tmem275a (si:dkey-225f23.5,LOC107577942,LOC107721454,LOC107677914,LOC107553245)


Basic Information

Item Value
gene id tmem275a
gene name si:dkey-225f23.5,LOC107577942,LOC107721454,LOC107677914,LOC107553245
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8348639 ~ 8353246 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255196.1
acacacactcaatgaACACATGCCCACCCGCTCATTCACACCACTGCACCCATCAACACGCGGGCTTCTCTGCAACCTGTTACTGCCGACGCGAAACGACAACATCGCGGCACTTAATGCTTAGTATCATTTGGTTTTGTAAAGGGGGGGAAAAACCCCAGTCGTTTATTGAGAGAAATCCCGCCACTCGTAATCTGAGGCTCGGATCCAGCGCGTGGAGCGCGACTGACGTGTATCGAGTGACAGCGGCGTTGATCTCAATGAGTCGAGCGGCGAAACCCGCGTGAAAGACATCGTGTTTTTTAGGACGCCGTTTTTGACTTAAAGGAAACGACAGGCTTCTCACGTCCCCGGAGACCTCCATCGTCAAGCAAGCCTGTGTAATTCCTCCGGACGTCGACTAAGCGGTAGCATCCGCAGTGAATAAAGCAAACACTAACGAGGAAGCAATGGTCATTTTCTACAGTTTGCTGATAAGGACACAGCAGGTGTAAGTGGGGTTGTGGCAGCAAACGCTGTAACCGCGACCCTCAAAAATGGTTTGCAGCGAACAGAGTTCTGGCACATCGGTGCCCAAAAAGGAAACGCAGACCCGCAAGAAGCGGAAATCCCGTCCTCAGGGTCTGCCCTCTCCAGCCCTCTGCTGTGCGTGTGGCTTGTGCATCATGCTGGCAGGCATCAACATCACCTTAGTAGGCGCCTTCGCCTTCAGCACGCTTGTGCCCTCTAGCAACCCCCCGATCATCATCGGACCTATACTCCTGCTGGTGGCGTTCTCCTTCTTCGGGGCCTGCTGCATCTGCAGTCGCTTGCCTCCGCCTCAGAGCTCCCGGCGGTCCAAAGGAGGTGGCGGTTTGGGATTCATGGGACGGGGCGGAGGCGGGTTGAGTGGAGGGGCGGCGTTTGAGATCGAGACCAGCGAACACACGATGCAGGACACCACAGCCGTTCAGCTGAGCCCGACCAACTCACCCTGCTCCTCTCACGCCTCCAGCCCCGAAAGAGAGGCCCCTGCCACGGCCGCCAACGCCACCGTTCCCGCCCCAGAGTACGTCCCTCCGCGAGCCTGCAAGCTCTTCACTATGGAGACCAACGGACCCAACTCAGCAGCTTTTTCTGCTTCTACAGGGGGTGGAGGGGCAGTCCGGCTCACTTTGCCCTCGGACTGCGCTGCCACTTAAGGCTGCTGGTTCAGGTCGCTCTCTGGAGAAGGGCTGGCGTTACGTtatgtaaatagtttttcagAGAGGAAGACAAGCACTTTGCGTGAAGAATTCATTCAATTATCACTGCTGGCTTGTGCCACGAGGTGCAATAACAATAGAAACGCTCGCATAAATTCAGCGGGTTGATTTTTGGAGGCCTGTGCGCTCCTAATAGAATTGACAGAGGTATGTCAGAAGCATATGAGGAGATTTTGCATTCTCTTACCCAAAGAGAAAAAGCCTTGAAAGGTGAATCACTGTGGCGTGCTTCACATATTCATACAGTGCCACTGTTACTCAGAGCATTCGCAGTTACTGCGCTCAAAAGAGACAGGATCAGCTGTTGTGTAAAGACGGCTTTGGAGACGAGCCTGAGAAACAGAATGGAGAAAGACATTACACTGCGCATTGTCATATGTCAGTGCCCAGACCAAAAAACAGAGCTGTTGTATATTTTCCCTTCAATGTTTTTGTCTTcgtcattttaaatgctaaactACATTGAACTGtcgatttttattttgatgactCTCCGTGGCCGACCTTTTTGGATTCCGTCCTCATTGGATGCTTAAAAATACCGTGACACTGTGCGAGAGCactgccgtttttttttttaatttacacgCAATTTAGAAAACGAGGTTGCTGAGCGTTGCCGCTGTTTGGGTTCGTGTCGGATAAACGATTCAAGTGCAATGAAGCGCGGGATAAAAACTTTTTCCGCAAGTTATAGTGCAATTCGAAAAGCGGCGTGGCGACAACGAACGTTTGCTGCACCCATGCTGTGGTTGAATTTTATTTGTCGTCGAAAGTTGTGACATAACTTAATGAACGGCCCATAGTTCTATAAGACAAAAAGGAAACTAGCCGCAAGCCTTCATTTTACACTGTGGTTTACAATGCTGCCaagtaaaacaatatttctttCCCTTATGGCTGCCAAAGGCTGTTTTCTCCTTCAAGCATTCCTCTTCTGTTATCCTCTGTTGTCAATGTCTTATGTCAACAGTATGGTAACATTCTAGCATGCTACCTACATCTGCTCACAGTGTTCCTTCCTAAAATCTCTCTTATCTTACTCTCTCGGTGCCCTCTGTTTTTCCTTCGAAAGCAAGATCCAGAATTGTTCTCAAACATGCCCTCCATCACCGACCCACGCTGATGGTTCAAACCAAACGGCGAAACAATTTCCTCATGTTGATTCTACCAGAGAGGTCAGCTAAAAGCAGCTTTTCGGTGGCCGGACATATTGAAAAAGCAAAAGACAATACctttttaagaagaaaaaagatcTAAAGTAGCTCGTTTTTTTTGTCCCTTTGTTATCATAAGTCATCGTTCCCGACCAGCAGAAAGGgctgatttttaataaaacaatcatGTACTTGGTGTCCCTTCAGTATTTCGTTTTCCGAGTTCCAATGCATCTGTTAATATTTATACGTTTAGCTGCGTAGTCATACTATGTATAAGTATATGGGGTCGGTACGTGATGGATACTGAAGAAAGTGCAACATGAACGGCATGCTTACGAACAGTGCACTGCTGCGACGGAAGAGAGACATTGAAACGCATCAGTTTCAGCGTAAGAAGAAGTTGTGGAAACATTGGCGTCTTTAGACTATGTCACCGCCTCTGTTTGTGAGCTGCTATTTGCCATCTACACATCTGCTGTAGTCTGAATGAAACGAACGCTGCCTTAACGACAGTGATCTCAGGATCAAACCAGTGAGGGCTACTCAAATGTCCAACGAGAACATTTGGTCACGTGGTATTAATGTACTTACGGAAACGTtgtattgttataattattttctacCGCGTATGTTTTCAAAAAGGCATTTAAACGGAAGGAAATGCAATGCGCAGGTTAAAAAGGTCAGATGACGCTGATTAgtattgctgttattattttgcCGATCGGCCGCGTTGTGCATAATGATGTATGAATGACGGCTTGATTTAAGTATCGTTGGCActggattgtttttttgtaagttgCTCACATCATAATTATACACCGTTTAAAAACCCGCTCACATAATTCAATTACAGTCGTGTCCGaacttgtttttcttaaatcttTACATTTCCGAACTCTTCTCTTTGTTCTTTTGAGCATAAATgtggaaaatattacattaggttgtgaaaaaaaaaacaactcttgGCATGTcagaatataaattaaaagcaacattCTTAA

