e2f5 (e2f5,LOC107686091,LOC107713982,LOC107584115,LOC107558188,LOC107664024,LOC107751573)


Basic Information

Item Value
gene id e2f5
gene name e2f5,LOC107686091,LOC107713982,LOC107584115,LOC107558188,LOC107664024,LOC107751573
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14779301 ~ 14786610 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256737.1
GTGTAGCCTGAGGTAAATAAGTGCAAGAGATGACTGTTGCTCCCCCTCACCCTCACCAACAAAACCGAGGTCGACCTCCATACCTCTGAGCGAGACAAAGAGGGAGTTTTTGAAGTGCATTCATAAAAACACCGGGCGCTTGGATGGTATGGCTAAGTCGAACAGCGCGAGTTTTCCTCACACGACACCGAACGGGTCCAGTCGCCATGAGAAGAGTTTGGGTCTCCTGACAGTCAAGTTCGTTACTCTGCTTCAGGAGGCCAAAGATGGAGTGCTCGATCTCAAAGTGGCTGCAGACAGTTTGGCCGTCAAACAGAAGAGGAGAATCTACGACATCACCAATGTTCTTGAAGGCATTGGGCTCATCGAAAAGAAGACCAAAAACACCATTCAGTGGAAAGGGGAGAGTTCAGGCTGCCAGCCTCAGGAAGTTCTTGAGCAGGTAGAACTCCTCAAGGCAAATATTGCTGATCTGGAGATCCAAGAGAGAGAACTGGACATGCAGAAAGCGTGTCTGCAACAAAGCATCAAACACCTGAATGAAGAGCCCTCCAGCCGCCGATACAGCTACGTGACACATGAGGACATATGTGATGCATTCAATGGAGATACCCTTTTAGCTGTCATGGCACCATCAGGAACACAACTGGAGGTCCCAGTGCCTGAGATGGGCCACAATGGTCAGAAAAAGTACCAACTGAACTTGCGAAGTCACTCGGCTCCCATCCAGGTGATGCTGATAAACAGAGAGACAAGCTGCTCCAAGCCTGTCGTTGTCCCTGTCCCCCCTGTAGATGACATTTCTGCCATGCCGACTCCTCCTAGTACTCCAGCAGGGGTGCAGAGGTTCCCCATTTCTTCAGCAGAGCTTAGTGACCTAAAGTGTGGGCCACTTAAAAGCCCCGCTGCAGAGCACCAACTCACACCGTCCTCCACGTCCCCCGACATGCACATGGaatgcaaCTCTGAGTCTCCTGTCAGTCAGTGTTTGTTGATGCAGGGGTCTCTAGCTGCTCCTGAAGAACAGCAGAGGGAGATGGGGGGTCAGGATCTGCAGTCCATGCTGGAAGAAATGAGGGATGAGAGAGAAGGTGTTTCTAACCTCATTGATGAATTGATGTCTTCAGATGTTTTCCCCCTGTTAAGACTTTCACCCAACCCCGGTGTGGATTACAATTTCAACCTTGATGACAACGAGGGAGTCTGTGACCTTTTTGATGTGCAGATTCTTAATTATTAAAGCATGATTCATGCCCCCCCCCACTGCCAACGGCTGCATTCCTGCCTCAGCGTCTGCTCCCTGAACCTTGGCTTGCACTCGGTTTcacattcatttacatgaagTCCTTAACAGTGTTGTCCTGTCTGCCCTCAACAGTGACTGATGTTCTGTACAGGAAAGCTAAACCTCTTCCTCCTGTACTTTAGATACTTGTGTGTCTAATGTCTTTTCGTTTGATAGTTACTTGCTTTCAGTTTAGTTACTTAACTCGTTATTAAAGAGTGATGGTGTAATTCATAGAGGTGAATGGAGGGCAGTGGAATGTAATATGAGGAATTAAAACCACCCAAATATGACACACAAAGTACACAAAACATTGTACACTTGTTGGAACATGTGCCTTACGATCATTATTTTCCTCCTTTTTGTGCCATCCCGTCTTATTCTTCACGATACGTTACAAACAGTTCTaacttcatctttttttatcacATATTGTGAGCTTGAGCTCTAGAGTTTGATAATATCatttaaccacacacacacagacacagtttTCAATTGCGTGTTTAACTATTTAATCACAACACtaattatttgtatgttttgaagTTCATTGATAGAAACACTGTGACActcatatgtgtgtatttatattgagttattgtttgtctttgttaCTGACTGCCATGTTGGAATATCACGATGCTGTTCATTTTGTTGTGAAaagctcatttttgttttttgtgtagaGGCAATCCTACCTAATTTAAGAAGTGGACAGATATAATTTGAACTGTAGTGTTTTTGATTCGGAGGACAGATGTTAAACTGCCTTGGATAATCTTTGTTTATACGTTCCAGATTGTGCCTTacgcaggtttttttttccattactgTAAGTAACTTATTTAATCTCTATGTATAGGTTTTCTAATCAAAAGAGCAAAGGTTTTGTTCTGTTGCACTTTTTTAAccaaagttttatatatatatatatatatatataaaaaaactcttGCTGTTGCTCAAGTACTGtgataatttttgttttgtgtggaATTTCGTCTTGGAGAAGAAACCTATTTTCTGTAACACTGCAATATATCTCACATGAAGCATTCTTTTGGGTTGTGTCACAATCTCTCCCTTTCCTTAAGTGGCTCAAGGCTCTGTTTTCACTCTTTTACTGGTAATTTCACATAGGTTTAAATATACTAGGTATCGTGTAACCTTAACAAACCAGAAGGGGGTAGCAAGAACTAACTTTCCTGGAACTGGCTGAGCAAATGATAGTTTTGCAAATTGTTTAACTTATCAATGTGATCAATGCTTCACAATCTTGTACGTGTCCGCTCCTCTCTGATAGATAGTTCATGGTTTTTTAGCACAGGGTTAAATAGCGGTTTAGATTTAGCTCTTTAGATTTAATACCTTTTATATCAGTATGCACAGTCAAAGGTTTGGTCGAAACTAGGTAAACGTTACACATTTTAGAGTTTCTTTGATATTTCAGTTATCCAAGAAACCTGTATTATTCAGTTAACCAAAATGAAAACCCTGCTGTACTGTAGTTTAAAAAACGGTTAGTCAAATCAAACTTGctttcaaatgtatttgcattCCTCGCTGAAGCATCTTTTGAGAAGCAAAACATCTAGGCTTCTATCAGTATGGCGAAGGTCCGATGGGTTTGATTGGAAATCGTTTGGATACTTCAGATGGTGTTAATACAAATGCCATGTCACCCTTGTGACCCATAGCAATTGGCCAAGATTGCTGCTCTGGTTCTCCTCAAATTCTTCAGAACATATTTGAACATCCTGAACTGATATATTTATGTAGGACTGAAGAGTTAACTGCATGGAATCAATtaagaatggaaaaaaacaacaactgaaaatgTGCGCAATGTATAGGCTTTGATAAAATCAGTGAATATGATATTCTTCTGTATAGAGGAGCATTCTTTTATCATGATGCTCGCTTCATAAGAATTGGCCTCTTTTTTTATGGTGAATAATcgcattctttttaaataaaat

