LOC122356618 (LOC107738189,LOC107684434,LOC107591326,LOC107559148,LOC107706401,LOC107659373)


Basic Information

Item Value
gene id LOC122356618
gene name LOC107738189,LOC107684434,LOC107591326,LOC107559148,LOC107706401,LOC107659373
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16843721 ~ 16847555 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255548.1
ACTGGCAAAAGAAAATACGGGACACACGACGTCCCTGCTGTCGTTGCTGTAAGTACTCTCAGATATTTCTCAGCTTGGCACGCGTTACTCTGCCAAGTGTGTTCCCAGATATCAGTTTGACTTTGAtcagtctctttttttgtgttacatGAAGTATACAAGTTAATCATCTAATCTGCCAAAGGCGTTATTCCTAATATCAATAATTGAAGGAGTTTGCTCTGTAAGTGATTTTCTGCAGCTGGCAGTACCTGTGCCACCACTGCATACTTCTAGTGGTGAGTCATATTTTTGGCACAAGATAAGTTGCGTTTTTGCGAAAACGAAAGTGAAAGCATTCTTTTTCCGAGTACAGAGTGAACGCAAGCAAACATTTGTTCGGAGATCACTATGAGCACTGTGACATCAAGCTTGAATAAATGGCAGAAGAATAAGCTCTGCTCATTGCTCAACCATGCTAACCTCTGCCTGCTGTTCAAAGCCAGTGTGCATGGGTTCACTGCTGCTGCATTTCACCAAAAGTGCAATATGCAGGGACCAACTGTCATTGTAGCTTACAATAAGGCTGGATACGTTTTTGGAGCTTTCACTAGCAAGGATTTCCGCCAAACCAACCAAAATACTGCGGATGACAAAGCTTTTCTCTTTAGCTTTAATGACAAAGAAATGAAAGAGGATCCTCTGCGTGTTGTCAGTGGAAATCCCCAGTACGCTTTTACTGACAATGGTCCAAACTTTGGCTCTTTAGTGTTTCTTCACAATAATACAGCCACTGTCCACAGTAATCCAGGAACATACCAGTTTGTTCCACAGAAGATGCATGGGAATAACTTACAGCTGGCAGAATGTGAGGTGTACAGAGTGGAGGATAGCAGAGGACTTATGGAGAAACCATGGAGAAATGTGCAGTGGAACTCTGAgAAGAGACAGGCACACTTGAGCACCATCTCTAGCTGGAAGCCTTCTGTTAACTCAGTCAAACAGGCTCGGATTCTTTTGGTGGGTCCAGTAGGAGCTGGGAAATCAAGCTTCTTCAACTCCATCAACTCTGTGTTCAAAGGTTATGTGAGCATTCAGGCTAACACTGGCATTGCTGGCACCAGTTTGACTACTCAGTTCCGTACCTACTACATCAAGCCAAGCAACAGTGTCACCCATGTCCCCTTTACTCTGTGTGACTCGATGGGTCTGGAGGACGGTGAAAACTCTGGTCTAGATGTAGAGGATTTTACCAGTATTTTGAAAGGTCACGTTCAAGACAAGTATCAGTTTAACCCATTAGTGCCTATACAGCCAGGCTCCCCTCATTTCAATAAATCTCCTGGCTTGAAGGACAAGATTCACTGTGTGGTTTACGTGATTGACATCAGCAGAGTCAAGCTCCTGCCTGACAAAATGATTGAGAAGTTTGTGGCTTTTCGAAAGAAAGCCAACCATCTATCTATTCCTCAGCTGGTTCTGCTTACTAAGGTGGATGAGGCCTGTCCTTTAGTGGCAGAAGACGTGAAAAATGTCTACCAGAGCCACTATATCAACACAATGATGCAGGAGATCAGCACTAAGCTTGGAGTTTCTCTGTCTGCTGTGGTCCCAGTGAAAAACTACTACCAAGAACTGGAAATAGACTCTCAAACTGACATACTGCTTCTGAATGCTGTGGTTCAGATGCTCAGAGCCGCTGAGGGctattttgatgatttttacAATCCAGAAGAAAAGTctgagtaagaaaaaaaaaattcctgtcTGACCAAGAGTTTCTGAACATAGTTAGTAGACTGAAACAAATGGTGTAGAAACAATTTTCcagtaataattacaaaaaaacagtaacagtaaaatattaattaaaattaaaatataattaaatcaagAATAATTAAgtagaaacacaaagaaaaatcgATCTCTATCTTAATCTATTGAATGCTAATATTGTAAGATTGCATTTTCAATcagtgtataataaataaaaaataattatgcttA

Function

NR:

description
PREDICTED: interferon-induced protein 44-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255548.1 True 1989 mRNA 0.41 8 16843721 16847555

Neighbor

gene id symbol gene type direction distance location
LOC122361612 NA coding upstream 120163 16722128 ~ 16723558 (+)
smg7 LOC107563557,LOC107722067,LOC107658366,LOC107557277,LOC107678926 coding upstream 125619 16701077 ~ 16718102 (+)
lamc2 LOC107722066,LOC107658364,LOC107563561,LOC107678924,LOC107726891 coding upstream 154349 16677139 ~ 16689372 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC107722047 coding upstream 173392 16625845 ~ 16670329 (+)
dhx9 dhx9 coding upstream 220688 16613776 ~ 16623033 (+)
ing5b ing5b,LOC107738258,LOC107706410,LOC107591443,LOC107557337,LOC107659430 coding downstream 147134 16994689 ~ 16996615 (+)
pak2a pak2a,LOC107738196,LOC107684413,LOC107659428,LOC107706409,LOC107557297,LOC107591323 coding downstream 149534 16997089 ~ 17009227 (+)
klhl6 klhl6,LOC107591321,LOC107706408,LOC107684416,LOC107558769,LOC107738218 coding downstream 162011 17009566 ~ 17014352 (+)
ptx3b LOC107591444,LOC107738195,LOC107684438,LOC107659376,LOC107559106 coding downstream 177628 17025183 ~ 17029802 (+)
pdcd10b LOC107684411,LOC107557361,LOC105906142,LOC107706406,LOC108411198,LOC100709687 coding downstream 192447 17040002 ~ 17044773 (+)
G12711 NA non-coding upstream 1290 16839571 ~ 16842431 (+)
LOC122356672 NA non-coding upstream 4258 16830108 ~ 16839463 (+)
G12730 NA non-coding upstream 11838 16830649 ~ 16831883 (+)
G12729 LOC107678904 non-coding upstream 14395 16827030 ~ 16829326 (+)
G12669 NA non-coding upstream 59177 16783900 ~ 16784544 (+)
G12753 NA non-coding downstream 45226 16892781 ~ 16893081 (+)
G12759 si:busm1-101l20.6 non-coding downstream 53362 16900917 ~ 16910872 (+)
G12773 NA non-coding downstream 81953 16929508 ~ 16951713 (+)
G12776 NA non-coding downstream 89377 16936932 ~ 16957259 (+)
G12781 NA non-coding downstream 99319 16946874 ~ 16955877 (+)
LOC122361622 NA other upstream 67370 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 387189 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 574924 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 967957 15860179 ~ 15875764 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 1594472 15241797 ~ 15249249 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 184584 17032139 ~ 17039903 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 514690 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 719286 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 759697 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 931784 17779339 ~ 17782364 (+)

Expression


Co-expression Network