LOC122357060


Basic Information

Item Value
gene id LOC122357060
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22562512 ~ 22572000 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256244.1
GCTGTGTTCTCTGGAGATCTCGGTGGTGGTTTTCCGTGTTCTTCTGGGACTCTTTCAGATGGATCACATTACAATCTCTAAGTTGTGGAAGTTGTGTGTTTAATCGGAGGAAGCAAGATGCTGAAGGAAAATCGCTTACATTCTTTGGGAATAATGGCTGTGTGTCTGCTGCTTCttctgctgatgatgatgatgatgatgatgctgttCGGTTGCGTGAAGGCCTCGTCTCTGGAGAAGAGTCTGGTCTGGACGTCTTCAGACCCTCAGTGTGTTCAGCTGCTCAAACACCTGCAGAACGGCGTCACCGTCCAGATGCCCCCCAGCATCCAGGGCCACTGGGTCTCCAGCGGCTGCGAGGTGCGTCCGGGGCCCGAGTTCCTCACCCGCTCTTACCGTTTCTTCCACAACAACACGTTCGAGGCTCTTCAGTTCTACTACGCAGACAACCACTGCTCGCGGCCGAGCTACAGCCTGCAGGTTCGGGGCCGCCTGCGCCTGCGCCAGCCGTCCTGGATCGTCCGAGGCGGCACCGAGGCCGACTATCAGGTCCACGGCGTGCGTCTGGTGTGTCACTCGGCGTCTGCGGCCCGGGAGCTGGGCTGCGCTCCGTGGAGACCCGACGTCAGCTACGAGCTCTGGAGCGACTGCGGCCGCGCTCTCAACTTCTCCATGCACGAGCTGCAGCTGCTGCGGCTGGAGAAGCGCTACCTGCACCGCGGCCCCGGCCCCGGCCCCGAGCTGCTGGAGGAGCTGTACCTGGGAGACATCCACACGGAGGCGGATCAGAGGAAGCTCTACAGACCCTCCAGCTACCAGCCGGCGCTGCAGAGCGCTCAGGACCCTCACCCGAGCTGTGACGTCTGTCGGCTGGTGTCCGGCTCCGACCCGTTCCGTCCGGCCGTTCTCCCGCCGCGGGCCGAGCTGCCGGTGGCTCTGAGCGGTCAGTGGGCGTCGCGGCGCTGCGAGGTCCGGCCCGAGGAGCTGTTCCTCACCAGACACTTGATCTtccagcagagagagaggagctggGAGGGACGCTACCGTCACTTCTCTGACCCGGCCTGCAAGCACCCCACCTTCAGCCTGTTCGCCCGCGGCCACTTCAGCCCCGGCCCGCGCTCCGCTCGCGTCATGGGCGGCACCGACTTCCTCTTCAGAGTGGACCACATGCGGGTGACTCCGCTGGACCTGGCGACCGTGTCTCTGCTGAACGTGTTTGATGGGGACGGCTGCGGGGTCCAGGGCTCCTGGCAGGTGGGCGTGGAGCAGGACGTCACTCCGACCAATGGCTGCCTGGCGCTGGGGCTCCGCCTCCCTCACACCGAGTACGAGCTCTTCCGATTGGAGCGCGACTCCGCCGGACGCCTGCTGCTGTTCAACGGCCAGCGACCCAGCGACGGGTCCAGCCCCGACCGGCCCGAGCGCCGGCCCACCTCCTACCAGACGCCGCTCGTCCAGTGCTCCGCCGCcgggggtcagaggtcagaggtcagcgcCGCGCCGCGCCTCGCCAACCTGGCAACCGCGGCAGCGGCGCTCTGGAGTTTGGCGCTCGCGGGTTTCTGCGAGACGTGAAAACGAACCCAtgtttcccagaatgcacttgAGTTTTCCGTCAGACGGAGGACGAATGAACCTGCTGCACAACACACACTGCACTTTACACAAACCTACATCCTGAAACACACTCAGAGGAAAAATCACCACAAATAtagattctgtcatcatttactccatAAAATACACTTCCTACAGCCCAGGAGCGTCTTCTAGGAAGAGGTCCGTTCTCCTTTCCTGggaaattatgtataaattatgaattatttgtattgtgtactacaaaaaacatgctatttttattcctctttacacacacacacacacacacacacacacacatcatacatatatataatcacatccaaaataaagttcagtgtatatttatgtatatataagtaaacacacatacagattaCTTTGAAAACACGTGtactaatataatttacatataaacatatttaattcataaagttttaattcataaagtcataaatatacaccgtacacatatacaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256244.1 True 2083 mRNA 0.57 6 22562512 22572000