Function

symbol description
e2f5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of cell cycle and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including Kupffer's vesicle; central nervous system; forerunner cell group; neurogenic placode; and pleuroperitoneal region. Orthologous to human E2F5 (E2F transcription factor 5).

NR:

description
transcription factor E2F5-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04682 E2F4_5; transcription factor E2F4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256737.1 True 3267 mRNA 0.41 8 14779301 14786610

Neighbor

gene id symbol gene type direction distance location
myripa LOC107686056,LOC107584120,LOC107713972 coding downstream 7042 14753340 ~ 14772259 (-)
mrc1b mrc1,LOC107713970,LOC107686053,LOC107664090,LOC107751555,LOC107556679 coding downstream 57953 14709532 ~ 14721348 (-)
clul1 LOC107664027,LOC107584165,LOC107556660,LOC107713977,LOC107686051 coding downstream 138137 14635744 ~ 14641164 (-)
emilin2a LOC107746901,LOC107686046,LOC107584212,LOC107751548,LOC107664089,LOC107558120 coding downstream 285535 14480181 ~ 14493766 (-)
myl12.2 myl12.2,LOC107732590,LOC107746904,LOC103037289,LOC108436131 coding downstream 340301 14436561 ~ 14439000 (-)
lrrcc1 lrrcc1,LOC107713973,LOC107686059,LOC107584102,LOC107751561,LOC107556739,LOC107664063 coding upstream 370 14786980 ~ 14796187 (-)
ralyl LOC107586268,LOC107686092,LOC107713968 coding upstream 9780 14796390 ~ 14812356 (-)
and2 LOC107713965,LOC107751574,LOC107664022,LOC107585844,LOC107558199 coding upstream 28826 14815436 ~ 14818934 (-)
retreg1 fam134b,LOC107751562,LOC107664066,LOC107686060,LOC107713983,LOC107584095 coding upstream 36545 14823155 ~ 14834038 (-)
nol7 LOC107584088,LOC107713966 coding upstream 63998 14850608 ~ 14852234 (-)
G12161 NA non-coding downstream 3810 14773753 ~ 14775491 (-)
G12085 NA non-coding downstream 74843 14703637 ~ 14704458 (-)
G12084 cacnb2b,LOC107751551,LOC107664070,LOC107713974 non-coding downstream 75808 14701308 ~ 14703493 (-)
G12083 NA non-coding downstream 78923 14699753 ~ 14700378 (-)
G12082 NA non-coding downstream 80282 14691177 ~ 14699019 (-)
G12176 LOC107664036,LOC107558964 non-coding upstream 66300 14852910 ~ 14853552 (-)
G12175 epdr1,LOC107664036,LOC107558964 non-coding upstream 67084 14853694 ~ 14855169 (-)
G12199 NA non-coding upstream 148159 14934769 ~ 14935025 (-)
G12308 NA non-coding upstream 436601 15223211 ~ 15223455 (-)
G12313 ccr9a,LOC107579348,LOC107733890,LOC107657446,LOC107730785,LOC107557055,LOC107700981 non-coding upstream 451349 15237959 ~ 15240826 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other downstream 169035 14578995 ~ 14610266 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other downstream 1214936 13553773 ~ 13564365 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other downstream 1309038 13315229 ~ 13470263 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other downstream 1941208 12789524 ~ 12838093 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 3164363 11592441 ~ 11614938 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 333977 15120587 ~ 15127491 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other upstream 347361 15133971 ~ 15153989 (-)
ccdc24 ccdc24,LOC107657456,LOC107599905 other upstream 773053 15559663 ~ 15579706 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 1438113 16224723 ~ 16268835 (-)
LOC122362257 LOC107658348,LOC107563587,LOC107678922,LOC107726920,LOC107722065,LOC107559085 other upstream 1696550 16483160 ~ 16512019 (-)

Expression


Co-expression Network