dmbx1a (dmbx1a,LOC107588924,LOC107743378,LOC107700538,LOC107551711,LOC107684938,LOC108442545)


Basic Information

Item Value
gene id dmbx1a
gene name dmbx1a,LOC107588924,LOC107743378,LOC107700538,LOC107551711,LOC107684938,LOC108442545
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7340271 ~ 7346655 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256186.1
AGAGCGCGCAGGGAACGGTTTGGAGTCGCTTGATACTTAGCGGATACATTTGAATGGGCTCTTAGATTTTGAAAAACGCGATAAGGACATCTGGGAAATACTACGGGCTACGAGCGACAAAATACCAAGTGACAGTCTAAAACACTGGATAAAGGACAAGACTGAGatatttttgaAACATGCAACACTACGGAGTGAACGGATACTCTCTCCACGCCATGAACTCACTGAGCGCCATGTACAACCTGCATCAACAGGCGGCGCAACAGGCGCAGCACGCGCCAGACTATCGGCCGTCCGTTCACGCGCTCACGCTCGCGGAGAGACTGGCTGGCTGTACATTTCAAGATATCATACTTGAGGCTCGCTACGGCTCTCAACATCGCAAACAACGCCGCAGTCGCACCGCTTTCACGGCCCAGCAACTGGAGGCGTTGGAGAAGACCTTCCAGAAGACGCACTATCCTGATGTAGTGATGCGGGAGCGCCTGGCCATGTGCACCAACCTACCTGAGGCGCGCGTACAGGTATGGTTCAAGAACCGCCGTGCAAAGTTTCGTAAGAAGCAGCGAAGCCTTCAAAAGGAGCAACTGCAGAAGCAGAAAGATGTCTCGACAGATGGGCCCCTGACAACGAACGATAAGGACGATGCCCCTTCCAGCATAAATCTTGAGAACCAGCCACCttcgtcatcatcatcttcctcctccATGGAAGCAGAGGCGGCTCCTCACGCGCTGGGATCAGAACTTAGCGTTGAGCTTAATGTGACATCGGCAGAGCAGTCAGGCAGCGAGTCGGCCACAGAGGACAACGCGACTGACAAGGAAGAGGAGATGAAGCAACACAGAGAAGATCTGAAGGTTGAGAAAGAACCAGCACCCGGAAACATGTCCCCACTTTGCAAACGTCTCAGCCCCAAACCAGATTCTCCTCTGGGCTCCCCGGCTATCTCATCTTCTTCTAGCGGGGTGACTGGCGGGATCTCTCAGAGTCACTCATACTCCTCGTCGCCGCTCAGCCTCTTCCGTCTGCAGGAGCAGTTTCGCCAGCACATGGCAGCTACCAACAACCTGGTTCATTATCCGTCTTTTGACATGGCAACCCCGTCGTCTATACCATACCTGGGCATGAATGTCAACATGCCAGCACCCCTGGGCTCCCTCCCCTGTCAGTCATACTATCAGTCCCTATCTCACCATGCgcaacaggtttggaacagcccTCTGCTGCAGGCCTCTGGAGGTCTTCCTAGCCACAACAGCAAGACCACCAGCATTGAGAACCTACGCTTGCGGGCGAAGCAGCATGCGGCATCACTGGGCCTGGACACGCTGCCCAACTGAGCAGGAGACTGAAACCTACCTGAGCAAGGGAACATCTCTCTACCACTACTAACATGCCACCTGGACTTCTAAAATTAGGGCCAACACTCAGAAAAGTATGGCACTGAGGTTGAGACTAGTAAAAATCTCAGACTCTTTTAGAGGGCTTGTTGTTTCGAGGATTAAATAGACAATAAAACGATGGTCTAATTTAATTCATCATGATATTACATTTGTCAGCTTTGCATAAAATACAGACAGGCCATGAATTAgatttagtgttatttatatgttttggATGGGCATAGATGTTTGATATAAGCACTTTTTGGAGATGATCTCAGCCAGTTGCATGCACTGTACACCAGAATCTGAAAATAACtttcttttaattcaattatCGTGGTTCTCAAAACACACATCACACaagttgtaaatgtaaatcttgCACAACTAAATAGATTAATTAAACCTAACCTGTTTAATGGTCAGGATTAAACCACGGTAAATTGAGGATGGTTGGGTAATGAGAAAATTGTTTCATTGACTACATATGCAAAGCTTTTAATTACATGCAGCCTCAGGCAGTGGAAGAAATGCAATTATAGACCATGCATATCATTGGAGATCGCCATATTAACACTCGGAGGGAAAATACTCTGAAGAAAACTAGTGCTTAAGTGCATATAAATGTTGCAACTGGAAACAATTCTGAATAGCGGTCAAATGCCGAGTTCTCAAGTAGAAAGCAAAGCACTTCTATGTATGGCAGCTTTTTCTCCCCCCTCTCTGCTCATTCTTACACTCTCAGTGCTGAGCTCTCATTGTGTttgtaaagtattttaatatgtacaatacAAAGTCTATCTATAAATGTTTACTGGTAAGGCAAATGTTAAAGTTCTATGTTTTAGATTGAGAAGAATTTAACCCTGTGATGATTCTGGTAGCTGTCCCTTTGTAAGATTGTACTGGGTGGGCCGCACAGCCCGCCTGCGTCTTCCCCCAGATTATTTAACCTATACAGTCTGGTCGTCTTTGTAACTCTTTCATTGTGAACATCAATATACAGTCACTCACGACATCACACGAAGTGGTGAATTTGTAGCCTATATTGGTGGAGAGTGTTCCGGAAGTATACACATCTTTCCCTATGTCAGTTGTAGATTTAAaaacttgtaaaataaaacttcaataaaacattGCTTGGGCatcttta
