LOC122356829 (itgb1b.1,LOC107749109,LOC107563812,LOC107690580,LOC107721729,LOC107660233)


Basic Information

Item Value
gene id LOC122356829
gene name itgb1b.1,LOC107749109,LOC107563812,LOC107690580,LOC107721729,LOC107660233
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21123039 ~ 21130329 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255904.1
GTGTTGGTGTGCGAGGTGTGAGACTGAACTGCTGTACAAGACCTGCACtcacttcacacacactcactcacacacacacttaatagAAACACGgttattttcttttctatgcTGTATCAGAAACAATCTTCATATGCCTGCAGGACTGTTAAGGAATACTGTAACCTGGAGTGTAACTCAAGACAGCAGGAAAAGTTGAgcatataaacatttacttaataaacacacaattcTAGGAAGAGCCTTAGGAGCATGTGTTAAGATGGATATGAAGGTGTTATTAATATCAGCTCTACTAGGATTTGTCTCTCATGTAAGATCAAAAACAGATGGCAATATATGTATTTCTACAAATGCCAAAACATGTGGAGAGTGTATTCAGATCGGGCCACAGTGTGCGTGGTGCAAAGATCCGGATTTCAAACCTTCACGGTGTGATGACAGAGATTCTCTGGAAAAGGCAGGCTGCACTCCACTCGGCATAGAAAACCCTCGAGGAACGGTCACCGTCAACAAGAACAAACCCGTCACGAACCGTAAAGTCGACGGAGGACAGATTCTGAATGAGATCACTCAGATCCAGCCACAGAAACTCACCCTGAACCTCCGATCTGGTGAATCACAGAAGTTTACTCTCAAGTTCAAGAGGGCAGAAGATTATCCTATCGATCTGTACTTTCTGATGGATCTTAGTGACTCCATGCGAAGTAATcttgaaaatgtcaaaaacctGGGAACCGAACTTGCCAAGGCGATGCAGCACATCACGAAAGACCTGCGGATAGGGTTTGGTTCATTCTTGGAGAAACTAGTCATGCCTTACATTTTGATGACACCAAAATATCTGAAGAACCCATGTTTTCCAAATGATTGCTCAGCGCCCTTCAGCTACAAAAATGTTCTGAACTTGACCGACGACGGTGCATTGTTTTCACAAGAGGTTAGCAAGCAGAAAACTTCTGGAAACCTGGACTCTCCAGAGGCAGGATTTGATGCAATCATGCAGGCTGCTGTCTGCACGGAAGTGATCGGCTGGAGGAATGTGACTCGTCTCCTTGTGTTCTCCACGGATGCTGGATTCCATTTTGCTGGAGATGGAAAACTGGGTGGCATTGTTCGTCCAAATGATGGGAGATGCCACCTGGATAATAATATGTACACCATGAGCAACTACTTTGACTACCCCTCCATCTCTCAGCTGGTAGACACACTGAGTGACAACAACATTCAGACCATCTTTGCTGTGACACAACAATTCAGAGATCTTTATCAGgaGCTTTCTGCTCTAATCCCTAAATCAGCAGTGGGGACACTGTCTACCAATTCTTCCAATGTCATCCAGCTCATCATTGATGCATATAATTCTTTGTCCTCAGAGGTCATTCTGGAGAACAGCAAGTTACCTGCTGGTGTGTCCATCTCCTACATCTCCCACTGCAAGAATGGAGTGAGCGAGAAAGGAGAAAATGGGAGAAAGTGCTCCAACATCTCCATTGGGGATGAGGTGGAGTTTGATATAGAAATTACAGCCAAGGGCTGTCCATCTAAAGATAAATCAGAGACTATAAGGATCAACCCGCTGGGCTTCAGCGAGAAGGTGGAAATTGTTCTCAACTTTGTCTGTGAATGTGAGTGTCGAAAAGACAGAATCCTAAACAGTCCGGAGTGTAGCGGCGGCCATGGCACTCTGGAGTGTGGAGTATGCAGGTGTAATGAAGGCCGGTTAGGCAGATTATGCGAGTGCAGTCAAGATGAGTTCCTGACAGATGATCTGGACGCTAACTGCCGCATGAATAATGGGACGGACATCTGCAGCAACAATGGAGAATGTGTCTGTGGAACGTGTGAGTGCAAGAAAAGAGAAAACCCAGAGGAGATATACAGCGGAAAGTTCTGTGAGTGCGACAACTTCAGCTGTGACCGCTCCAACAACAAGCTCTGTGGAGGTCATGGTCGATGTGAGTGCAAAAAGTGTATCTGTGATGCTAACTATAAAGGAAGTGCTTGCGAATGCCCGTTGAACACCTCCACCTGTCTGACCAGTAACGAACTGATCTGTAACGGACGGGGCATTTGCGAGTGCGGCGTGTGTAAATGTACCGACAAAAATTATGAGGGTCCATACTGTGAAATCTGCCCAACCTGCTCCAGAATTTGCAATCAACACAAGGACTGTGTTGAGTGCCTACGATTTGGCAAGGAACGTACATGTCAGAAAGATTGCAAATCCTTCAATATTACATCAGTGAAGACTAAGGAGGAGCTTTATTATCTGAAAAACCAGCCCATCAATCAATGCAAAGAGCGTGACGCTGACGACTGCTGGTTCTACTTTACCTACACTACCAAAAGCGATGACAGCATTGACGTCATTGTGGCTGAGAAAAaggAATGTCCCTCTGGCCCTGACATCATTCCCATCGTAGCGGGTGTGGTCGCCGGAATCGTTCTGATTGGTTTAGCACTTCTGCTCATCTGGAAGCTGCTCATGATTATTCATGACCGCAGAGAGTTCGCCAAGTTCGAGAAAGAGAAGATGAATGCCAAATGGGACACAGGTGACAACCCCATCTATAGAAGTGCTGTGACAACTGTGGTGAACCCCAAATATGAGGGAAAGTGATTGCATCTTCAGGATGGCTTGCAGCAGTGGACCTCAGCTAGTCTTTGCTTCATCGTCCGGATTTTACATTGGTGACCTGATACCGTATcataaactacatttaatttGGGACAAACTGTGACTTCAGACAAAAACACCTACTTGGATATCAACAGCAATTTTATCGTCCGTTTCAAATtttgactatttatttttttaggtttttcatCCATTATCctgtcaaatgcatttttggatCCAAACCTTAGAGTTGATTAGTTTCCATGTgcttaattatattgtttatattttgtaatgtttatatgtaaatatgaaacTCCTCATTTCCTATGAGATTATGGTTTCCCAGAGCACaagaagtcaaaacaaaatTTACCAacgattattattttttaatttactttctATAAAGCCAATAAAACAGTCTTTCTGTTATTCTTAA

