cdcp2 (cdcp2)


Basic Information

Item Value
gene id cdcp2
gene name cdcp2
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7157934 ~ 7161192 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255983.1
ACCACCTATCCAGTTGCCCCAGAACGAGAGGCCACAGAATGAGGAGCTTTAATATTACTTCTACTCTCTGAACACTGCAGGACAGTATGCGCAGAAGAAATTAAACACTACATACTACAAAAAACAACATGGTTTTAAGGATGACTGTCTTCATTCATGTTTTGTTCATTGCTGGAAAAGTCACCTCCAAAAAAGGTGTTAAATGTGGAGGAATCCTCTCTGCAAGCAGTGGCAATGTGTCAAGCCCTAATTTTCCAGGCTTTTATCCTTACGACACTGAATGCACCTGGCTGATTGTGGTGTCTGAAGGCTCCTCCGTACTCTTAACCTTCCATCACTTTGAGCTGGAATACCATACAGACTGTGCTTATGACTACATCAAGATATACAACGGCATCTCTGAGGATGAAGGCAACCTTCTTGGGAAATTCTGTGGAGATGTGTCTCCTCCTCAGTTCAGCTCGTCCTGGAATGTCATGTCCATCATCTTCCATTCAGACCGTCATGTTGCACGCAAGGGTTTCTCGGTTGGCTATAGGAAAGATATGTGTGGTGGGGTTTTGACCGGTCTATCGGGGGTCATCTCAAGCCCAGGTTATCCACTGGAGTACAACAACAATGCCGATTGCTCCTGGACTGTACATGTGTCCAATCGGAGTGTCGTGAGCCTGGTGTTTCTTGACTTCCAGTTAGAAAACAATGAGGGGTGCAATTTTGACTACGTCGCTCTCTTTGATGGCCCCTCTGTTAAACACCGTCACCTGGGCAATTACTGTGGTAGTGAGAGACCTCCCAACACTGTCACCACATCAAACCATCTGCTTGTGGTCTTCAAATCTGACTTCAATATTGGTGGGAGAGGTTTTAAAGCCTACTACTATTCAGgaGAGTGCCAGCAAATTCTCAAAAATATCAGTGGGAACTTAACTAGCCCTCACTACCCAAACATCTACCCCAACAACATCAACTGTCACTGGACAATTACTTTAGCAGCTGGGTACAGGATTAAGCTATTTCTCCCCTTTCTGGAGCTTGAGGATCGAAACAGCCTGACTGACATGTGCGACTATGACTCTTTGTCTGTGTATGATGGGGACAGCGACACGGACAATCTATTGGGTCAGTGGTGTGGCAGTGAACAGCCTCCGTCTTTGACCTCTAAGGGGAATAAACTATTGGTTGTTCTCAGCACTGATCGGAACTCTGCCTTTACGGGATTCACAGCCTCCTATATAGGAGTGGTGCCAGTCAATGTAAGCTGCACCCGAACTGAGTTTCAGATTCAGATCTCCAGAGAGGCTTTGCCCCAGCTGGACCGTGAGAATATTTATCTTGGGAATCCATCCTGTTCTGCCCAGCTGACAGAAACATCCTACAAAATTCTAGCCCGTTTTGTCAACTGTGGAACTGCTGGACAGAAACGTCAAAACATCACCATGCTTGTGAACTCACTTTATATTGACTACTCCGATGGGCCGCAGCAGAATATTCAGGAGTATGAGGTGCAATGTGATGCCCAGAGGAAGGTGGCCATGGTCAACATCATCTCGGTTGAGGAGCGTAACCGGCTTAATGAACTGGCCCGTTTGGCCAAGGAATCAAACAACAAGAATGCTGATGAAGAAAGTGAACCTCACGATACCAGTGATATCATCTTCATCAGCATCTGTGTTCTCGCTGTGATCCTCATGTTAATTGCTATTGTGTGGCTGGTGCTTCTATAGGTGTGCCAC

Function

symbol description
cdcp2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CDCP2 (CUB domain containing protein 2).

NR:

description
CUB domain-containing protein 2, partial

GO: NA

KEGG:

id description
K24792 CDCP2; CUB domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255983.1 True 1733 mRNA 0.46 6 7157934 7161192

Neighbor

gene id symbol gene type direction distance location
ssbp3a ssbp3,ssbp3a coding upstream 6163 7126271 ~ 7151771 (+)
fam151a fam151a coding upstream 46662 7106211 ~ 7111272 (+)
cryz cryz,LOC107553670 coding upstream 59758 7084134 ~ 7098176 (+)
penka LOC107748924,LOC107675675,LOC107573453 coding upstream 184763 6970493 ~ 6973171 (+)
bpnt2 impad1,LOC107663252,LOC107741594 coding upstream 278285 6856244 ~ 6879649 (+)
cdc7 cdc7,LOC107579524 coding downstream 3513 7164705 ~ 7170115 (+)
rpap2 rpap2,LOC107716948,LOC107716950 coding downstream 15743 7176935 ~ 7185014 (+)
rpl5a rpl5,LOC107568084,LOC107694375,LOC107743362,LOC107716952,LOC103368809 coding downstream 42109 7203301 ~ 7206402 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding downstream 63898 7225090 ~ 7236113 (+)
ccdc18 ccdc18,LOC107716953,LOC107658134,LOC107568077 coding downstream 75747 7236939 ~ 7254571 (+)
G9940 NA non-coding upstream 106940 7050725 ~ 7050994 (+)
LOC122325829 NA non-coding upstream 114846 7042831 ~ 7043088 (+)
LOC122324999 NA non-coding upstream 121436 7036056 ~ 7036498 (+)
G9930 NA non-coding upstream 147340 7009360 ~ 7010594 (+)
G9928 NA non-coding upstream 156455 7001060 ~ 7001479 (+)
G10012 NA non-coding downstream 28463 7189655 ~ 7196400 (+)
G10013 NA non-coding downstream 35898 7197090 ~ 7199537 (+)
G10020 fam69a,fam69aa,LOC107716951,LOC107568082,LOC107694372,LOC108436064 non-coding downstream 45315 7206507 ~ 7209934 (+)
G10021 NA non-coding downstream 49546 7210738 ~ 7210938 (+)
G10094 NA non-coding downstream 259250 7420442 ~ 7421878 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 52142 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 170815 6986298 ~ 6987119 (+)
G9889 NA other upstream 465559 6691668 ~ 6692375 (+)
G9887 NA other upstream 467155 6690372 ~ 6690779 (+)
sst2 LOC107549725,LOC107710806 other upstream 789980 6367177 ~ 6367954 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other downstream 124478 7285670 ~ 7300101 (+)
G10108 NA other downstream 343430 7504622 ~ 7582385 (+)
G10212 NA other downstream 945673 8106865 ~ 8107777 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 2001419 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 2585378 9746570 ~ 9751212 (+)

Expression


Co-expression Network