LOC122357442 (LOC107599890,LOC107657450,LOC107733889,LOC107730803,LOC107701003)


Basic Information

Item Value
gene id LOC122357442
gene name LOC107599890,LOC107657450,LOC107733889,LOC107730803,LOC107701003
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15260575 ~ 15262914 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256838.1
GGTTTAATAACTTCTGTGTAATGAAGGTGAACGTTATTTGCTCTGTTTCAGTTGGTGGTTAATTATagctttaaaatagaaagcgaTTAAAGGATTGACCCATGATGCAGCAAGCGTAATACTGAGCTTAAAACGACAAGCAAATCCCACTACCAATCCAATAGAAACTGGATTATTTCAACTGTTGCTCAACGCACGAGCAGTGCATATTATCCAAGGACTGGAAgctttaatttctcattttgttgattttaaccTGTTGTAACCTTTTAAATCATGGCTCTCACTTTTTTATTCGATGACCGTTTTCACCTCGATCTGAACTTTATGCGAACAAACAGCTACACGCTGTAGCAACAACCAATGAAACCGCAGCCAGCGGCCTCCCGCTTCATGCAATTGGATGCCGCGGCAGAATAGGAACGCCCACTTGCAGCCGTAAAGAAGAATAACGGGAAGATCTTCCGTCGATTTAACGTAAACGCTGCTACTTGAGAAATTGCTCATTCTGGAAGACAGTTCACGGGGAATGTGCACAAATGGCGCTTTCGCAGCTCGTTGCTACTTCTCATTGCAGGCGAAGAGAAAAGAGTTTGAAGTTTTTTCAGCTTGTGTCAGAAGATTTGCGAACTTGTGTCAGATAATAAGCCCCATCTAGTTTCGATGGAATATTCGCCTTTTTATCCAATGTATTTTTCGTTTTGCAGCGAAATACACGTTTAATGTAGCTTAAATGATAATTACTTTAATTGCTGTTTAATGTGCTTTTGATACGACTCAGTTATGGCAGGTGTTAATATGGAGACCTTTTCTCCGCTGACCGTGAAGGACTGTTGGGTCGTTGGGCTCGAGCGCTTCGCTGTCGGTGCTGCTGGAGAAGAAGAGGAGTTTTTCGAGATTAGGATCGAATGGTCTGAAAAAAGCATAACATATCTGCGAAGGAGATATTACGACATAGTAAAACTTGTCAAGAATTTAAGCATATCATTTCCGGACGACATAGAACGTTTGTCTCAATCAATGATGCTTAAGGcactACAGAGGATAAAAGAAGCAGAGGAAAACAATAACGTTAAAACGAGGTTGGATGAAGTGGAAAAATTACTAAGAAATATAATCAAAATGCCACAAAAGTTCTCTCACTCTGAGGCAGTTCTTACATTTTTCAAGACTTCTCCTCTTGACTACACTTTGAAAACCATGTATGAACCAGTCCAGCCTCTCTACCAGAGTCCTGTCACTGTAGCTGATGTAAGAAGGGCAAATGGGTTTTGTTTGGCCAATACAGAAACAGTTCTTTTTGATCCGTATTCACTAGCACAAGGAGCCGAAACATCAACAAAGTGCAGCACTGAGATTGAGTCCCAGATGTGGACTGGAATGAGAATTGCAAATGGGATCAGATGCATCAAGGAAACTGCTTCAAGCAATCTTGTCAAAGGCTTCATGACTACTGGTACCCCTGAAAGCAAAGACACAGACTGTCAACCGAAAATATCACAGATTACCACCAGCAATGTGACCTACCTCGACCTACAAGCCTGTGAGACAGACATTCTTGAATGACATAGGTCCCTCGACAATGTAATTACAGCTTTCTagtgtgaaataatattttttttaaaaaaggtttagtctgtaagaataatatttttgaaataaaataatgcatttctataGGATTTCTAAAGATTAactttaatatgaattaaaaatagtaaaatgaaTGTTCTTTGGTTCATTTGCTAGCATTTATAAATTGTCAATATGTTTACGTGATGACTGATATCTCAAGGTCACTGAATGAAGTCAaccaattataaaaaaatgtcatataaagTTGTTTTACATTGTATAGCGAAAACTTATGTCGATACCCATTATATTTGGTTGCCAATGTTGTAGGGTAATACGTTAcaaataatcagatttttttcaagtgattaataaagtaatacatTACTTATA

