march6 (march6,LOC107746911,LOC107686038,LOC107732575,LOC107664076)


Basic Information

Item Value
gene id march6
gene name march6,LOC107746911,LOC107686038,LOC107732575,LOC107664076
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14245255 ~ 14262414 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043257245.1
AATCGAAACCGTGGCCCCACACGGATCCAGAGGCCACAAACATGTTCAGCCGAGCTGGAATATAGTCGACCAACAAGTAGCTAGATCAGCGCTCTCTGTGAGCATTACACGGAAAAGCGGGTCGGGTTTGGGGTTATGCGGCGTTCATGTTTGGATCGATTTCGTCATGTTGTATTTTAACGTAGTTGTGAGCTAATACTGTGGTTTGTTCGGCGGAGTGTGTTATGTGTTGACTGTAAAGAGGACAGTGCGTCACCGTACAAGATGGACACTGCCGAAGAAGCCGATATATGTCGGGTGTGTCGATCTGAGGGAACTCAGGACAAACCCCTCTATCATCCTTGCGTGTGTACTGGAAGTATTAAGTTCATCCACCAAGAATGCTTGGTGCAGTGGCTTAAACACAGCAGAAAAGAGTACTGCGAATTATGCAAGCACAGATTTGCTTTCACGCCAATTTACTCTCCAGACATGCCTTCAAGGCTCCCAGTGCAGGACATTTTCGCAGGACTGGTCACCAGTATAGGCACAGCTATCAGATACTGGTTTCATTACACGCTTGTTGCCTTCGCTTGGCTGGGGGTTGTACCTCTAACAGCATGTCGGATCTATAAGTGTCTGTTTACTGGATCTGTAAGCTCTCTGCTGACTCTGCCGTTAGACATGCTCTCCACGGAGAACTTGCTGGCCGACTGCCTGCAGGGCTGCTTTGTGGTGACCTGTACCCTCTGCGCCTTCATCAGTCTGGTGTGGCTGCGGGAGCAGATTGTTCATGGTGGAGCCCCGTTATGGCTGGAGCAGAACCAGCAGCAACCTGCTAATGCAGCAGGACCACCTAATGAGGCTGCTGGCCAAGGTAATGGGGGTGCTGAAAACCAGCCCATGCCTGCTCAAGCAGAACCTCCAGCTGAAAATGCTGCAGCGGCTGAAGCTCCTGACCTCCCTGCTGACCCTGCTGAAGAGATGGAGCTAGATAATGAAGATGAGGAGGATGGAGGAGCCGAAGATGTGGCAGACGCCAACAATGGAGCACAGGaTGATATGAACTGGAATGCTCTGGAATGGGATCGTGCGGCTGAAGAGCTCACTTGGGAGAGGATGCTTGGGCTTGATGGGTCCCTGGTTTTTCTGGAACATGTGTTCTGGGTGGTCTCTCTCAACACGCTCTTCATCCTGGTGTTTGCTTTCTGTCCCTACCATATTGGCCACTTCTCAGTGGTTGGTCTTGGTTTTGAAGAATATGTTCGTGCCTCACACTTTGAGGGACTCATCACCACTATAGTTGGATATGTCCTTTTAGCCATCACACTCATTGTGTGTCATGGATTAGCAGCACTGGTGAGATTTCAAAGATCACGCCGCTTGTTAGGAGTCTGCTACATTGTTGTAAAGGTTTCTCTTCTAGTAGTTGTAGAGATTGGCGTGTTTCCCCTCATCTGCGGCTGGTGGCTTGATATCTGCTCTctgGAAATGTTTGATGCCTCTTTGAAAGACAGAGAGTTGAGTTTTGAATCAGCCCCAGGGACCACCATGTTCCTTCACTGGCTGGTGGGGATGGTCTATGTCTTCTATTTTGCCTCTTTCATTCTTCTACTTAGAGAGGTTCTGAGGCCTGGAGTCTTGTGGTTTCTCAGAAATCTGAACGATCCAGATTTCAACCCAGTGCAGGAAATGATTCACCTACCAATATATAGACACTTGAGGCGATTCATATTATCAGTGgTTGTATTTGGCTCAATCGTTCTTCTCATGTTGTGGCTTCCTATCCGGATAATCAAACACATCTTCCCTTCATTTCTTCCCTACAATGTGATGCTTTACAgtgaTGCTCCGGTGAGTGAGCTGTCTCTGGAGCTGCTATTGTTGCAGGTTGTTCTTCCTGCTCTTTTGGAACAGGGACATACACGGCAGTGGCTCAAAGGTCTGGTGCGAGCGTGGACTGTGACTGCTGGTTACTTGCTAGACTTGCATTCTTACTTGCTGGGAGACCAGGAAGACAATGAGAACAACGCTAACCAGCAagccaacaacaacaaccagcAGGCCCGAAACAATGCCATTCCTGTGGTGGGTGAAGGACTGCACGCTGCCCACCAGGCCATACTTCAGCAGGGGGGCCCAGTGGGCTTTCAGCCCTATCACCGGCCCATGAAATTCCCTCTAAGGATTGTGTTGCTGAtactgtttatgtgtgtgaCGCTGCTTTTGGCCAGTTTGGTGTGTCTCACATTGCCAGTGTTCACTGGACGCTGGCTGATGTCCTTCTGGACGGGCAGTGCTAAGATCCATGAGCTGTACACTGCAGCGTGTGGGCTGTATGTTTGCTGGCTCTCCATCAGAGCGATCACAGTGCTGCTGGCCTGGATGCCTCAGGGCCGGAGAGTCATCCTGCTCAAGGTTCAGGAGTGGACCCTCATGATTATGAAGACGCTGATTGTGGCTGTGCTGTTGGCTGGAGTGATCCCTCTGCTCTTGGGACTTCTGTTCGAGCTGGTGATTGTAGCTCCTCTCAGAGTGCCGCTGGATCAGACGCCTCTGTTCTACCCCTGGCAGGACTGGGCTTTAGGAGTGCTGCATGCCAAAATCATTGCTGCCATCACCCTCATGGGTCCCCAGTGGTGGTTGAAGACAGTTATTGAGCAGGTGTACGCCAATGGAATCAGGAACATTGACCTTCATTTCATCATCAGGAAGCTGGCGGCCCCGGTCATCGCTGTACTGCTGCTTTCTCTCTGCATCCCTTATGTGATTGCTGTAGGCATCGTCCCCCTTCTTGGGGTCACTATGGAGATGCAGAATCTGGTGCAGAGGAGAATCTACCCCTTCCTTCTGATGGTAGTGGTGCTGATGGGCATCCTCTTTTTCCAAATCCGACAATTCAAGCGCCTTTATGAGCACATCAAGAACGACAAGTACCTTGTTGGACAGAGACTTGTGAATTATGAGCGAAAAGCTGGCAAGCCCAGCACTACCACACACAGCAGTTCAGTGCAGGAGTAAAGAGCTTGGGGTCGCGTTGGAGTCACTGTTTTTGTGTGCAAGCATGTGTGAGCATGCGTGAATGACTGAACAACCTTCCTCTCCTGCTCCCTCTGTGTGCGTCCATACATCCAGCACGTCCACCAAGACTCAAAAAAACTGACCTCTGGCCTCTCTGACCCTGCCAGCAAAAAAAGGGGGAAAGAGTCATGTACATAAACGGGGCGAAAGAGTGAATCCCTTCAGCCAGCCAACCGTGGATTAAAAAGAATGTCTCActcctaaaaagaaaaaaaaaaaaactgaaaaaaagattaagtatgtgcattaatttattaaatctaGTTGTTACCTTATTTGTGGAGATTTGTTCGTGGCAAGACTCGACCCACATGGTTTCTTTCATCACCCTCGTGGAGAGGCCAGTCACGCTCAAGAGATGAAAAGTCTTTTGAAACGTCTGGGTCGTAATGGAGCTGGACTGTCACATTAGTACCGTTTTATTTATTAGGTTTGAATTTTCAATGAAATATGATCTTGAAGTTTTTGAATGAGAGGGTCTTGTTTGATTTGATGCTTTCGGTAGTGTGTCTTACCTTCATTTTCTCGATGCTTTAACCTCCCTAATTTTATGTGCAGACCAGAAGCGGATGGAGGCGGGTTTAAAAGTTACGCCGCACGCATCTGCTTCCTGTCATGTGGAAAAGAGGGAATTTCGTTTCACCAACATTTCGCTTGCGACTGTTGTTGACCAGTTCGTAGAAGCACAGAGTCAGTATCTCGTGGTTTGATGGTAGAGTTTATGGCTCACAGTGAGCCGCGAATCCCATCTCTGCCTGCTAGCTCTGCGTTCAACTCTGAAAAATCCTTTCGAGTAGCTTAGAAGAGCGTTTAGAGTGCTAATTGCGTCAGTGGTTGAGCTAGCATATTTGTTTGCTGTTCAAGTTGATATCGACCGTTGTATGTCCGTCTCGTGCTCAGCATGGCCTAGCAAAACTTTTCTCATAGATGTAACTCTGGCACGTACACAGGTTGTTGCActtcttttaatttaagaaaGCGTCTTTTAAGAGCAGCAATAGTTCGGAAACCCTTTAGACCAAATTTTAAGTCTTTACGCGTTTGGGAGCTCACTAAAATCAATCAGATCAAATTTTCAGCCGAAATGTGGTTTGTAATTTTTGCATCGGTTCGGTAGAACAGTTTCGTGTCTATAGGTAAGGAGgtatttgtaaataatgtaactTTTCGATTGTTCGTAGCAGAGTACGTTTTTCTCCATTTCAAATTTGCTGTGTCTGTTACAGATTCACGATTCCCGAAGAATTTGTCTCAGACGGCTTTAGAGATAGTGTTAATCAGCGCTGAGATTCTATAAGTGACCTTATAGTATCTTATTACACTGATACTGGATACTGTATGCTTCTTGATAGCTTGCGCTCCTCTGAAAGGCaaatgttctatttttatatgTGCAACTAGTGACACCGTTTTCATGTTTGATCAGCCATTGATTTGATTTCCTCTGAAGTTTTCTGAGGTCAGCTAGAATCCAGGTGAAGGTAGTGGTCCAGCACTAAACACCTTTGTGTGTCTGGTTTACTAAGCCTTTTCCTTTTCATCGCATGTTTGTGTGAGAAGTATTCAGTATTCTGAATGTTTTCAAACCTCCTCCTAGGAGGCTCTCGCTGTAACAATTACATCCTCATAATGGCagacaagttttttttgttgaaaacttttattacaaatattaaatcacAAAGTGTAGTA