Function

symbol description
itgb1b.1 Predicted to enable collagen binding activity involved in cell-matrix adhesion; fibronectin binding activity; and integrin binding activity. Predicted to contribute to C-X3-C chemokine binding activity and laminin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within cell adhesion. Predicted to be located in several cellular components, including lamellipodium; melanosome; and ruffle membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Is expressed in several structures, including heart; liver; notochord; periderm; and pleuroperitoneal region. Orthologous to human ITGB1 (integrin subunit beta 1).

NR:

description
PREDICTED: integrin beta-1-like isoform X1

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K05719 ITGB1, CD29; integrin beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255904.1 True 3065 mRNA 0.44 16 21123039 21130329

Neighbor

gene id symbol gene type direction distance location
itgb1b.2 LOC107749109,LOC107563812 coding upstream 285 21116469 ~ 21122754 (+)
LOC122359068 itgb1b,LOC107749113,LOC107563813,LOC107659805,LOC107690578 coding upstream 7040 21099685 ~ 21115999 (+)
LOC122362210 nrp1b,LOC107659377,LOC107749105,LOC107721698,LOC107690577 coding upstream 27474 21073085 ~ 21095565 (+)
pard3ab pard3,LOC107690576,LOC107659281,LOC107557790 coding upstream 78626 20975539 ~ 21044413 (+)
efr3a efr3a,LOC107721726,LOC107749108,LOC107663339 coding upstream 235495 20854977 ~ 20887544 (+)
epc1b epc1b,LOC107563811,LOC107690579 coding downstream 680 21131009 ~ 21145290 (+)
arhgap12a LOC107659443,LOC107749196,LOC107557799 coding downstream 54880 21185209 ~ 21204873 (+)
nlrb5 NA coding downstream 96994 21227323 ~ 21246000 (+)
zgc:152670 NA coding downstream 260789 21391118 ~ 21397540 (+)
kcnab1b kcnab1b,LOC107600068,LOC107721779,LOC107557878,LOC107692887,LOC107749128,LOC108428302,LOC108280191,LOC104919203 coding downstream 293497 21423826 ~ 21462693 (+)
G13976 NA non-coding upstream 156811 20961693 ~ 20966228 (+)
G13980 NA non-coding upstream 165903 20955935 ~ 20957136 (+)
G13964 NA non-coding upstream 176773 20899564 ~ 20946266 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding upstream 505379 20616158 ~ 20617660 (+)
G13863 NA non-coding upstream 527946 20591718 ~ 20595093 (+)
G13992 NA non-coding downstream 17851 21148180 ~ 21148512 (+)
G13993 NA non-coding downstream 18892 21149221 ~ 21150007 (+)
G13994 NA non-coding downstream 20329 21150658 ~ 21151136 (+)
G13995 LOC107749107,LOC107659422,LOC107563825 non-coding downstream 21774 21152103 ~ 21153782 (+)
G13983 kif5b,LOC108232928,LOC106522897,LOC106906931,LOC103138015,LOC106962517,LOC103479480,LOC101155960 non-coding downstream 35759 21166088 ~ 21168887 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 614648 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 637821 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 649515 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 693691 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2960897 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 33613 21163942 ~ 21164822 (+)
G14211 NA other downstream 177078 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 350805 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 402916 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 584354 21714683 ~ 21716290 (+)

Expression


Co-expression Network