ptger4c (ptger4c,LOC107716941,LOC107700513,LOC107743379,LOC107684935,LOC107564388,LOC107551710)


Basic Information

Item Value
gene id ptger4c
gene name ptger4c,LOC107716941,LOC107700513,LOC107743379,LOC107684935,LOC107564388,LOC107551710
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7388418 ~ 7391035 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256906.1
TATTCTTTTGCAAAATAATGCAGTTAGGCATGCACCGAATGGAACTTGCTATAAGCCACACACCTGCGTTTACTATTAGCTATTTCTGTCTGCATGGGATTGAAGGTGACGTCACTCTTGAAGCTGACATCACACAGTGGGTAGAGGAGCTGTGGCTTTCTATAAAAGCAGTGACACCTATGAGTCCACCCGAGGCCACAGAGCGATGCGCGTAAACCGCGCGTccgtttattatttatttggtaaactcAAGCACTTATGGACAAGAGAAGTATAGAGAAGTAGAGAAGTATACTTGTCAGACATGAATAATTCGCTGCTGAACGTGTCAGAAGCCAACAACTCCTCTCGTGCCTTGAGTCTAGACTACCGCTCTCTCATCACTTCGGCCAGTATGTTTGGCGTCGGGGTCCTCGGAAACCTCGTGGCGATCGTGGTGCTTTGCATCTCCAAAAAGGAGCAGAAGGAGACCACCTTCTACACTCTGGTGTGCGGGATGGCTATCACGGACCTGCTGGGCACCTGTTTCACCAGTCCGGTGGTCATCGCCACATACATCGCGGGCAGGTGGCCGGGCGGTGCGCTGCTGTGCcatttcttctccttctccatGCTGTTCTTCGGATCGGCCGGCATGTCTATTCTGTGCGCAATGTCGGTGGAGAGGTACCTGGCCATAAACCACGCGTACTTCTACTCGCAGCACGTGGACCGGGCTATGGCTCGGTTAGCGCTGATGGCGACGTACCTGGCCAATATCGTGCTGTGCATCTTGCCCAGTTTTGGTTTCGGAAAGCACACGAGACACTTTCCCGGAACTTGGTGCTTCTTGGACTGGCGCGCCATGGACTCCATCGGCGCCTCGTACACGTTTCTGTACGGAGGGTTCATGCTGCTGTTGATCGCCGTTACCGTCCTGTGTAATTTCGCCGTGTGCCGTTCACTGGTCGGGATGAGCAAGATGAGTCGCATGGTGAGGGCAGAGGTACCCGGACACACAGGCTCCAAGCGCAGGTTCAGATTAACATCTGCAGCGGAGATCCAGATGTTCTGGCTGTTGATTTTCATGACCATTGTGTTCCTGATATGCTCCATCCCTTTAGTGGTGCGCATCTTTGTCAACCAGCTGTACGATCCAGCTTATATATCATCAGGCAAAAGTCCAGATTATCGCAGTGATCTCTTGGCCATTAGATTTGCCTCCTTCAACCCTATCCTGGATCCATGGGTGTATATTCTGTGCAGGAAAAACCTACTAACCAAAAGCTGCACACAACTGAAACGCACCATCAGACTGAGGAAAGGGGATCGTAGTCGTGTTTTGGGTTGGATGGACGGTCAGCACTCGCCTCCGTCGTTTGCTCAAAGCAATTGCACAAGTTACGCGTCATTGCGCACGGCCATCTGTAGAAACGACGTGGGAAAACAGAGCTGTATGAACACTAAGTCTTACGTGGACTTAACCCTTCGCCAGGCATGGGACTTTGATACGGCTCTGGCTGAGTTTCATCCCTTCAGCGTCGACCAGAACGGCGTCATGGGGTTTGATGAAGATGAAGCGGCATCAAGTCCCAAACTCCTCGCTAAGACTGTTGTGGTGCTACCGGTCGCTCAGATAATAGAAAATAAGGCTGAAATAGTAACCTGCACTTTTAGTACACCAAGTTCATGCGTATCAGAAAAGTGCTTGAGACAATGACCCCGCTGCCAGTCCAGATTAACTGATTAATGCACtgtgacaaaaagaaaaagactttTTCTCTTGTCTTATTTCACATTCACAAATAATTCTGTGAATTCGCTTTATTTAGATCTAGAATGATCCAATTTTAGGATTAAACCATGAGAGGAGACACTTGTACGTCTATGTTTTGTCAGAtaacatgtttgtgtttaacGTGTGGACATGTTGCTTCCTTACCATGCTGCATGCTGGGTCGTACTTGACTGTGACTCGTAAAActgtgaataatttattaa