Function

symbol description
march6 Predicted to enable zinc ion binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 3. Orthologous to human MARCHF6 (membrane associated ring-CH-type finger 6).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH6

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043257245.1 True 4752 mRNA 0.47 26 14245255 14262414

Neighbor

gene id symbol gene type direction distance location
atpsckmt fam173b,LOC107664046,LOC107746922,LOC107550697,LOC107686036,LOC107732578 coding upstream 311 14242673 ~ 14244944 (+)
LOC122355826 LOC107746923,LOC107732576,LOC107550699,LOC107686037,LOC107664020 coding upstream 3383 14233819 ~ 14241872 (+)
socs6b LOC107746913,LOC107584321,LOC107686035,LOC107664088,LOC107732589,LOC107550707 coding upstream 26704 14214494 ~ 14218551 (+)
crispld1b crispld1b,LOC107732556,LOC107746925,LOC107664039,LOC107686081,LOC107550700 coding upstream 42037 14195559 ~ 14203218 (+)
pi15b pi15b,pi15,LOC107746926,LOC107686080,LOC107732565,LOC107550701,LOC107664030,LOC108435710,LOC107586375 coding upstream 50545 14190469 ~ 14194710 (+)
ankrd33bb ankrd33bb,LOC107550706,LOC107732577,LOC107686083,LOC107664029 coding downstream 150 14262564 ~ 14273620 (+)
si:dkey-94e7.2 si:dkey-94e7.2,LOC107686084,LOC107586344,LOC107732574,LOC107746919,LOC108440665,LOC108268141 coding downstream 86167 14348581 ~ 14351572 (+)
tcea1 tcea1,LOC107746907,LOC107664035,LOC107558928,LOC107732572,LOC107686041,LOC107584254 coding downstream 101507 14363921 ~ 14368090 (+)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding downstream 117657 14380071 ~ 14410644 (+)
oprk1 oprk1,LOC107586336,LOC107746918,LOC107664042,LOC107732559,LOC107558938 coding downstream 159822 14422236 ~ 14426212 (+)
G11832 rpl7,LOC107664057,LOC107584398,LOC107686030,LOC107550715 non-coding upstream 59469 14136114 ~ 14185786 (+)
G11856 jph1b,LOC107686034,LOC107746914,LOC107550709,LOC107584332,LOC107732545,LOC107664083 non-coding upstream 78300 14108155 ~ 14166955 (+)
G11855 NA non-coding upstream 80878 14131759 ~ 14164377 (+)
LOC122357607 NA non-coding upstream 146408 14091564 ~ 14098847 (+)
G11836 NA non-coding upstream 193635 14048717 ~ 14051620 (+)
G11894 NA non-coding downstream 107274 14369688 ~ 14371834 (+)
G11895 rgs20,LOC107584260,LOC107746905 non-coding downstream 109504 14371918 ~ 14375750 (+)
G11898 LOC106524523,LOC107383785 non-coding downstream 126571 14388985 ~ 14437409 (+)
LOC122355240 NA non-coding downstream 233036 14495450 ~ 14497873 (+)
G11914 NA non-coding downstream 297446 14559860 ~ 14603545 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 65640 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1371247 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 1618868 12623823 ~ 12626387 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 2307665 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 2737551 11482104 ~ 11507704 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 483693 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 513908 14776322 ~ 14782977 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 979383 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1597765 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 2004629 16267043 ~ 16268797 (+)

Expression


Co-expression Network