XLOC_006637 (si:dkey-192p21.6)


Basic Information

Item Value
gene id XLOC_006637
gene name si:dkey-192p21.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25642050 ~ 25720907 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012815
AGGTAAAAAGTAAAACAGAAGATTTGGAATTAACAATGAAGGCAGTCAATATCTTCGATGTTCTCTTGTTAGCAGGAAGTTTACTCCCAGCAGGGCTGTGTGAGACACATCATGAAGTTTACAAGCTGAAAATGGACGAGGCGCTGATAAAATTCCATAATGAACTTCCGTACAACATTAGTGTTTACTACACCTCGGATTACTGTTATAAGTGTCTTTATCAGCCTCTTGCCACTCTTGGAATTGGGCAGAGTAATATTTCTGTGATTGTAAGCACACAATTCAAATTGACTCTACAAATCACATCAATAGTTGGAACCGCCAATCTTTGCAGTCTGAGTCAGACATTTGAGGAAGCTGGCCATTATTCTCTGTGGATGAGGAAGCAGGGCTTGCTAAAGGATGTAACCTGCTCTCTCACTGTGGACAGGAGTCCAAATAACGCATACCTGCCACTGTTGGCGGCGTTCTTGATTCTGACTTTCATTGCTGCATTTTGGGTCTCTTTACCTTATATACTCAGATTACGCTGTTCTCAGAGGCTAAAGAATCGAATGTGTCACCACGGGTCTCAGAACTCCATGGAAATGgaGGAGCCTAATACCGAACAACAAATTGACGAAAGCAAACCGAAATCATCAAGACTGAAGTCACTGGACACATTCAGAGGATTTTCCCTGACTGTGATGGTGTTTGTGAATTATGGAGGAGGTGGTTACTGGTTTTTCCAACATGCACCATGGAATGGTCTCACAGTTGCTGATCTTGTGATGCCTTGGTTTGTGTTTATTATAGGTACTTCTGTAATGCTAGCATTCACGTCGATGCATAGAAAAGGTGTTTCATTGCTACAGCTGCTTCGCAAGGTGACCTGGAGGACCGTCGTCCTGATGCTCATCGGCTTCTGCTTTATGAACTACAGCCCAAGAGATGGTATCCTGGTCCTGGCTGCGGATACCCGGAGTTCTCCAGCGTCTGGGCTTCACCTATTTCGTTCTGGCACTGATCATAACTGGTGGAACCCCATTCAGGATGTCATTTTATACTGGCCTGAGTGGCTCTTCATTGTGTTGCTGGAGACCTTGTGGCTGTGCCTCACTTTCCTACTGCCAGTCCCAAACTGCCCTACTGGATATTTAGGAGCAGGAGGTGTTGGAGATGCAGGTTTATACCCAAACTGCACAGGAGGAGCAGCTGCACATATAGACAAGTGGTTTTTTGGGGACAACATGTTCTGGTATCCGACATGCAAGGTCTTGTATCGAACAACAGAGCCTTTTGACCCAGAGGGTGTTCTGGGTACAATAAACTCCATAGTCATGGGATTCTTAGGCATGCAGGCCGGAAAGATTCTTCTGTTTTTTCGTCAGATGAATAAAGGTATCCTGGCGCGATTCCTGGTTTGGGCTTTAATCCTGGGAATCTCCGCAGCCATCCTTTCTAAGTGCACAAGAGACGAAGGATTTATACCTGTCAATAAAAACCTTTGGTCTCTGTCGTTTGTGACTTGCATGGCCTGCATGTCGTTTTTGCTGCTTGCTGTGATGTATTTCATCATAGATGTTAAGAAATGGTGGGGCGGACAACCTTTCATTTTTCCTGGAATGAACTCTATATTTGTGTATGTTGGTCACTCTCTGCTGGGCTCGTACTTCCCCTTCAGTTGGGAGATGCGTTTTCAGGACAGTCACTGGGAGCCGCTTTTCCAGAACCTGTGGGCAACTGGACTTTGGGTCTTCATCTCGTATCTACTCTACCGCAAAAAATTTTTCCTCAAAATCTGATGCTGCAAGTGTTTTTGTCTCATGAAAGCATTTATATacgttaagtgttagttattc
>TCONS_00012816
GTTTGAACTGAAGAGGCCTGTGATGCAGTTGGGTGACTTCACACAGTGAGATAATAATTAAACCGTGAACAAACTTTAGCAGTAGAACTTATCGAGCATTCATGCAGGTCGTCAGCAGGAAGTTTACTCCCAGCAGGGCTGTGTGAGACACATCATGAAGTTTACAAGCTGAAAATGGACGAGGCGCTGATAAAATTCCATAATGAACTTCCGTACAACATTAGTGTTTACTACACCTCGGATTACTGTTATAAGTGTCTTTATCAGCCTCTTGCCACTCTTGGAATTGGGCAGAGTAATATTTCTGTGATTGTAAGCACACAATTCAAATTGACTCTACAAATCACATCAATAGTTGGAACCGCCAATCTTTGCAGTCTGAGTCAGACATTTGAGGAAGCTGGCCATTATTCTCTGTGGATGAGGAAGCAGGGCTTGCTAAAGGATGTAACCTGCTCTCTCACTGTGGACAGGAGTCCAAATAACGCATACCTGCCACTGTTGGCGGCGTTCTTGATTCTGACTTTCATTGCTGCATTTTGGGTCTCTTTACCTTATATACTCAGATTACGCTGTTCTCAGAGGCTAAAGAATCGAATGTGTCACCACGGGTCTCAGAACTCCATGGAAATGgaGGAGCCTAATACCGAACAACAAATTGACGAAAGCAAACCGAAATCATCAAGACTGAAGTCACTGGACACATTCAGAGGATTTTCCCTGACTGTGATGGTGTTTGTGAATTATGGAGGAGGTGGTTACTGGTTTTTCCAACATGCACCATGGAATG
>TCONS_00012817
GCCCTGCCAGAAGCCTGAGCGAAATAGAAGTGTTTGAACTGAAGAGGCCTGTGATGCAGTTGGGTGACTTCACACAGTGAGATAATAATTAAACCGTGAACAAACTTTAGCAGTAGAACTTATCGAGCATTCATGCAGGTCGTCAGGAAGTTTACTCCCAGCAGGGCTGTGTGAGACACATCATGAAGTTTACAAGCTGAAAATGGACGAGGCGCTGATAAAATTCCATAATGAACTTCCGTACAACATTAGTGTTTACTACACCTCGGATTACTGTTATAAGTGTCTTTATCAGCCTCTTGCCACTCTTGGAATTGGGCAGAGTAATATTTCTGTGATTGTAAGCACACAATTCAAATTGACTCTACAAATCACATCAATAGTTGGAACCGCCAATCTTTGCAGTCTGAGTCAGACATTTGAGGAAGCTGGCCATTATTCTCTGTGGATGAGGAAGCAGGGCTTGCTAAAGGATGTAACCTGCTCTCTCACTGTGGACAGGAGTCCAAATAACGCATACCTGCCACTGTTGGCGGCGTTCTTGATTCTGACTTTCATTGCTGCATTTTGGGTCTCTTTACCTTATATACTCAGATTACGCTGTTCTCAGAGGCTAAAGAATCGAATGTGTCACCACGGGTCTCAGAACTCCATGGAAATGgaGGAGCCTAATACCGAACAACAAATTGACGAAAGCAAACCGAAATCATCAAGACTGAAGTCACTGGACACATTCAGAGGATTTTCCCTGACTGTGATGGTGTTTGTGAATTATGGAGGAGGTGGTTACTGGTTTTTCCAACATGCACCATGGAATG