>XM_043256194.1
AGAGCGCGCAGGGAACGGTTTGGAGTCGCTTGATACTTAGCGGATACATTTGAATGGGCTCTTAGATTTTGAAAAACGCGATAAGGACATCTGGGAAATACTACGGGCTACGAGCGACAAAATACCAAGTGACAGTCTAAAACACTGGATAAAGGACAAGACTGAGatatttttgaAACATGCAACACTACGGAGTGAACGGATACTCTCTCCACGCCATGAACTCACTGAGCGCCATGTACAACCTGCATCAACAGGCGGCGCAACAGGCGCAGCACGCGCCAGACTATCGGCCGTCCGTTCACGCGCTCACGCTCGCGGAGAGACTGGCTGATATCATACTTGAGGCTCGCTACGGCTCTCAACATCGCAAACAACGCCGCAGTCGCACCGCTTTCACGGCCCAGCAACTGGAGGCGTTGGAGAAGACCTTCCAGAAGACGCACTATCCTGATGTAGTGATGCGGGAGCGCCTGGCCATGTGCACCAACCTACCTGAGGCGCGCGTACAGGTATGGTTCAAGAACCGCCGTGCAAAGTTTCGTAAGAAGCAGCGAAGCCTTCAAAAGGAGCAACTGCAGAAGCAGAAAGATGTCTCGACAGATGGGCCCCTGACAACGAACGATAAGGACGATGCCCCTTCCAGCATAAATCTTGAGAACCAGCCACCttcgtcatcatcatcttcctcctccATGGAAGCAGAGGCGGCTCCTCACGCGCTGGGATCAGAACTTAGCGTTGAGCTTAATGTGACATCGGCAGAGCAGTCAGGCAGCGAGTCGGCCACAGAGGACAACGCGACTGACAAGGAAGAGGAGATGAAGCAACACAGAGAAGATCTGAAGGTTGAGAAAGAACCAGCACCCGGAAACATGTCCCCACTTTGCAAACGTCTCAGCCCCAAACCAGATTCTCCTCTGGGCTCCCCGGCTATCTCATCTTCTTCTAGCGGGGTGACTGGCGGGATCTCTCAGAGTCACTCATACTCCTCGTCGCCGCTCAGCCTCTTCCGTCTGCAGGAGCAGTTTCGCCAGCACATGGCAGCTACCAACAACCTGGTTCATTATCCGTCTTTTGACATGGCAACCCCGTCGTCTATACCATACCTGGGCATGAATGTCAACATGCCAGCACCCCTGGGCTCCCTCCCCTGTCAGTCATACTATCAGTCCCTATCTCACCATGCgcaacaggtttggaacagcccTCTGCTGCAGGCCTCTGGAGGTCTTCCTAGCCACAACAGCAAGACCACCAGCATTGAGAACCTACGCTTGCGGGCGAAGCAGCATGCGGCATCACTGGGCCTGGACACGCTGCCCAACTGAGCAGGAGACTGAAACCTACCTGAGCAAGGGAACATCTCTCTACCACTACTAACATGCCACCTGGACTTCTAAAATTAGGGCCAACACTCAGAAAAGTATGGCACTGAGGTTGAGACTAGTAAAAATCTCAGACTCTTTTAGAGGGCTTGTTGTTTCGAGGATTAAATAGACAATAAAACGATGGTCTAATTTAATTCATCATGATATTACATTTGTCAGCTTTGCATAAAATACAGACAGGCCATGAATTAgatttagtgttatttatatgttttggATGGGCATAGATGTTTGATATAAGCACTTTTTGGAGATGATCTCAGCCAGTTGCATGCACTGTACACCAGAATCTGAAAATAACtttcttttaattcaattatCGTGGTTCTCAAAACACACATCACACaagttgtaaatgtaaatcttgCACAACTAAATAGATTAATTAAACCTAACCTGTTTAATGGTCAGGATTAAACCACGGTAAATTGAGGATGGTTGGGTAATGAGAAAATTGTTTCATTGACTACATATGCAAAGCTTTTAATTACATGCAGCCTCAGGCAGTGGAAGAAATGCAATTATAGACCATGCATATCATTGGAGATCGCCATATTAACACTCGGAGGGAAAATACTCTGAAGAAAACTAGTGCTTAAGTGCATATAAATGTTGCAACTGGAAACAATTCTGAATAGCGGTCAAATGCCGAGTTCTCAAGTAGAAAGCAAAGCACTTCTATGTATGGCAGCTTTTTCTCCCCCCTCTCTGCTCATTCTTACACTCTCAGTGCTGAGCTCTCATTGTGTttgtaaagtattttaatatgtacaatacAAAGTCTATCTATAAATGTTTACTGGTAAGGCAAATGTTAAAGTTCTATGTTTTAGATTGAGAAGAATTTAACCCTGTGATGATTCTGGTAGCTGTCCCTTTGTAAGATTGTACTGGGTGGGCCGCACAGCCCGCCTGCGTCTTCCCCCAGATTATTTAACCTATACAGTCTGGTCGTCTTTGTAACTCTTTCATTGTGAACATCAATATACAGTCACTCACGACATCACACGAAGTGGTGAATTTGTAGCCTATATTGGTGGAGAGTGTTCCGGAAGTATACACATCTTTCCCTATGTCAGTTGTAGATTTAAaaacttgtaaaataaaacttcaataaaacattGCTTGGGCatcttta

