opn4.1 (opn4.1,LOC107599887,LOC107733886,LOC107559015,LOC107730802,LOC107701002)


Basic Information

Item Value
gene id opn4.1
gene name opn4.1,LOC107599887,LOC107733886,LOC107559015,LOC107730802,LOC107701002
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15261961 ~ 15266205 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256812.1
ATGAACCACCATCACTCCTCATGGAGAGGTCATCATTGTGCCCCTGGAGACATCAACTGCACTGCAGGCTTTAAGGAGTCAGTGGGCAGCAGGAGCTACAAGCTGCTCCATGTGCCTTTCCACGGGCCGACCCATAACCATCACCATGAGACTCCACACCCGTTCCCCACCGTGGATGTTCCTGATCATGCCCACTACATCATCGGCTCCGTCATCTTAATAGTCGGCATCACCGGAGTGATTGGAAACGCACTGGTGGTTTACGTGTTCTGCCGGAGCCGCACTCTTCGCACCGCGGGGAACATGTTTGTGGTGAACCTGGCTGTTGCTGATTTCTTCATGTCCCTCACCCAGTCGCCCGTGTTCTTCGCAGCCAGCCTGCACAGGCGCTGGGTGTTCGGCGAGCGCTCTTGTGAGCTCTACGCCTTTTGCGGTGCTCTCTTCGGGATCTGTTCCATGATGACTCTGACCGCCATCGCAGCCGATCGCTGCCTCGCAATAACTCAGCCTCTTGCCCTTGTAGGCAGAGTCAGCCGACGCAAAGCAGGTGCAGTTTTGGCTGCCGTGTGGCTCTACTCCCTGGGCTGGAGCCTTCCACCATTCTTTGGCTGGAGTGCTTATGTTCCAGAGGGTCTTCAGACTTCATGTTCTTGGGACTATATGACCTTCACCCCATCAGTGCGTGCATACACCATCCTCCTATTCACTTTTGTGTTCTTCATCCCACTAGGCATTATTGCCAGCTGCTACTTTGGAATTTTCCGAGCTATCAGAGCTGCGGGGAAGGAAATACGAGAACTGAATTGTGGGGAAACGCACAAGGTGTATGAACGCATGCAGAACGAATGGAAGATGGCGAAAGTCGCCCTTCTGGtcattttgctttttgtaatATCATGGTCACCCTACTCTGTGGTGGCCCTCACCGCCACGGCTGGCTATTCCCACCTCCTGACTCCCTACATGAATTCAGTACCTGCTGTGATCGCCAAGGCCTCAGCCATCCATAATCCCATCATCTACGCAATTACGCATCCAAAGTATCGGGCAGCAATTGCCCGTTACATTCCGGCACTCCGCCCCATCTTGCGTGTCAAAGAGAAGGATCTCCGTTCCTCTTTTAGTTCAGGCAGTGTCAGTTCCCGTCGTCCGACCCTCACCAGCCAGTGCTCTCTCGGGGTTAGCATTGGCAATGCTGCGCGAGCTAATGGCCGCTGGGGGAAGACGCGCTTGTCTTCTGCTTCAGATAGTGATTCTTGTTGGACTGAGAGTGAGGCTGATGGTTCCAGCATCAATTCCCAGACCTTTGGTCGTCGTGTGTCCACGGAGATCTCTACGGATACTGCTATTCTCTCACCTGGGTCAAGTACTAACAGCTCCAGTGGCCAGAAGCTGGAAAAGACGCACAAAGTTGTAAGCTTACCAGTGCCGTCTATTACTTTTGAAACAGATACAGCCGATGGCGAGTCTGTGTCTGATGGGAAAGCTTTGCTCCTCGGGGGGAAAGAAAAGGAATGA

Function

symbol description
opn4.1 Enables photoreceptor activity. Acts upstream of or within light-induced release of internally sequestered calcium ion. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; heart; integument; testis; and visual system. Orthologous to human OPN4 (opsin 4).

NR:

description
mammal-like melanopsin 2

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0008377 light-induced release of internally sequestered calcium ion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256812.1 True 1518 mRNA 0.53 2 15261961 15266205

Neighbor

gene id symbol gene type direction distance location
si:dkey-154p10.3 si:dkey-154p10.3,LOC107733888,LOC107657449,LOC107701000,LOC107730804,LOC107557070,LOC107736657 coding upstream 1526 15256044 ~ 15260435 (+)
ccr9a ccr9a,LOC107579348,LOC107733890,LOC107657446,LOC107730785,LOC107557055,LOC107700981 coding upstream 21267 15238481 ~ 15240694 (+)
zgc:136930 zgc:136930,LOC107599883,LOC107733879,LOC107657418,LOC107559002 coding upstream 26710 15230006 ~ 15235251 (+)
klhl18 klhl18,LOC107657445,LOC107733883,LOC107701005,LOC107730797 coding upstream 39282 15214869 ~ 15222679 (+)
mycb mycb,LOC107584016,LOC107657430,LOC107713991 coding upstream 324003 14935722 ~ 14937958 (+)
tmem53 tmem53,LOC107730786,LOC107733878,LOC107700979,LOC107599888,LOC107657452 coding downstream 924 15267129 ~ 15269496 (+)
rnf220a rnf220a,LOC107700999,LOC107657453,LOC107739829,LOC107557077,LOC106599374,LOC107599891,LOC107730793 coding downstream 94549 15360754 ~ 15472750 (+)
klf17 klf17,LOC107739832,LOC107657420,LOC107599908,LOC107730790,LOC107700996,LOC107559026 coding downstream 250601 15516806 ~ 15518976 (+)
slc6a9 slc6a9,LOC107739827,LOC107657455,LOC107730788,LOC107700995,LOC107557089,LOC107599892 coding downstream 254843 15521048 ~ 15564330 (+)
zgc:113531 zgc:113531,LOC107739831,LOC107599893,LOC107657421,LOC107557127,LOC107730792,LOC107700978 coding downstream 313938 15580143 ~ 15585173 (+)
G12321 prpf4ba,LOC107701001 non-coding upstream 8917 15252494 ~ 15253044 (+)
G12255 NA non-coding upstream 81707 15118457 ~ 15180254 (+)
G12273 NA non-coding upstream 111086 15148605 ~ 15150875 (+)
G12211 NA non-coding upstream 224955 15034929 ~ 15037006 (+)
LOC122328201 NA non-coding upstream 235172 15025403 ~ 15026789 (+)
LOC122357737 NA non-coding downstream 232319 15498524 ~ 15500314 (+)
G12419 NA non-coding downstream 409998 15676203 ~ 15678446 (+)
G12432 NA non-coding downstream 456881 15723086 ~ 15804921 (+)
LOC122356092 NA non-coding downstream 465614 15731819 ~ 15742798 (+)
G12451 NA non-coding downstream 544688 15810893 ~ 15811393 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 12712 15241797 ~ 15249249 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 478984 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 508800 14746107 ~ 14753161 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 1082346 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 2387953 12867929 ~ 12874008 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 593974 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 1000838 16267043 ~ 16268797 (+)
LOC122323293 NA other downstream 1183927 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 1458409 16724614 ~ 16776351 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 1765934 17032139 ~ 17039903 (+)

Expression


Co-expression Network