Function

symbol description
si:dkey-192p21.6 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in mucopolysaccharidosis type IIIC and retinitis pigmentosa 73. Orthologous to human HGSNAT (heparan-alpha-glucosaminide N-acetyltransferase).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-809 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in mucopolysaccharidosis type IIIC and retinitis pigmentosa 73. Orthologous to human HGSNAT (heparan-alpha-glucosaminide N-acetyltransferase).

Ensembl:

ensembl_id ENSDARG00000091212

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012815 False 1841 mRNA 0.45 18 25642050 25719628
TCONS_00012816 False 790 mRNA 0.43 9 25682675 25720876
TCONS_00012817 True 818 mRNA 0.44 9 25682675 25720907

Neighbor

gene id symbol gene type direction distance location
XLOC_006636 ret coding downstream 9294 25584556 ~ 25632756 (-)
XLOC_006635 csgalnact2 coding downstream 60747 25569831 ~ 25581303 (-)
XLOC_006634 mcmbp coding downstream 93168 25531004 ~ 25548882 (-)
XLOC_006633 BX005252.1 coding downstream 111402 25530534 ~ 25530648 (-)
XLOC_006632 tial1 coding downstream 157298 25472005 ~ 25484752 (-)
XLOC_006638 sgpl1 coding upstream 4640 25725547 ~ 25750910 (-)
XLOC_006639 pdlim1 coding upstream 42001 25762908 ~ 25774183 (-)
XLOC_006640 NA coding upstream 55482 25776389 ~ 25778815 (-)
XLOC_006641 rel coding upstream 74604 25795511 ~ 25819825 (-)
XLOC_006642 papolg coding upstream 103438 25824345 ~ 25842074 (-)
XLOC_006471 BX537274.2 misc downstream 15377145 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 24815825 825904 ~ 826225 (-)
XLOC_006629 NA non-coding downstream 357334 25210158 ~ 25284716 (-)
XLOC_006619 NA non-coding downstream 1018825 24590420 ~ 24623225 (-)
XLOC_006620 AL831745.2 non-coding downstream 1035423 24602410 ~ 24606627 (-)
XLOC_006618 AL831745.1 non-coding downstream 1053830 24585224 ~ 24588220 (-)
XLOC_006643 NA non-coding upstream 125625 25846532 ~ 25853311 (-)
XLOC_006644 NA non-coding upstream 288590 26009497 ~ 26703804 (-)
XLOC_006645 NA non-coding upstream 812447 26533354 ~ 26544816 (-)
XLOC_006646 AL627132.1 non-coding upstream 846159 26567066 ~ 26567184 (-)

Expression


Co-expression Network