Function

symbol description
dmbx1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in brain development; eye development; and negative regulation of transcription, DNA-templated. Acts upstream of or within several processes, including nervous system development; regulation of neural retina development; and retina development in camera-type eye. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural keel; anterior neural rod; immature eye; nervous system; and presumptive diencephalon. Orthologous to human DMBX1 (diencephalon/mesencephalon homeobox 1).

NR:

description
PREDICTED: diencephalon/mesencephalon homeobox protein 1 isoform X1

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0030901 midbrain development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24893 DMBX1; diencephalon/mesencephalon homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256186.1 True 2544 mRNA 0.46 5 7340271 7346655
XM_043256194.1 False 2529 mRNA 0.46 5 7340271 7346655

Neighbor

gene id symbol gene type direction distance location
wls wls,LOC107684934 coding upstream 56461 7269715 ~ 7283810 (+)
scinlb LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC108280481,LOC106568976 coding upstream 71866 7257164 ~ 7268405 (+)
ccdc18 ccdc18,LOC107716953,LOC107658134,LOC107568077 coding upstream 85700 7236939 ~ 7254571 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding upstream 104158 7225090 ~ 7236113 (+)
rpl5a rpl5,LOC107568084,LOC107694375,LOC107743362,LOC107716952,LOC103368809 coding upstream 133869 7203301 ~ 7206402 (+)
ptger4c ptger4c,LOC107716941,LOC107700513,LOC107743379,LOC107684935,LOC107564388,LOC107551710 coding downstream 41763 7388418 ~ 7391035 (+)
glula LOC107563291,LOC107710552,LOC107700548,LOC107732203,LOC107553252 coding downstream 968476 8315131 ~ 8318467 (+)
elovl1a elovl1a,LOC107553254,LOC107732201,LOC107700551,LOC107710545,LOC108438881,LOC103047025 coding downstream 1026583 8373238 ~ 8382443 (+)
cc2d1b LOC107563292,LOC107710553,LOC107700553,LOC107677533 coding downstream 1040222 8386877 ~ 8403214 (+)
clcn2a clcn2,clcn2a,LOC107732945,LOC107710554,LOC107677884 coding downstream 1093224 8439879 ~ 8486904 (+)
G10021 NA non-coding upstream 129333 7210738 ~ 7210938 (+)
G10020 fam69a,fam69aa,LOC107716951,LOC107568082,LOC107694372,LOC108436064 non-coding upstream 130337 7206507 ~ 7209934 (+)
G10013 NA non-coding upstream 140734 7197090 ~ 7199537 (+)
G10012 NA non-coding upstream 143871 7189655 ~ 7196400 (+)
G9940 NA non-coding upstream 289277 7050725 ~ 7050994 (+)
G10094 NA non-coding downstream 73787 7420442 ~ 7421878 (+)
G10112 NA non-coding downstream 134975 7481630 ~ 7555541 (+)
G10127 LOC107551707,LOC107564386,LOC107743377,LOC107684933,LOC107710549 non-coding downstream 220655 7567310 ~ 7670458 (+)
G10145 LOC107564386,LOC107743377,LOC107684933,LOC107700544 non-coding downstream 264613 7611268 ~ 7612187 (+)
G10179 NA non-coding downstream 438823 7785478 ~ 7785832 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 40170 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 234479 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 353152 6986298 ~ 6987119 (+)
G9889 NA other upstream 647896 6691668 ~ 6692375 (+)
G9887 NA other upstream 649492 6690372 ~ 6690779 (+)
G10108 NA other downstream 157967 7504622 ~ 7582385 (+)
G10212 NA other downstream 760210 8106865 ~ 8107777 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 1815956 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 2399915 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 2564973 9911628 ~ 9916861 (+)

Expression


Co-expression Network