itgb1b.2 (LOC107749109,LOC107563812)


Basic Information

Item Value
gene id itgb1b.2
gene name LOC107749109,LOC107563812
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21116469 ~ 21122754 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255911.1
GTTATCTTGTTTTGTGTGCCACTTCGGAAACATTCTTCATATGCCTGCAGGACTGTTAAGGTGTACTGTAACCTGGAGCGTAACTCAAGACGTCAGGAAAAGTTGAGCATATAGATAATTACTTTATAAATTGATTTTTCGAAAGAGCCTTAGGGGTTAAGATGGAAATAAAGGTGCTATTAATATCGGCTCTACTAGGATTCGTCTCTCGTGTCAGATCAAACACAGATGGCAATATATGTATTTCTGCAAAAGCCAAAACATGTGGAGAGTGTATTCAGATCGGGCCACAGTGTGCGTGGTGCAAAGATCCTGATTTCAAACCTTCACGGTGTGATGACAGAGATTCTCTGGAAAAGGCAGGCTGCACTCCACTCGGCATAGAAAACCCTCGAGGAACGGTCACCGTCGACAAGAACAAACCCGTCACGAACCGTAAAGTCGACGGAGGACAGATTCTGAATGAGATCACTCAGATCCAGCCACAGAAACTCACCCTGAACCTCCGATCTGGTGAATCACAGAAGTTTACTCTCAAATTCAAGAGGGCACAAGATTATCCCATCGATCTGTACTTTCTGATGGACCTCAGCAACCCTAATCTTGAGAATGTCAAGAACCTGGTAACCGAACTTGTCAAGGAGATGCAGCACATCACGAAAGACCTGCGGATAGGTTTTGGTTCATTCTCGGTGAAACCTTTCATTCCGGAAACCCCAACGGATCTGAAGAGCCCATGTTCTCCAAACAATTGCAAACCCTCCTTCAGCTACGTAAATGTCTTGAGCTTGACAGATGACACCACATTGTTCACCCAAGCGGTCAGCAAGCAGAAAACCTCTGGAAACCTAGGCTCTTCAGAGGCAGGATTTGAAGCCATCATGCAGGCTGCTGTCTGCACGGAAGTGATCGGCTGGAGGAATGTGACTCGTCTCCTTGTGTTCTCCACGGATGCTGAATTACATTTTGCTGAAGATGAAAAACTGGGTTGCATTGTTCATCCAAATGCCGGGAAATGCCACCTGGAGAATAATGTGTACACCATGAATAACTACTTTgACCCCTCCATCTCTCAGCTGGTAGACACACTGAGTGACAACAACATTCAGACCATCTTTGCTGTGAAACATCAATTCAGAGATCGTTATCAGgAGCTCTCTGCTCTAATTCCTAAATCAGCAGTGGGGACCAATTCATCCAATGTCATTCAGCTCATCATTGATGCACATAACTCTTTGTCCTCACAGGTCATTCTGGAGAACAGCAAGTTGCCTGATGGTGTGTCCATTTCCTACATCTCTCACTGTAAGAAAGGAGTGTGCGAGGAGAAGATGGAAGATGGAAGAAAATGCTCTGCCATCTCCATTGGGGATGAGGTGGAGTTTGATATAGAAATAACAGCTACTGGCTGTCCATCTAAAGATAAATCAGAGACCATAAAGATCAAGCCGCTGGGCTTCACTGAGGAGGTGGAAATCATCCTCAACTTTATCCTTGAATGTGAGTGTCGTAAAGAAGGGATCCTAAACAGTCCGGAGTGTAGCGGCGGCCATGGCACTCTGGAGTGTGGAGTATGCAGGTGTAATAAAGGGTGGTCAGGCAGATTATGTGAGTGCAGTCAAGATGAGTTCCTGACAGATGATCTGGACGCTAACTGCCGCATGAATAATGGGACGGACATCTGCAGCAACAATGGAGAATGTGTCTGTGGAACGTGTGAGTGCAAGAAAAGAGAAAACCCAGAGGAGATATACAGCGGAAAGTTCTGTGAGTGCGACAACTTCAACTGTGACCGCTCCAACAACAAGCTCTGTGGAGGTCATGGTCGGTGTGAGTGCAGGAAGTGTATCTGTGATCCTGACTATACAGGCAGCGCGTGTGACTGCAGTCTGGACACCTCCACCTGTCTGGCCAGTAACAAGCTGATCTGTAACGGACAGGGCATCTGCGAGTGTGGCGTGTGTAAATGTACGAATCCAAAGTTTCAGGGTCCAACCTGTGAAATCTGCCCAACCTGCTCCAGAGCCTGACTTTCAATTACTTTCTTTGTTTGAATGCAAGTGAATGGTTAGCaaagttcttttaaatgtaGTCACAATTATAAACGACGCTTATCAGATTCCGAGAAAATGGAAAATTATAGCCATAAGCAAAAACCATTGggatttaaagggttagttcataaCATGCAAATAACATGTATTTACTATGGGGCTTTTTTTGCTGGGAACATtttagttgtgttgctgtctatggagtgtcagaaagctctctgattacataaataaaaattcttaatttgtgtttcaaagatgaacgaaagtcttacgggtttggaacgatatgagggtaattaatgacagaattttaattttggggtatACTAATCTTTTAAGCACCAATGACCCACATGCATGATTAGCAATCCAACTAAAATTTGAGACAAATTATGTCAACTGTCGACAAACCCtcttcattttgtttctgttaAAAGATGTGATCAGGAGATTTGTGATGTGTCATAGGATGTCATAAGTCaacatgaaaatgttaattgctGTGCTATGCTTgcatattatgttattttaacctattttaacatatttacacacacgATATTATTGTAAAACTGAGAGTGTACTATATAGAACAAACTGCCATTTTAtcatcactaaaacaacatgtTAGAAACCAAATACATTCTATactttttatgactttttttctgtgttaattatgAATGTGAGAATGTttcataattttacaaataaactggtttaaagca