Function

NR:

description
PREDICTED: PX domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256838.1 True 1968 mRNA 0.38 5 15260575 15262914

Neighbor

gene id symbol gene type direction distance location
si:dkey-154p10.3 si:dkey-154p10.3,LOC107733888,LOC107657449,LOC107701000,LOC107730804,LOC107557070,LOC107736657 coding upstream 140 15256044 ~ 15260435 (+)
ccr9a ccr9a,LOC107579348,LOC107733890,LOC107657446,LOC107730785,LOC107557055,LOC107700981 coding upstream 19881 15238481 ~ 15240694 (+)
zgc:136930 zgc:136930,LOC107599883,LOC107733879,LOC107657418,LOC107559002 coding upstream 25324 15230006 ~ 15235251 (+)
klhl18 klhl18,LOC107657445,LOC107733883,LOC107701005,LOC107730797 coding upstream 37896 15214869 ~ 15222679 (+)
mycb mycb,LOC107584016,LOC107657430,LOC107713991 coding upstream 322617 14935722 ~ 14937958 (+)
tmem53 tmem53,LOC107730786,LOC107733878,LOC107700979,LOC107599888,LOC107657452 coding downstream 4215 15267129 ~ 15269496 (+)
rnf220a rnf220a,LOC107700999,LOC107657453,LOC107739829,LOC107557077,LOC106599374,LOC107599891,LOC107730793 coding downstream 97840 15360754 ~ 15472750 (+)
klf17 klf17,LOC107739832,LOC107657420,LOC107599908,LOC107730790,LOC107700996,LOC107559026 coding downstream 253892 15516806 ~ 15518976 (+)
slc6a9 slc6a9,LOC107739827,LOC107657455,LOC107730788,LOC107700995,LOC107557089,LOC107599892 coding downstream 258134 15521048 ~ 15564330 (+)
zgc:113531 zgc:113531,LOC107739831,LOC107599893,LOC107657421,LOC107557127,LOC107730792,LOC107700978 coding downstream 317229 15580143 ~ 15585173 (+)
G12321 prpf4ba,LOC107701001 non-coding upstream 7531 15252494 ~ 15253044 (+)
G12255 NA non-coding upstream 80321 15118457 ~ 15180254 (+)
G12273 NA non-coding upstream 109700 15148605 ~ 15150875 (+)
G12211 NA non-coding upstream 223569 15034929 ~ 15037006 (+)
LOC122328201 NA non-coding upstream 233786 15025403 ~ 15026789 (+)
LOC122357737 NA non-coding downstream 235610 15498524 ~ 15500314 (+)
G12419 NA non-coding downstream 413289 15676203 ~ 15678446 (+)
G12432 NA non-coding downstream 460172 15723086 ~ 15804921 (+)
LOC122356092 NA non-coding downstream 468905 15731819 ~ 15742798 (+)
G12451 NA non-coding downstream 547979 15810893 ~ 15811393 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 11326 15241797 ~ 15249249 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 477598 14776322 ~ 14782977 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other upstream 507414 14746107 ~ 14753161 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 1080960 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 2386567 12867929 ~ 12874008 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 597265 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 1004129 16267043 ~ 16268797 (+)
LOC122323293 NA other downstream 1187218 16450132 ~ 16456532 (+)
LOC122361622 NA other downstream 1461700 16724614 ~ 16776351 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 1769225 17032139 ~ 17039903 (+)

Expression


Co-expression Network