sdr39u1 (sdr39u1,LOC107668982,LOC107738159,LOC107557702,LOC107659398,LOC107591428,LOC107706372,LOC107579374)


Basic Information

Item Value
gene id sdr39u1
gene name sdr39u1,LOC107668982,LOC107738159,LOC107557702,LOC107659398,LOC107591428,LOC107706372,LOC107579374
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17508786 ~ 17511815 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255265.1
GGCTGCGGTCGCGTTCCACTTTGTGTCAATGACGCGATAAACATACGACGCTCTCAACCTTCGCCGAGAGAAAGATGTAAAAGAAGTGGATTTCTGCAACTTGTCTGGATAAAGGGACTGTACTTTATAACCACAATGAGAGTTGTAATAGGTGGAGGATCAGGGTTTGTGGGTCGTGAGCTAACACGTTTGTTGAAAAGCAGAGGTCATGAGGTCACATTTATATCCAGGCAGCCTGGCCCAGGAAAAATAACATGGGCTGATGTAGAGTCAAGAGGCCTCCCTCCATGTGAGGGTGCTGTGAATCTAGCAGGGGAGAATATTATGAATCCTTTAAGATGGTGGAATGAAAGTTTCAAAAAGGATCTGGTCTTTAGCCGAGTAAACACAACCAGAATTCTTGCCCAAGCTATTGCCTCTTCACCAACTCCACCACATTCATGGGTGCTTGTTACAGGAGTAGCGTGTTATAAACCTAGTCTTCAAACCCATTACACCGAGGAGAGCGAATGGACACCATTTGACTTCCTGTCTCGTTTGGTGAAAGAGTGGGAGGCAACAGGGCAGCTTCCTGAAAACAGTGCTAAGAAAACAAGACAAGTGATCATCAGGCCAGGTGCTGTTTTAGGGCGTGACGGTGGCGCCATGAAAAAGATGTTGATTCCCTTCTGGCTTGGCTTGGGTGGGACGCTTGGCTCAGGACGACAGCCCTTCCCTTGGATCCATGTGTCAGACCTGGTTGGCATCATCGCCCATGCCTTGGAGCCCAAAGTAGAACCATCCACAGAACCAGATGTATTTAATGGAGTTGCGCCTGCACTGAATACCAATTTTGAATTCACTAAGGAATTGGGCAGGACTATAAAAAGACCCACTATCTTCCCTGTGCCAGGCTTTTTCTTGGATGTCTTCCTCGGTTCTGAGCGAGCTGTGATCCTTACACAAGGCCAGAAAGTGGTGCCCAAGAAAACTCTTGAGTCTGGCTTTGAGTTTCAGTACCCAGATCTTACCTCtgctttaaaagaaattgtTAGAAATTAGTCATCAgtcaaaacagagaaaagaccTGAagagatttagatttttttaaatattattttaaattaagcaaatggaaaaataaaacttgcTTGTACTTGCTTGACTTAATGTAGATATTCAGAAATACACATTGTTCCTTCATCTGTTCCTCATTAAGAATTACTCATATCTGTCTGTGTGAACAAAATGAGCACTTCAttggtaaataaatgtttatatgaaaATTG
>XM_043255276.1
GGCTGCGGTCGCGTTCCACTTTGTGTCAATGACGCGATAAACATACGACGCTCTCAACCTTCGCCGAGAGAAAGATGTAAAAGAAGTGGATTTCTGCAACTTGTCTGGATAAAGGGACTGTACTTTATAACCACAATGAGAGTTGTAATAGGTGGAGGATCAGGGTTTGTGGGTCGTGAGCTAACACGTTTGTTGAAAAGCAGAGGTCATGAGGTCACATTTATATCCAGGCAGCCTGGCCCAGGAAAAATAACATGGGCTGATGTAGAGTCAAGAGGCCTCCCTCCATGTGAGGGTGCTGTGAATCTAGCAGGGGAGAATATTATGAATCCTTTAAGATGGTGGAATGAAAGTTTCAAAAAGGATCTGGTCTTTAGCCGAGTAAACACAACCAGAATTCTTGCCCAAGCTATTGCCTCTTCACCAACTCCACCACATTCATGGGTGCTTGTTACAGGAGTAGGTGCTGTTTTAGGGCGTGACGGTGGCGCCATGAAAAAGATGTTGATTCCCTTCTGGCTTGGCTTGGGTGGGACGCTTGGCTCAGGACGACAGCCCTTCCCTTGGATCCATGTGTCAGACCTGGTTGGCATCATCGCCCATGCCTTGGAGCCCAAAGTAGAACCATCCACAGAACCAGATGTATTTAATGGAGTTGCGCCTGCACTGAATACCAATTTTGAATTCACTAAGGAATTGGGCAGGACTATAAAAAGACCCACTATCTTCCCTGTGCCAGGCTTTTTCTTGGATGTCTTCCTCGGTTCTGAGCGAGCTGTGATCCTTACACAAGGCCAGAAAGTGGTGCCCAAGAAAACTCTTGAGTCTGGCTTTGAGTTTCAGTACCCAGATCTTACCTCtgctttaaaagaaattgtTAGAAATTAGTCATCAgtcaaaacagagaaaagaccTGAagagatttagatttttttaaatattattttaaattaagcaaatggaaaaataaaacttgcTTGTACTTGCTTGACTTAATGTAGATATTCAGAAATACACATTGTTCCTTCATCTGTTCCTCATTAAGAATTACTCATATCTGTCTGTGTGAACAAAATGAGCACTTCAttggtaaataaatgtttatatgaaaATTG