>XM_043255915.1
tGTTATCTTGTTTTGTGTGCCACTTCGGAAACATTCTTCATATGCCTGCAGGACTGTTAAGGTGTACTGTAACCTGGAGCGTAACTCAAGACGTCAGGAAAAGTTGAGCATATAGATAATTACTTTATAAATTGATTTTTCGAAAGAGCCTTAGGGGTTAAGATGGAAATAAAGGTGCTATTAATATCGGCTCTACTAGGATTCGTCTCTCGTGTCAGATCAAACACAGATGGCAATATATGTATTTCTGCAAAAGCCAAAACATGTGGAGAGTGTATTCAGATCGGGCCACAGTGTGCGTGGTGCAAAGATCCTGATTTCAAACCTTCACGGTGTGATGACAGAGATTCTCTGGAAAAGGCAGGCTGCACTCCACTCGGCATAGAAAACCCTCGAGGAACGGTCACCGTCGACAAGAACAAACCCGTCACGAACCGTAAAGTCGACGGAGGACAGATTCTGAATGAGATCACTCAGATCCAGCCACAGAAACTCACCCTGAACCTCCGATCTGGTGAATCACAGAAGTTTACTCTCAAATTCAAGAGGGCACAAGATTATCCCATCGATCTGTACTTTCTGATGGACCTCAGCAACCCTAATCTTGAGAATGTCAAGAACCTGGTAACCGAACTTGTCAAGGAGATGCAGCACATCACGAAAGACCTGCGGATAGGTTTTGGTTCATTCTCGGTGAAACCTTTCATTCCGGAAACCCCAACGGATCTGAAGAGCCCATGTTCTCCAAACAATTGCAAACCCTCCTTCAGCTACGTAAATGTCTTGAGCTTGACAGATGACACCACATTGTTCACCCAAGCGGTCAGCAAGCAGAAAACCTCTGGAAACCTAGGCTCTTCAGAGGCAGGATTTGAAGCCATCATGCAGGCTGCTGTCTGCACGGAAGTGATCGGCTGGAGGAATGTGACTCGTCTCCTTGTGTTCTCCACGGATGCTGAATTACATTTTGCTGAAGATGAAAAACTGGGTTGCATTGTTCATCCAAATGCCGGGAAATGCCACCTGGAGAATAATGTGTACACCATGAATAACTACTTTgACCCCTCCATCTCTCAGCTGGTAGACACACTGAGTGACAACAACATTCAGACCATCTTTGCTGTGAAACATCAATTCAGAGATCGTTATCAGgAGCTCTCTGCTCTAATTCCTAAATCAGCAGTGGGGACCAATTCATCCAATGTCATTCAGCTCATCATTGATGCACATAACGTCATTCTGGAGAACAGCAAGTTGCCTGATGGTGTGTCCATTTCCTACATCTCTCACTGTAAGAAAGGAGTGTGCGAGGAGAAGATGGAAGATGGAAGAAAATGCTCTGCCATCTCCATTGGGGATGAGGTGGAGTTTGATATAGAAATAACAGCTACTGGCTGTCCATCTAAAGATAAATCAGAGACCATAAAGATCAAGCCGCTGGGCTTCACTGAGGAGGTGGAAATCATCCTCAACTTTATCCTTGAATGTGAGTGTCGTAAAGAAGGGATCCTAAACAGTCCGGAGTGTAGCGGCGGCCATGGCACTCTGGAGTGTGGAGTATGCAGGTGTAATAAAGGGTGGTCAGGCAGATTATGTGAGTGCAGTCAAGATGAGTTCCTGACAGATGATCTGGACGCTAACTGCCGCATGAATAATGGGACGGACATCTGCAGCAACAATGGAGAATGTGTCTGTGGAACGTGTGAGTGCAAGAAAAGAGAAAACCCAGAGGAGATATACAGCGGAAAGTTCTGTGAGTGCGACAACTTCAACTGTGACCGCTCCAACAACAAGCTCTGTGGAGGTCATGGTCGGTGTGAGTGCAGGAAGTGTATCTGTGATCCTGACTATACAGGCAGCGCGTGTGACTGCAGTCTGGACACCTCCACCTGTCTGGCCAGTAACAAGCTGATCTGTAACGGACAGGGCATCTGCGAGTGTGGCGTGTGTAAATGTACGAATCCAAAGTTTCAGGGTCCAACCTGTGAAATCTGCCCAACCTGCTCCAGAGCCTGACTTTCAATTACTTTCTTTGTTTGAATGCAAGTGAATGGTTAGCaaagttcttttaaatgtaGTCACAATTATAAACGACGCTTATCAGATTCCGAGAAAATGGAAAATTATAGCCATAAGCAAAAACCATTGggatttaaagggttagttcataaCATGCAAATAACATGTATTTACTATGGGGCTTTTTTTGCTGGGAACATtttagttgtgttgctgtctatggagtgtcagaaagctctctgattacataaataaaaattcttaatttgtgtttcaaagatgaacgaaagtcttacgggtttggaacgatatgagggtaattaatgacagaattttaattttggggtatACTAATCTTTTAAGCACCAATGACCCACATGCATGATTAGCAATCCAACTAAAATTTGAGACAAATTATGTCAACTGTCGACAAACCCtcttcattttgtttctgttaAAAGATGTGATCAGGAGATTTGTGATGTGTCATAGGATGTCATAAGTCaacatgaaaatgttaattgctGTGCTATGCTTgcatattatgttattttaacctattttaacatatttacacacacgATATTATTGTAAAACTGAGAGTGTACTATATAGAACAAACTGCCATTTTAtcatcactaaaacaacatgtTAGAAACCAAATACATTCTATactttttatgactttttttctgtgttaattatgAATGTGAGAATGTttcataattttacaaataaactggtttaaagca