Function

symbol description
si:dkey-225f23.5 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM275 (transmembrane protein 275).

NR:

description
PREDICTED: uncharacterized protein LOC107577942

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255196.1 True 3414 mRNA 0.47 2 8348639 8353246

Neighbor

gene id symbol gene type direction distance location
pbx1a pbx1a,LOC107677498,LOC107732204,LOC107700547,LOC107563289,LOC104918287,LOC108272157,LOC103479586,LOC101069707 coding downstream 84063 8208651 ~ 8264576 (-)
ptprfb ptprfb,LOC107710549,LOC107564386,LOC107700544 coding downstream 658064 7582082 ~ 7690575 (-)
st3gal3b st3gal3b,LOC107551715,LOC107743372 coding downstream 889047 7415442 ~ 7459592 (-)
LOC122357527 artn,LOC107743380,LOC107684941,LOC107551717,LOC107700541,LOC107564390 coding downstream 940722 7394352 ~ 7407917 (-)
pif1 pif1,LOC107551719,LOC107716931 coding downstream 980919 7357422 ~ 7367720 (-)
kncn kncn,si:dkey-225f23.3,LOC107700491,LOC107710543,LOC107732197 coding upstream 4485 8357731 ~ 8366287 (-)
cdc20 cdc20,LOC107732200,LOC107553255,LOC107563294,LOC107700550,LOC107710546,LOC107677877 coding upstream 29741 8382987 ~ 8386258 (-)
thpo thpo,LOC107553247 coding upstream 77301 8430547 ~ 8436282 (-)
fam131a fam131a,LOC107677593,LOC107700514,LOC107732946,LOC107710547,LOC107563308,LOC106528322 coding upstream 133864 8487110 ~ 8496645 (-)
eif4g1a LOC107563298,LOC107732943,LOC107677601 coding upstream 146019 8499265 ~ 8519579 (-)
G10194 NA non-coding downstream 278286 8070154 ~ 8070353 (-)
G10185 NA non-coding downstream 414014 7934401 ~ 7934625 (-)
LOC122328801 NA non-coding downstream 557029 7788737 ~ 7791610 (-)
G10165 NA non-coding downstream 816574 7526339 ~ 7532065 (-)
G10029 rpl5,LOC107568084,LOC107694375,LOC107743362,LOC107716952 non-coding downstream 1142237 7204484 ~ 7206402 (-)
G10345 NA non-coding upstream 277160 8630406 ~ 8630606 (-)
G10389 NA non-coding upstream 401603 8754849 ~ 8755145 (-)
G10400 NA non-coding upstream 445336 8798582 ~ 8798986 (-)
G10432 NA non-coding upstream 576244 8929490 ~ 8930083 (-)
G10438 NA non-coding upstream 589853 8943099 ~ 8943593 (-)
G10213 NA other downstream 240851 8106856 ~ 8107788 (-)
G10196 NA other downstream 276805 8070776 ~ 8071834 (-)
G10178 NA other downstream 563485 7784468 ~ 7785154 (-)
G10170 kdm4ab,LOC107564389,LOC107700543,LOC107551714,LOC107684932,LOC107743373 other downstream 854795 7492206 ~ 7493844 (-)
dipk1aa fam69a,fam69aa,LOC107716951,LOC107568082,LOC108436064,LOC107694372,LOC107743375,LOC108280758 other downstream 1124900 7206542 ~ 7223739 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other upstream 50081 8403327 ~ 8427904 (-)
abca4b abca4,abca4b,LOC107564534,LOC107680047,LOC107745690 other upstream 828810 9182056 ~ 9210041 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other upstream 1138317 9491563 ~ 9519781 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other upstream 1253077 9606323 ~ 9618473 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other upstream 1726936 10080182 ~ 10095857 (-)

Expression


Co-expression Network