Function

symbol description
sdr39u1 Predicted to enable catalytic activity. Orthologous to human SDR39U1 (short chain dehydrogenase/reductase family 39U member 1).

NR:

description
epimerase family protein SDR39U1

GO: NA

KEGG:

id description
K07071 K07071; uncharacterized protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255265.1 True 1268 mRNA 0.43 6 17508786 17511815
XM_043255276.1 False 1115 mRNA 0.43 5 17508786 17511815

Neighbor

gene id symbol gene type direction distance location
ltb4r2b LOC107668991,LOC107738160,LOC107706371,LOC107659397 coding upstream 2664 17501343 ~ 17506122 (+)
ftr66 ftr66,LOC107668987,LOC107591451,LOC107706375,LOC107659402,LOC107557692 coding upstream 22932 17480704 ~ 17485854 (+)
myadmb si:dkeyp-66d1.7,LOC107706376,LOC107668989,LOC107591450,LOC107738251,LOC107659403,LOC107557715,LOC103040076 coding upstream 29846 17473538 ~ 17478940 (+)
phc3 LOC107738171,LOC107591347,LOC107557539,LOC107706383 coding upstream 165727 17333696 ~ 17343059 (+)
gpr160 LOC107738252,LOC107684395,LOC107591343,LOC107706324 coding upstream 228393 17276850 ~ 17280393 (+)
parp2 parp2,LOC107668981,LOC107738156,LOC107706370 coding downstream 6997 17518812 ~ 17524769 (+)
cbln13 NA coding downstream 24698 17536513 ~ 17537813 (+)
LOC122357951 LOC107591364,LOC107706362,LOC107558878,LOC107659385,LOC107738151,LOC107738210,LOC107591430 coding downstream 119549 17631364 ~ 17652724 (+)
apol1 LOC107557777,LOC107659387,LOC107706364,LOC107668938 coding downstream 170689 17682504 ~ 17687392 (+)
si:rp71-1g18.13 si:rp71-1g18.13,LOC107668936,LOC107738148,LOC107591365,LOC107706363,LOC107659381,LOC107557749 coding downstream 176026 17687841 ~ 17694911 (+)
G13076 NA non-coding upstream 28292 17480223 ~ 17480494 (+)
G13075 NA non-coding upstream 28684 17479724 ~ 17480102 (+)
G13007 insra,LOC107591352,LOC107558844,LOC107706379,LOC107738166,LOC107668948 non-coding upstream 121238 17386062 ~ 17387548 (+)
G12995 NA non-coding upstream 222956 17281260 ~ 17285830 (+)
G12977 LOC107706390 non-coding upstream 235624 17272654 ~ 17273162 (+)
G13049 LOC107738153,LOC107668935,LOC107591359 non-coding downstream 15362 17527177 ~ 17529390 (+)
LOC122357958 NA non-coding downstream 98335 17610150 ~ 17612100 (+)
G13112 cbln10,LOC107738246,LOC107591369,LOC107668921 non-coding downstream 164257 17676072 ~ 17678382 (+)
G13121 NA non-coding downstream 187774 17699589 ~ 17699825 (+)
G13101 LOC107591379,LOC107668986,LOC107704284,LOC107557939,LOC107738140,LOC103040079,LOC108438942 non-coding downstream 194181 17705996 ~ 17768737 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other upstream 139684 17362245 ~ 17369102 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other upstream 468883 17032139 ~ 17039903 (+)
LOC122361622 NA other upstream 732435 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 1052254 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 1239989 16267043 ~ 16268797 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 55026 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 95437 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 267524 17779339 ~ 17782364 (+)
G13137 NA other downstream 272364 17784179 ~ 17816764 (+)
nedd8l nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219 other downstream 358443 17870258 ~ 17871416 (+)

Expression


Co-expression Network