Function

NR:

description
PREDICTED: integrin beta-1-like isoform X4

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255911.1 True 2785 mRNA 0.42 13 21116470 21122754
XM_043255915.1 False 2771 mRNA 0.42 13 21116469 21122754

Neighbor

gene id symbol gene type direction distance location
LOC122359068 itgb1b,LOC107749113,LOC107563813,LOC107659805,LOC107690578 coding upstream 470 21099685 ~ 21115999 (+)
LOC122362210 nrp1b,LOC107659377,LOC107749105,LOC107721698,LOC107690577 coding upstream 20904 21073085 ~ 21095565 (+)
pard3ab pard3,LOC107690576,LOC107659281,LOC107557790 coding upstream 72056 20975539 ~ 21044413 (+)
efr3a efr3a,LOC107721726,LOC107749108,LOC107663339 coding upstream 228925 20854977 ~ 20887544 (+)
basp1 basp1 coding upstream 324611 20778714 ~ 20791858 (+)
LOC122356829 itgb1b.1,LOC107749109,LOC107563812,LOC107690580,LOC107721729,LOC107660233 coding downstream 285 21123039 ~ 21130329 (+)
epc1b epc1b,LOC107563811,LOC107690579 coding downstream 8255 21131009 ~ 21145290 (+)
arhgap12a LOC107659443,LOC107749196,LOC107557799 coding downstream 62455 21185209 ~ 21204873 (+)
nlrb5 NA coding downstream 104569 21227323 ~ 21246000 (+)
zgc:152670 NA coding downstream 268364 21391118 ~ 21397540 (+)
G13976 NA non-coding upstream 150241 20961693 ~ 20966228 (+)
G13980 NA non-coding upstream 159333 20955935 ~ 20957136 (+)
G13964 NA non-coding upstream 170203 20899564 ~ 20946266 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding upstream 498809 20616158 ~ 20617660 (+)
G13863 NA non-coding upstream 521376 20591718 ~ 20595093 (+)
G13992 NA non-coding downstream 25426 21148180 ~ 21148512 (+)
G13993 NA non-coding downstream 26467 21149221 ~ 21150007 (+)
G13994 NA non-coding downstream 27904 21150658 ~ 21151136 (+)
G13995 LOC107749107,LOC107659422,LOC107563825 non-coding downstream 29349 21152103 ~ 21153782 (+)
G13983 kif5b,LOC108232928,LOC106522897,LOC106906931,LOC103138015,LOC106962517,LOC103479480,LOC101155960 non-coding downstream 43334 21166088 ~ 21168887 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 608078 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 631251 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 642945 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 687121 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2954327 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 41188 21163942 ~ 21164822 (+)
G14211 NA other downstream 184653 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 358380 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 410491 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 591929 21714683 ~ 21716290 (+)

Expression


Co-expression Network