Function

symbol description
ptger4c Enables prostaglandin E receptor activity. Predicted to be involved in several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; cellular response to prostaglandin E stimulus; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; intestine; and ovarian follicle stage III. Human ortholog(s) of this gene implicated in ankylosing spondylitis; arteriosclerosis; and ulcerative colitis. Orthologous to human PTGER4 (prostaglandin E receptor 4).

NR:

description
prostaglandin E2 receptor EP4 subtype-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256906.1 True 1980 mRNA 0.49 2 7388418 7391035

Neighbor

gene id symbol gene type direction distance location
dmbx1a dmbx1a,LOC107588924,LOC107743378,LOC107700538,LOC107551711,LOC107684938,LOC108442545 coding upstream 41763 7340271 ~ 7346655 (+)
wls wls,LOC107684934 coding upstream 104608 7269715 ~ 7283810 (+)
scinlb LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC108280481,LOC106568976 coding upstream 120013 7257164 ~ 7268405 (+)
ccdc18 ccdc18,LOC107716953,LOC107658134,LOC107568077 coding upstream 133847 7236939 ~ 7254571 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding upstream 152305 7225090 ~ 7236113 (+)
glula LOC107563291,LOC107710552,LOC107700548,LOC107732203,LOC107553252 coding downstream 924096 8315131 ~ 8318467 (+)
elovl1a elovl1a,LOC107553254,LOC107732201,LOC107700551,LOC107710545,LOC108438881,LOC103047025 coding downstream 982203 8373238 ~ 8382443 (+)
cc2d1b LOC107563292,LOC107710553,LOC107700553,LOC107677533 coding downstream 995842 8386877 ~ 8403214 (+)
clcn2a clcn2,clcn2a,LOC107732945,LOC107710554,LOC107677884 coding downstream 1048844 8439879 ~ 8486904 (+)
atp1b3a atp1b3a,LOC107700561,LOC107563307,LOC107710617,LOC107732952,LOC107677716,LOC107553263 coding downstream 1199206 8590241 ~ 8599595 (+)
G10021 NA non-coding upstream 177480 7210738 ~ 7210938 (+)
G10020 fam69a,fam69aa,LOC107716951,LOC107568082,LOC107694372,LOC108436064 non-coding upstream 178484 7206507 ~ 7209934 (+)
G10013 NA non-coding upstream 188881 7197090 ~ 7199537 (+)
G10012 NA non-coding upstream 192018 7189655 ~ 7196400 (+)
G9940 NA non-coding upstream 337424 7050725 ~ 7050994 (+)
G10094 NA non-coding downstream 29407 7420442 ~ 7421878 (+)
G10112 NA non-coding downstream 90595 7481630 ~ 7555541 (+)
G10127 LOC107551707,LOC107564386,LOC107743377,LOC107684933,LOC107710549 non-coding downstream 176275 7567310 ~ 7670458 (+)
G10145 LOC107564386,LOC107743377,LOC107684933,LOC107700544 non-coding downstream 220233 7611268 ~ 7612187 (+)
G10179 NA non-coding downstream 394443 7785478 ~ 7785832 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 88317 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 282626 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 401299 6986298 ~ 6987119 (+)
G9889 NA other upstream 696043 6691668 ~ 6692375 (+)
G9887 NA other upstream 697639 6690372 ~ 6690779 (+)
G10108 NA other downstream 113587 7504622 ~ 7582385 (+)
G10212 NA other downstream 715830 8106865 ~ 8107777 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 1771576 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 2355535 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 2520593 9911628 ~ 9916861 (+)

Expression


Co-expression Network