCAGCAGTAAAGGGAATGCTAGGAAGAACAAGGAACTTAAGGTATCTCCCATGGGTGAGTCCTCTAAAATGTGGGCAAAGAAAAATGGAAGTATGTCTTCATTCGCATCTGTTGAGTTTAAACTGCCTGATGGGAAAGTTCATCCTCAGGAGGCGTCAGGATCTGGTTCTAACAGATCTCAGAGTCAAGACAGCCGGAGAGTACAAGAGGAGGAGTCAAGGGTAGGTCTAAATCTCAGGTGTGGGCAACACTGCCCAATTCTGTAG

Function

NR:

description
PREDICTED: oxygen-regulated protein 1-like isoform X1

GO: NA

KEGG:

id description
K19538 RP1; retinitis pigmentosa 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254976.1 True 6258 mRNA 0.43 3 14353332 14360360

Neighbor

gene id symbol gene type direction distance location
LOC122357171 LOC107556546,LOC107664084 coding downstream 4994 14345388 ~ 14348338 (-)
ctnnd2b ctnnd2b,LOC107746909,LOC107686039,LOC107550705,LOC107664081,LOC107732586 coding downstream 10699 14274964 ~ 14342633 (-)
cbln2a cbln2a,cbln2,LOC107586364,LOC107686082,LOC107550708,LOC107664049 coding downstream 121721 14228227 ~ 14231611 (-)
jph1b jph1b,jph1,LOC107746914,LOC107550709,LOC107686034,LOC107584332,LOC108435725,LOC108280498 coding downstream 173755 14158334 ~ 14179577 (-)
elocb TCEB1,tceb1,tceb1b,LOC108426597 coding downstream 201349 14150170 ~ 14151983 (-)
rgs20 rgs20,LOC107584260,LOC107686043,LOC107746905,LOC107664043,LOC107556579 coding upstream 10566 14370926 ~ 14379735 (-)
myl12.2 myl12.2,LOC107732590,LOC107746904,LOC103037289,LOC108436131 coding upstream 76201 14436561 ~ 14439000 (-)
emilin2a LOC107746901,LOC107686046,LOC107584212,LOC107751548,LOC107664089,LOC107558120 coding upstream 119821 14480181 ~ 14493766 (-)
clul1 LOC107664027,LOC107584165,LOC107556660,LOC107713977,LOC107686051 coding upstream 275384 14635744 ~ 14641164 (-)
mrc1b mrc1,LOC107713970,LOC107686053,LOC107664090,LOC107751555,LOC107556679 coding upstream 349172 14709532 ~ 14721348 (-)
G11982 NA non-coding downstream 102792 14249003 ~ 14250540 (-)
G11969 NA non-coding downstream 159520 14193575 ~ 14193812 (-)
LOC122357595 NA non-coding downstream 162223 14190476 ~ 14191109 (-)
G11966 NA non-coding downstream 163734 14189196 ~ 14189598 (-)
G11940 LOC107751355,LOC107686027,LOC107584387,LOC107550714,LOC107732566,LOC107664055 non-coding downstream 211475 14139482 ~ 14141857 (-)
G12024 NA non-coding upstream 68551 14428911 ~ 14430054 (-)
G12027 NA non-coding upstream 79383 14439743 ~ 14440787 (-)
G12034 NA non-coding upstream 96193 14456553 ~ 14459327 (-)
G12062 NA non-coding upstream 307373 14667733 ~ 14668539 (-)
G12082 NA non-coding upstream 330817 14691177 ~ 14699019 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other downstream 788967 13553773 ~ 13564365 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other downstream 883069 13315229 ~ 13470263 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other downstream 1515239 12789524 ~ 12838093 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 2738394 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 2775816 11576391 ~ 11577516 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 218635 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 760227 15120587 ~ 15127491 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other upstream 773611 15133971 ~ 15153989 (-)
ccdc24 ccdc24,LOC107657456,LOC107599905 other upstream 1199303 15559663 ~ 15579706 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 1864363 16224723 ~ 16268835 (-)

Expression


Co-expression Network