Neighbor

gene id symbol gene type direction distance location
epb41l3b epb41l3b,epb41l3,LOC107689342,LOC107729731,LOC107750217,LOC108427206 coding upstream 12645 22515405 ~ 22549867 (+)
LOC122324242 ephb1,LOC107549839,LOC107671589,LOC108430182,LOC106599529,LOC103359190 coding upstream 236340 22134354 ~ 22326172 (+)
gpc1b gpc1b,LOC107660106,LOC107749182,LOC107730456,LOC107549820,LOC107600088,LOC107671591 coding upstream 457411 22044868 ~ 22105101 (+)
gpc5c gpc5c,LOC107749179,LOC107660087,LOC107671592,LOC107730460 coding upstream 536425 21929297 ~ 22026087 (+)
trnam-cau_1 NA coding upstream 633693 21928747 ~ 21928819 (+)
LOC122323627 NA coding downstream 20599 22592599 ~ 22601454 (+)
foxl2b LOC107574316,LOC107730743,LOC107683772,LOC107750224,LOC107549802,LOC107684570 coding downstream 66886 22638886 ~ 22640594 (+)
pnp5b pnp5b,LOC107730396,LOC107574318,LOC107750205,LOC107549813,LOC107684565 coding downstream 87064 22659064 ~ 22665912 (+)
ncstn ncstn,LOC107552665,LOC107671788,LOC107696591,LOC107726318 coding downstream 100101 22672101 ~ 22688316 (+)
nectin4b LOC107726329,LOC107696495,LOC107671794 coding downstream 124081 22696081 ~ 22717815 (+)
G14540 NA non-coding upstream 48575 22512171 ~ 22513937 (+)
G14535 NA non-coding upstream 86310 22475781 ~ 22476202 (+)
G14532 NA non-coding upstream 89909 22467860 ~ 22472603 (+)
G14484 LOC107568745 non-coding upstream 647484 21913520 ~ 21915028 (+)
G14477 NA non-coding upstream 667034 21895171 ~ 21895478 (+)
G14542 NA non-coding downstream 5023 22577023 ~ 22578223 (+)
G14549 NA non-coding downstream 71795 22643795 ~ 22650843 (+)
G14578 NA non-coding downstream 170427 22742427 ~ 22786013 (+)
G14553 NA non-coding downstream 204240 22776240 ~ 22777003 (+)
LOC122357472 NA non-coding downstream 214721 22786721 ~ 22802473 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 76857 22461916 ~ 22485655 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 695113 21857212 ~ 21867399 (+)
G14471 NA other upstream 701070 21860891 ~ 21861442 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other upstream 709505 21843575 ~ 21853007 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other upstream 846222 21714683 ~ 21716290 (+)
LOC122327931 NA other downstream 61529 22633529 ~ 22674275 (+)
fcer1gl LOC107671799 other downstream 119199 22691199 ~ 22695330 (+)
LOC122324535 NA other downstream 431165 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 973106 23545106 ~ 23547974 (+)
LOC122323670 NA other downstream 1363921 23935921 ~ 23939016 (+)

Expression


Co-expression Network